pycom01g14500

Leukocyte receptor cluster

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0022524
Physical Location & Seq
Forward (+)
14638472 .. 14639762
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14500.4

Sequence Viewer

Length: 477 bp
ATGGCAAGCTTGTCAGTTGAAGCGAAAAGAGATGAAGCTGTTAAGCATGCTCTTGCGGTTCGTTCAGCTGTGACTTCAGGAAATTATGTTATGTTCTTCAGGCTCTACAAGACAGCTCCGAACTTGAGCACCTGCCTTATGGATCTCTATGTTGAAAAGATGCGGTATAAGGCAGTGAGCTGCATCTGTAGATCATATCGGCCTACGATACCTGTTCCTTACGTTGCTCAAATTCTGGGATTTACCACCATTACACCCACAAACGAGGAAAGCGAGGAGAAGGATTCAGAGGGATTGGACGAATGCATTGAATGGTTGAAAGTACACGGTGCATGCCTCACTGTTGATAACAACGGAGAAATGCAGCTTGATACAAAGCCTACATCCTCAAGTCTTTACATGCCGGAGACTGATGCGGTGTCCCACGGCGATGCCACTCTCGCCGTTAACGATTTTTTGACAAGGACACCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAC3_GANP

Protein Analysis

159

Amino Acids

17.54

Weight (kDa)

5.04

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022524)

Species Orthologous Gene IDs
pyrus_communis pycom01g14500
rosa_roxburghii Rroxscaffold_2G00140390
rosa_samantha Rh2BG163800 Rh2DG162700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 140
AciI CCGC 3 cut(s) 56, 163, 416
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 2 cut(s) 60, 82
AfaI GTAC 1 cut(s) 324
AgsI TTSAA 4 cut(s) 20, 155, 311, 319
AluBI AGCT 6 cut(s) 9, 38, 68, 116, 180, 367
AluI AGCT 6 cut(s) 9, 38, 68, 116, 180, 367
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 150
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 180, 364
ApoI RAATTY 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 167, 376
BceAI ACGGC 2 cut(s) 428, 442
BcoDI GTCTC 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 181, 365
BlsI GCNGC 2 cut(s) 182, 366
BmsI GCATC 4 cut(s) 150, 192, 403, 421
BpuEI CTTGAG 2 cut(s) 145, 373
BsaJI CCNNGG 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 167, 376
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 406
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 142, 191
BspACI CCGC 3 cut(s) 56, 163, 416
BspANI GGCC 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 2 cut(s) 142, 191
Bst4CI ACNGT 2 cut(s) 329, 343
BstC8I GCNNGC 3 cut(s) 7, 48, 334
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 1 cut(s) 383
BstKTI GATC 2 cut(s) 145, 194
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 2 cut(s) 142, 191
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNSI RCATGY 3 cut(s) 50, 336, 403
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 167, 376
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 339
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 7, 48, 334
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 47, 333, 400
CviJI RGCY 9 cut(s) 9, 38, 68, 103, 116, 180, 202, 367, 379
CviKI_1 RGCY 9 cut(s) 9, 38, 68, 103, 116, 180, 202, 367, 379
CviQI GTAC 1 cut(s) 323
DpnI GATC 2 cut(s) 144, 193
DpnII GATC 2 cut(s) 142, 191
Eco57I CTGAAG 2 cut(s) 60, 82
EcoT22I ATGCAT 1 cut(s) 308
FaeI CATG 3 cut(s) 50, 336, 403
FalI AAGNNNNNCTT 1 cut(s) 454
FaqI GGGAC 1 cut(s) 406
FatI CATG 3 cut(s) 46, 332, 399
Fnu4HI GCNGC 2 cut(s) 181, 365
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 2 cut(s) 181, 365
GluI GCNGC 2 cut(s) 181, 365
HaeIII GGCC 1 cut(s) 202
HapII CCGG 1 cut(s) 404
Hin1II CATG 3 cut(s) 50, 336, 403
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 1 cut(s) 284
HpaI GTTAAC 1 cut(s) 448
HpaII CCGG 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 325, 448
Hpy188I TCNGA 2 cut(s) 120, 289
Hpy188III TCNNGA 1 cut(s) 78
Hpy8I GTNNAC 2 cut(s) 325, 448
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 329, 343
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 183, 306, 332, 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 50, 336, 403
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 2 cut(s) 142, 191
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 63, 85, 145, 221, 225, 417
Lsp1109I GCAGC 2 cut(s) 167, 376
LweI GCATC 4 cut(s) 150, 192, 403, 421
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 144, 193
MboI GATC 2 cut(s) 142, 191
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 82, 231
MnlI CCTC 5 cut(s) 259, 268, 283, 347, 397
Mph1103I ATGCAT 1 cut(s) 308
MseI TTAA 2 cut(s) 42, 447
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 404
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeII GATC 2 cut(s) 142, 191
NlaIII CATG 3 cut(s) 50, 336, 403
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 308
NspI RCATGY 3 cut(s) 50, 336, 403
PaeI GCATGC 2 cut(s) 50, 336
PaqCI CACCTGC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 447
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 2 cut(s) 182, 366
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 2 cut(s) 42, 447
SatI GCNGC 2 cut(s) 181, 365
Sau3AI GATC 2 cut(s) 142, 191
SduI GDGCHC 1 cut(s) 131
SfaNI GCATC 4 cut(s) 150, 192, 403, 421
SfcI CTRYAG 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 124, 388
SmoI CTYRAG 2 cut(s) 124, 388
SphI GCATGC 2 cut(s) 50, 336
Sse9I AATT 2 cut(s) 82, 231
SsiI CCGC 3 cut(s) 56, 163, 416
TaaI ACNGT 2 cut(s) 329, 343
TaiI ACGT 1 cut(s) 225
TasI AATT 2 cut(s) 82, 231
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 42, 447
Tru9I TTAA 2 cut(s) 42, 447
TscAI CASTG 2 cut(s) 180, 346
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 180, 364
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 2 cut(s) 180, 346
XapI RAATTY 1 cut(s) 231
XceI RCATGY 3 cut(s) 50, 336, 403
Zsp2I ATGCAT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.