Rab subfamily of small GTPases
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G47960 |
| fragaria_vesca | FvH4_7g00660 |
| malus_domestica | MD02G1315800.v1.1 MD07G1006300.v1.1 |
| prunus_persica | Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 |
| pyrus_communis | pycom02g26460 pycom07g00500 |
| rosa_chinensis | RchiOBHm_Chr1g0314881 |
| rosa_laevigata | RLG00000030758 |
| rosa_multiflora | Rmu_co8333785.1_g000001 Rmu_sc0002833.1_g000047 Rmu_sc0010489.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00331760 |
| rosa_rugosa | Rorug01G0002700 |
| rosa_samantha | Rh1AG013400 Rh1BG005100 Rh1DG006900 |
| rosa_wichuraiana | Rw1G000620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 236 |
| AciI | CCGC | 1 cut(s) | 236 |
| AcsI | RAATTY | 2 cut(s) | 8, 434 |
| AfaI | GTAC | 1 cut(s) | 414 |
| AgsI | TTSAA | 5 cut(s) | 25, 49, 108, 173, 486 |
| AluBI | AGCT | 3 cut(s) | 91, 197, 410 |
| AluI | AGCT | 3 cut(s) | 91, 197, 410 |
| Alw26I | GTCTC | 3 cut(s) | 461, 579, 626 |
| Ama87I | CYCGRG | 1 cut(s) | 395 |
| ApoI | RAATTY | 2 cut(s) | 8, 434 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 287, 319 |
| AsuHPI | GGTGA | 1 cut(s) | 250 |
| AvaI | CYCGRG | 1 cut(s) | 395 |
| BccI | CCATC | 1 cut(s) | 318 |
| BclI | TGATCA | 1 cut(s) | 310 |
| BcoDI | GTCTC | 3 cut(s) | 461, 579, 626 |
| BfaI | CTAG | 1 cut(s) | 99 |
| BfmI | CTRYAG | 1 cut(s) | 253 |
| BmeT110I | CYCGRG | 1 cut(s) | 395 |
| BmsI | GCATC | 1 cut(s) | 415 |
| BpmI | CTGGAG | 2 cut(s) | 600, 645 |
| Bsa29I | ATCGAT | 1 cut(s) | 177 |
| BsaJI | CCNNGG | 2 cut(s) | 420, 477 |
| Bse3DI | GCAATG | 1 cut(s) | 279 |
| BseCI | ATCGAT | 1 cut(s) | 177 |
| BseDI | CCNNGG | 2 cut(s) | 420, 477 |
| BseGI | GGATG | 1 cut(s) | 430 |
| BseMI | GCAATG | 1 cut(s) | 279 |
| BseMII | CTCAG | 2 cut(s) | 101, 212 |
| BseRI | GAGGAG | 2 cut(s) | 273, 597 |
| Bsh1285I | CGRYCG | 2 cut(s) | 144, 181 |
| BshVI | ATCGAT | 1 cut(s) | 177 |
| BsiEI | CGRYCG | 2 cut(s) | 144, 181 |
| BsiHKCI | CYCGRG | 1 cut(s) | 395 |
| BslFI | GGGAC | 2 cut(s) | 221, 412 |
| BsmAI | GTCTC | 3 cut(s) | 461, 579, 626 |
| BsmFI | GGGAC | 2 cut(s) | 221, 412 |
| BsoBI | CYCGRG | 1 cut(s) | 395 |
| Bsp143I | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| BspACI | CCGC | 1 cut(s) | 236 |
| BspCNI | CTCAG | 2 cut(s) | 100, 211 |
| BspDI | ATCGAT | 1 cut(s) | 177 |
| BsrBI | CCGCTC | 1 cut(s) | 236 |
| BsrDI | GCAATG | 1 cut(s) | 279 |
| BssECI | CCNNGG | 2 cut(s) | 420, 477 |
| BssMI | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| BssT1I | CCWWGG | 1 cut(s) | 477 |
| Bst4CI | ACNGT | 3 cut(s) | 228, 303, 514 |
| Bst6I | CTCTTC | 2 cut(s) | 595, 624 |
| BstDEI | CTNAG | 3 cut(s) | 87, 198, 609 |
| BstF5I | GGATG | 1 cut(s) | 430 |
| BstKTI | GATC | 5 cut(s) | 63, 144, 181, 313, 394 |
| BstMAI | GTCTC | 3 cut(s) | 461, 579, 626 |
| BstMBI | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| BstMCI | CGRYCG | 2 cut(s) | 144, 181 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 269 |
| BstNSI | RCATGY | 1 cut(s) | 350 |
| BstSFI | CTRYAG | 1 cut(s) | 253 |
| Bsu15I | ATCGAT | 1 cut(s) | 177 |
| BsuTUI | ATCGAT | 1 cut(s) | 177 |
| BtsCI | GGATG | 1 cut(s) | 430 |
| BtsI | GCAGTG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| ClaI | ATCGAT | 1 cut(s) | 177 |
| Csp6I | GTAC | 1 cut(s) | 413 |
| CviAII | CATG | 3 cut(s) | 314, 347, 463 |
| CviJI | RGCY | 5 cut(s) | 91, 197, 410, 476, 499 |
| CviKI_1 | RGCY | 5 cut(s) | 91, 197, 410, 476, 499 |
| CviQI | GTAC | 1 cut(s) | 413 |
| DdeI | CTNAG | 3 cut(s) | 87, 198, 609 |
| DpnI | GATC | 5 cut(s) | 62, 143, 180, 312, 393 |
| DpnII | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| Eam1104I | CTCTTC | 2 cut(s) | 595, 624 |
| EarI | CTCTTC | 2 cut(s) | 595, 624 |
| Eco130I | CCWWGG | 1 cut(s) | 477 |
| Eco88I | CYCGRG | 1 cut(s) | 395 |
| EcoT14I | CCWWGG | 1 cut(s) | 477 |
| ErhI | CCWWGG | 1 cut(s) | 477 |
| FaeI | CATG | 3 cut(s) | 317, 350, 466 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 41, 73 |
| FaqI | GGGAC | 2 cut(s) | 221, 412 |
| FatI | CATG | 3 cut(s) | 313, 346, 462 |
| FbaI | TGATCA | 1 cut(s) | 310 |
| FokI | GGATG | 1 cut(s) | 437 |
| FspBI | CTAG | 1 cut(s) | 99 |
| GsuI | CTGGAG | 2 cut(s) | 600, 645 |
| Hin1II | CATG | 3 cut(s) | 317, 350, 466 |
| HinfI | GANTC | 7 cut(s) | 68, 128, 482, 550, 575, 587, 638 |
| HphI | GGTGA | 1 cut(s) | 250 |
| Hpy166II | GTNNAC | 1 cut(s) | 283 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 30, 159, 201 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 108, 221, 397, 579 |
| Hpy8I | GTNNAC | 1 cut(s) | 283 |
| HpyAV | CCTTC | 2 cut(s) | 510, 563 |
| HpyCH4III | ACNGT | 3 cut(s) | 228, 303, 514 |
| HpyCH4V | TGCA | 2 cut(s) | 248, 601 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 269 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 198, 609 |
| Hsp92II | CATG | 3 cut(s) | 317, 350, 466 |
| Ksp22I | TGATCA | 1 cut(s) | 310 |
| Kzo9I | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| LmnI | GCTCC | 1 cut(s) | 260 |
| LpnPI | CCDG | 3 cut(s) | 201, 564, 609 |
| LweI | GCATC | 1 cut(s) | 415 |
| MaeI | CTAG | 1 cut(s) | 99 |
| MaeIII | GTNAC | 1 cut(s) | 238 |
| MalI | GATC | 5 cut(s) | 62, 143, 180, 312, 393 |
| MbiI | CCGCTC | 1 cut(s) | 236 |
| MboI | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| MboII | GAAGA | 4 cut(s) | 43, 344, 582, 641 |
| MluCI | AATT | 5 cut(s) | 8, 19, 335, 434, 534 |
| MlyI | GAGTC | 2 cut(s) | 62, 581 |
| MnlI | CCTC | 6 cut(s) | 251, 335, 415, 518, 559, 575 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 269 |
| NdeII | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| NlaIII | CATG | 3 cut(s) | 317, 350, 466 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| NspI | RCATGY | 1 cut(s) | 350 |
| PfeI | GAWTC | 5 cut(s) | 128, 482, 550, 575, 638 |
| Ple19I | CGATCG | 2 cut(s) | 144, 181 |
| PleI | GAGTC | 2 cut(s) | 62, 581 |
| PpsI | GAGTC | 2 cut(s) | 62, 581 |
| PvuI | CGATCG | 2 cut(s) | 144, 181 |
| RsaI | GTAC | 1 cut(s) | 414 |
| RsaNI | GTAC | 1 cut(s) | 413 |
| Sau3AI | GATC | 5 cut(s) | 60, 141, 178, 310, 391 |
| SchI | GAGTC | 2 cut(s) | 62, 581 |
| SetI | ASST | 6 cut(s) | 54, 93, 104, 199, 412, 655 |
| SfaNI | GCATC | 1 cut(s) | 415 |
| SfcI | CTRYAG | 1 cut(s) | 253 |
| Sse9I | AATT | 5 cut(s) | 8, 19, 335, 434, 534 |
| SsiI | CCGC | 1 cut(s) | 236 |
| SspMI | CTAG | 1 cut(s) | 99 |
| StyI | CCWWGG | 1 cut(s) | 477 |
| TaaI | ACNGT | 3 cut(s) | 228, 303, 514 |
| TaqI | TCGA | 6 cut(s) | 126, 150, 177, 232, 406, 532 |
| TasI | AATT | 5 cut(s) | 8, 19, 335, 434, 534 |
| TfiI | GAWTC | 5 cut(s) | 128, 482, 550, 575, 638 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 1 cut(s) | 451 |
| TspGWI | ACGGA | 1 cut(s) | 536 |
| TspRI | CASTG | 1 cut(s) | 217 |
| XapI | RAATTY | 2 cut(s) | 8, 434 |
| XceI | RCATGY | 1 cut(s) | 350 |
| XspI | CTAG | 1 cut(s) | 99 |