Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010834

Physical Location & Seq

Genomic Coordinates Reverse (-)

927300 .. 930166

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCGAATTTGCAGAGTAGTTTCAATCAGAAGATCGACTACGTGTTCAAGGTGGTGTTGATCGGAGACTCGGCGGTGGGTAAGTCTCAGCTCTTGGCTCGCTTTGCTCGGAATGAGTTCAGTTTGGAGTCCAAAGCAACCATTGGGGTTGAGTTCCAGACCAAGACGCTTCTGATCGACCACAAAACCATCAAGGCCCAGATTTGGGATACTGCTGGCCAAGAAAGATACAGGGCCGTGACAAGTGCATACTATAGGGGTTCAGTGGGGGCAATGCTGGTCTATGACATTACGAAGCCTCAGTCATTTGATCATGTAACGAGGTGGTTAGAGGAACTGAGGGGACATGCTGACAGCAATATTGTCGTCATGCTTGTTGGTAACAAATCTGACCTGGGGACGCTGCGAGCTGTACCATCTGAGGATGCAAAAGATTTTGCCCAGAGGGAGAACCTCTTCTTTATGGAGGCATCAGCTCTTGAAGCTACTAATGTTGAATCTGCATTTGTCACAGTCCTAACAGAAATTTATCGAGTAGTTGGCAAGAAGTCCCTCATTGCCAATGATGAAACAGAGTCTGGAGGGAATTCCTCACTTCTCAAGGGAACTACACTTATTGTCCCTACACAAGATCCTCTGCCTGAAGCAAAATCTGGCTGTTGCTTCTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0012505 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

224

Amino Acids

24.66

Weight (kDa)

5.7

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 134	2.3e-12	ADP-ribosylation factor family
Ras	PF00071	17 - 177	1.5e-61	Ras family
Roc	PF08477	17 - 131	5.1e-34	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47960
fragaria_vesca	FvH4_7g00660
malus_domestica	MD02G1315800.v1.1 MD07G1006300.v1.1
prunus_persica	Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1 Prupe.2G009000_v2.0.a1
pyrus_communis	pycom02g26460 pycom07g00500
rosa_chinensis	RchiOBHm_Chr1g0314881
rosa_laevigata	RLG00000030758
rosa_multiflora	Rmu_co8333785.1_g000001 Rmu_sc0002833.1_g000047 Rmu_sc0010489.1_g000007
rosa_roxburghii	Rroxscaffold_4G00331760
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013400 Rh1BG005100 Rh1DG006900
rosa_wichuraiana	Rw1G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	3 cut(s)	7, 525, 586
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	204, 205
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	25, 49, 482, 497
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	91, 410, 476, 485
AluI	AGCT	4 cut(s)	91, 410, 476, 485
Alw26I	GTCTC	2 cut(s)	60, 90
AlwI	GGATC	1 cut(s)	626
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	195, 217, 234
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	3 cut(s)	7, 525, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
Asp700I	GAANNNNTTC	2 cut(s)	116, 455
AspS9I	GGNCC	2 cut(s)	196, 234
BalI	TGGCCA	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	197, 424
BceAI	ACGGC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	60, 90
BfmI	CTRYAG	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	196, 234
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	415, 479
BpmI	CTGGAG	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 205
Bse3DI	GCAATG	2 cut(s)	279, 555
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	204, 205
BseMI	GCAATG	2 cut(s)	279, 555
BseMII	CTCAG	4 cut(s)	101, 314, 329, 411
BseXI	GCAGC	1 cut(s)	390
BshFI	GGCC	3 cut(s)	197, 219, 236
BslFI	GGGAC	4 cut(s)	357, 412, 535, 605
BslI	CCNNNNNNNGG	2 cut(s)	204, 205
BsmAI	GTCTC	2 cut(s)	60, 90
BsmFI	GGGAC	4 cut(s)	357, 412, 535, 605
BsnI	GGCC	3 cut(s)	197, 219, 236
Bsp143I	GATC	5 cut(s)	33, 60, 174, 310, 631
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	197, 219, 236
BspCNI	CTCAG	4 cut(s)	100, 313, 330, 412
BspPI	GGATC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	279, 555
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	5 cut(s)	33, 60, 174, 310, 631
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	3 cut(s)	100, 217, 408
BstDEI	CTNAG	4 cut(s)	87, 300, 338, 420
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	5 cut(s)	36, 63, 177, 313, 634
BstMAI	GTCTC	2 cut(s)	60, 90
BstMBI	GATC	5 cut(s)	33, 60, 174, 310, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 482
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	197, 219, 236
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	3 cut(s)	100, 217, 408
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	2 cut(s)	196, 234
CseI	GACGC	2 cut(s)	175, 409
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	3 cut(s)	314, 347, 370
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	87, 300, 338, 420
DpnI	GATC	5 cut(s)	35, 62, 176, 312, 633
DpnII	GATC	5 cut(s)	33, 60, 174, 310, 631
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	317, 350, 373
FaiI	YATR	8 cut(s)	250, 255, 285, 315, 348, 371, 464, 673
FaqI	GGGAC	4 cut(s)	357, 412, 535, 605
FatI	CATG	3 cut(s)	313, 346, 369
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	197, 219, 236
HgaI	GACGC	2 cut(s)	175, 409
Hin1II	CATG	3 cut(s)	317, 350, 373
HinfI	GANTC	4 cut(s)	68, 128, 497, 575
Hpy188I	TCNGA	6 cut(s)	30, 65, 111, 174, 391, 421
Hpy188III	TCNNGA	3 cut(s)	157, 479, 579
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	13, 248, 428, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 482
HpyF3I	CTNAG	4 cut(s)	87, 300, 338, 420
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	317, 350, 373
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	33, 60, 174, 310, 631
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	415, 479
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	4 cut(s)	238, 316, 380, 508
MalI	GATC	5 cut(s)	35, 62, 176, 312, 633
MboI	GATC	5 cut(s)	33, 60, 174, 310, 631
MboII	GAAGA	3 cut(s)	43, 448, 660
MflI	RGATCY	1 cut(s)	631
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	3 cut(s)	7, 525, 586
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	62, 137, 584
Mox20I	TGGCCA	1 cut(s)	219
MroXI	GAANNNNTTC	2 cut(s)	116, 455
MscI	TGGCCA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	2 cut(s)	104, 482
NdeII	GATC	5 cut(s)	33, 60, 174, 310, 631
NlaIII	CATG	3 cut(s)	317, 350, 373
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	238, 508
NspI	RCATGY	1 cut(s)	350
PdmI	GAANNNNTTC	2 cut(s)	116, 455
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	3 cut(s)	62, 136, 583
PpsI	GAGTC	3 cut(s)	62, 136, 583
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspPI	GGNCC	2 cut(s)	196, 234
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	5 cut(s)	33, 60, 174, 310, 631
Sau96I	GGNCC	2 cut(s)	196, 234
SchI	GAGTC	3 cut(s)	62, 137, 584
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	9 cut(s)	45, 54, 93, 326, 396, 412, 456, 478, 487
SfaNI	GCATC	2 cut(s)	415, 479
SfcI	CTRYAG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	7, 525, 586
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	5, 36, 177, 532
TasI	AATT	3 cut(s)	7, 525, 586
TfiI	GAWTC	1 cut(s)	497
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	238, 508
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	2 cut(s)	238, 508
TspDTI	ATGAA	2 cut(s)	582, 660
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	3 cut(s)	7, 525, 586
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	2 cut(s)	116, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.