Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333785.1

Orthogroup ID

OG0010834

Physical Location & Seq

Genomic Coordinates Reverse (-)

211 .. 720

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333785.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgaagttgatcttcatatgcatgtattgctgttctgtttatacttctggttatgatctcagatacagggccgtgacaagtgcatactataggggttcagtgggggcaatgctggtctatgacattacgaagcctcagtcatttgatcatgtaacgaggtggttagaggaactgaggggacatgctgacagcaatattgtcgtcatgcttgttggtaacaaatctgacctggggacgctgcgagctgtaccatctgaggatgcaaaagattttgcccagagggagaacctcttctttatggaggcatcagctcttgaagctactaatgttgaatctgcatttgtcacagtcctaacagaaatttatcgagtagttggcaagaagtccctcattgccaatgatgaaacagagtctggagggaattcctcacttctcaagggaactacacttattgtccctacacaagatcctctgcctgaagcaaaatctggctgttgcttctcttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

169

Amino Acids

18.61

Weight (kDa)

5.2

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47960
fragaria_vesca	FvH4_7g00660
malus_domestica	MD02G1315800.v1.1 MD07G1006300.v1.1
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom02g26460 pycom07g00500
rosa_chinensis	RchiOBHm_Chr1g0314881
rosa_laevigata	RLG00000030758
rosa_multiflora	Rmu_co8333785.1_g000001 Rmu_sc0002833.1_g000047 Rmu_sc0010489.1_g000007
rosa_roxburghii	Rroxscaffold_4G00331760
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013400 Rh1BG005100 Rh1DG006900
rosa_wichuraiana	Rw1G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	2 cut(s)	360, 421
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	317, 332
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	245, 311, 320
AluI	AGCT	3 cut(s)	245, 311, 320
AlwI	GGATC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	360, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
Asp700I	GAANNNNTTC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	56
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	250, 314
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	229
Bse3DI	GCAATG	2 cut(s)	114, 390
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	2 cut(s)	114, 390
BseMII	CTCAG	4 cut(s)	73, 149, 164, 246
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	71
BslFI	GGGAC	4 cut(s)	192, 247, 370, 440
BsmFI	GGGAC	4 cut(s)	192, 247, 370, 440
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	9, 55, 145, 466
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	4 cut(s)	72, 148, 165, 247
BspPI	GGATC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	114, 390
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	9, 55, 145, 466
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	4 cut(s)	59, 135, 173, 255
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	4 cut(s)	12, 58, 148, 469
BstMBI	GATC	4 cut(s)	9, 55, 145, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 317
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	2 cut(s)	25, 185
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	4 cut(s)	22, 149, 182, 205
CviJI	RGCY	6 cut(s)	71, 133, 245, 311, 320, 492
CviKI_1	RGCY	6 cut(s)	71, 133, 245, 311, 320, 492
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	4 cut(s)	59, 135, 173, 255
DpnI	GATC	4 cut(s)	11, 57, 147, 468
DpnII	GATC	4 cut(s)	9, 55, 145, 466
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	23
FaeI	CATG	4 cut(s)	25, 152, 185, 208
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	4 cut(s)	192, 247, 370, 440
FatI	CATG	4 cut(s)	21, 148, 181, 204
FauNDI	CATATG	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	71
HgaI	GACGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	25, 152, 185, 208
HinfI	GANTC	2 cut(s)	332, 410
Hpy188I	TCNGA	3 cut(s)	62, 226, 256
Hpy188III	TCNNGA	2 cut(s)	314, 414
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	4 cut(s)	21, 83, 263, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 317
HpyF3I	CTNAG	4 cut(s)	59, 135, 173, 255
Hsp92II	CATG	4 cut(s)	25, 152, 185, 208
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	9, 55, 145, 466
LpnPI	CCDG	9 cut(s)	33, 52, 98, 215, 242, 290, 399, 474, 489
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	2 cut(s)	250, 314
MaeIII	GTNAC	4 cut(s)	73, 151, 215, 343
MalI	GATC	4 cut(s)	11, 57, 147, 468
MboI	GATC	4 cut(s)	9, 55, 145, 466
MboII	GAAGA	3 cut(s)	4, 283, 495
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	2 cut(s)	360, 421
MlyI	GAGTC	1 cut(s)	419
Mph1103I	ATGCAT	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	27, 317
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	4 cut(s)	9, 55, 145, 466
NlaIII	CATG	4 cut(s)	25, 152, 185, 208
NmuCI	GTSAC	2 cut(s)	73, 343
NsiI	ATGCAT	1 cut(s)	23
NspI	RCATGY	2 cut(s)	25, 185
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	4 cut(s)	9, 55, 145, 466
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	6 cut(s)	161, 231, 247, 291, 313, 322
SfaNI	GCATC	2 cut(s)	250, 314
SfcI	CTRYAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	360, 421
SspI	AATATT	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	367
TasI	AATT	2 cut(s)	360, 421
TfiI	GAWTC	1 cut(s)	332
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	73, 343
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	2 cut(s)	73, 343
TspDTI	ATGAA	4 cut(s)	4, 17, 417, 495
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	2 cut(s)	360, 421
XceI	RCATGY	2 cut(s)	25, 185
XmnI	GAANNNNTTC	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.