Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0022524

Physical Location & Seq

Genomic Coordinates Reverse (-)

14101344 .. 14112408

Gene Structure 11065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG162700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTCTTGATTGATCTTTATGTTGAAAAGATGCGGTTTAAGGCAGAGAGCTGCATGTGCCGATCATATCGGCCCATAATACATGTTTCATATGTTGCTCAAATTCTGGGGTTTACACCCATAAATGAGGAAAGTGGGGCCCAATTAAATGGAGACAGGGAAGGGGATAGGGAAATGGGGACAGAAGATTTGAAGCCAAGCAATGGTAATGGGCGCTCCTTGGAAGATGCTTGGCATCTTGCTCAACGATATGACAGAATGCGGCAAGAAGGCACGTCATTGTGTGTTATTTCGAACCTAGACAGGCTATTAAAGTTTCCAAATGCCAATCATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAC3_GANP

Protein Analysis

112

Amino Acids

12.9

Weight (kDa)

6.28

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022524)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g14500
rosa_roxburghii	Rroxscaffold_2G00140390
rosa_samantha	Rh2BG163800 Rh2DG162700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	203
AciI	CCGC	2 cut(s)	34, 262
AcsI	RAATTY	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	26, 193
AjiI	CACGTC	1 cut(s)	276
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	71, 138
ApaI	GGGCCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	102
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	72, 138, 139
AsuII	TTCGAA	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	217
BisI	GCNGC	2 cut(s)	52, 263
BlsI	GCNGC	2 cut(s)	53, 264
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	3 cut(s)	72, 138, 139
BmiI	GGNNCC	2 cut(s)	139, 140
BmsI	GCATC	3 cut(s)	21, 217, 244
Bpu14I	TTCGAA	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	73, 140
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	73, 140
Bsp119I	TTCGAA	1 cut(s)	293
Bsp120I	GGGCCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	13, 62
BspACI	CCGC	2 cut(s)	34, 262
BspANI	GGCC	2 cut(s)	73, 140
BspLI	GGNNCC	2 cut(s)	139, 140
BspT104I	TTCGAA	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	13, 62
BssT1I	CCWWGG	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	16, 65
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	13, 62
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	58, 86
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	73, 140
BtrI	CACGTC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	72, 138, 139
CviAII	CATG	2 cut(s)	55, 83
CviJI	RGCY	5 cut(s)	51, 73, 140, 196, 307
CviKI_1	RGCY	5 cut(s)	51, 73, 140, 196, 307
DpnI	GATC	2 cut(s)	15, 64
DpnII	GATC	2 cut(s)	13, 62
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	58, 86
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	54, 82
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	52, 263
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	52, 263
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	52, 263
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	73, 140
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	58, 86
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	155, 263
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	58, 86
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	13, 62
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	3 cut(s)	92, 142, 289
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	3 cut(s)	21, 217, 244
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	275
MalI	GATC	2 cut(s)	15, 64
MboI	GATC	2 cut(s)	13, 62
MboII	GAAGA	2 cut(s)	197, 236
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	2 cut(s)	102, 143
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	3 cut(s)	39, 146, 311
Mva1269I	GAATGC	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	13, 62
NlaIII	CATG	2 cut(s)	58, 86
NlaIV	GGNNCC	2 cut(s)	139, 140
NspI	RCATGY	2 cut(s)	58, 86
NspV	TTCGAA	1 cut(s)	293
PciI	ACATGT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	53, 264
PscI	ACATGT	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	139, 140
PspOMI	GGGCCC	1 cut(s)	138
PspPI	GGNCC	3 cut(s)	72, 138, 139
SaqAI	TTAA	3 cut(s)	39, 146, 311
SatI	GCNGC	2 cut(s)	52, 263
Sau3AI	GATC	2 cut(s)	13, 62
Sau96I	GGNCC	3 cut(s)	72, 138, 139
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	3 cut(s)	53, 278, 300
SfaNI	GCATC	3 cut(s)	21, 217, 244
SfuI	TTCGAA	1 cut(s)	293
Sse9I	AATT	2 cut(s)	102, 143
SsiI	CCGC	2 cut(s)	34, 262
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	293
TasI	AATT	2 cut(s)	102, 143
TauI	GCSGC	1 cut(s)	265
Tru1I	TTAA	3 cut(s)	39, 146, 311
Tru9I	TTAA	3 cut(s)	39, 146, 311
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	2 cut(s)	58, 86
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.