pycom01g10490

Arabinogalactan peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016507
Physical Location & Seq
Reverse (-)
11252960 .. 11253500
541 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGGCTCTTTGCTTTGGATTTTCTAAAGCATTTTTCAGAGTTGTTCTAGTCTCTGCAATTGTCTTGTTCGCCATTCTATCCCCATCTACTGCTGCCACGCCCAAGCCCTCCGCTGCTGCTGCAACTCCTTCCTCCGCCCCTTCTCCCGCCGCCGCCGCCGCCGCCCCTGCCCCTGGCCCTTCCAGTGATGGAACTTCAATAGACCAAGGGATTGCATATGTGCTGATGCTAGTGGCTCTGGTGCTGACATATCTCATTCATCCTCTGGACGCATCGTCATCCTACAATTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AGP

Protein Analysis

99

Amino Acids

9.85

Weight (kDa)

6.5

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AGP PF06376 55 - 87 7.6e-17 Arabinogalactan peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53250
fragaria_vesca FvH4_7g15910 FvH4_7g15910
malus_domestica MD01G1076000.v1.1 MD07G1144900.v1.1
prunus_persica Prupe.2G183500_v2.0.a1
pyrus_communis pycom01g10490
rosa_chinensis RchiOBHm_Chr1g0358781
rosa_multiflora Rmu_sc0017529.1_g000002 Rmu_sc0031713.1_g000001
rosa_rugosa Rorug01G0265200
rosa_samantha Rh1CG263200 Rh1DG274200
rosa_wichuraiana Rw1G024820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 111, 135, 147, 150, 153, 156, 159, 162
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 198
AhdI GACNNNNNGTC 1 cut(s) 274
AjnI CCWGG 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 55
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 4 cut(s) 92, 113, 116, 119
AspS9I GGNCC 1 cut(s) 176
BbvI GCAGC 4 cut(s) 79, 100, 103, 106
BccI CCATC 2 cut(s) 91, 182
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 2 cut(s) 47, 230
BisI GCNGC 9 cut(s) 93, 114, 117, 120, 150, 153, 156, 159, 162
BlsI GCNGC 9 cut(s) 94, 115, 118, 121, 151, 154, 157, 160, 163
Bme1390I CCNGG 1 cut(s) 174
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 216, 281
BsaJI CCNNGG 2 cut(s) 172, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 172, 205
BseGI GGATG 2 cut(s) 259, 278
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 4 cut(s) 79, 100, 103, 106
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 55
BsnI GGCC 1 cut(s) 177
BspACI CCGC 8 cut(s) 111, 135, 147, 150, 153, 156, 159, 162
BspANI GGCC 1 cut(s) 177
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 172, 205
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 259, 278
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 5 cut(s) 119, 155, 158, 161, 167
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 4 cut(s) 79, 100, 103, 106
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 2 cut(s) 259, 278
BtsIMutI CAGTG 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 278
CviJI RGCY 4 cut(s) 5, 106, 177, 236
CviKI_1 RGCY 4 cut(s) 5, 106, 177, 236
DriI GACNNNNNGTC 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 274
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaiI YATR 3 cut(s) 217, 219, 250
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 9 cut(s) 93, 114, 117, 120, 150, 153, 156, 159, 162
FokI GGATG 2 cut(s) 246, 265
Fsp4HI GCNGC 9 cut(s) 93, 114, 117, 120, 150, 153, 156, 159, 162
FspBI CTAG 2 cut(s) 47, 230
GluI GCNGC 9 cut(s) 93, 114, 117, 120, 150, 153, 156, 159, 162
HaeIII GGCC 1 cut(s) 177
HgaI GACGC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 138, 150, 189
HpyCH4V TGCA 3 cut(s) 56, 122, 215
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 155, 158, 161, 167
LpnPI CCDG 6 cut(s) 159, 180, 186, 196, 224, 251
Lsp1109I GCAGC 4 cut(s) 79, 100, 103, 106
LweI GCATC 2 cut(s) 216, 281
MaeI CTAG 2 cut(s) 47, 230
MfeI CAATTG 1 cut(s) 57
MluCI AATT 2 cut(s) 57, 286
MnlI CCTC 3 cut(s) 118, 142, 273
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 119, 155, 158, 161, 167
NdeI CATATG 1 cut(s) 217
PkrI GCNGC 9 cut(s) 94, 115, 118, 121, 151, 154, 157, 160, 163
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspPI GGNCC 1 cut(s) 176
SatI GCNGC 9 cut(s) 93, 114, 117, 120, 150, 153, 156, 159, 162
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 174
SfaNI GCATC 2 cut(s) 216, 281
Sse9I AATT 2 cut(s) 57, 286
SsiI CCGC 8 cut(s) 111, 135, 147, 150, 153, 156, 159, 162
SspMI CTAG 2 cut(s) 47, 230
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 205
TasI AATT 2 cut(s) 57, 286
TauI GCSGC 5 cut(s) 152, 155, 158, 161, 164
TscAI CASTG 1 cut(s) 190
TseI GCWGC 4 cut(s) 92, 113, 116, 119
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 1 cut(s) 190
XspI CTAG 2 cut(s) 47, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.