Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0022524

Physical Location & Seq

Genomic Coordinates Forward (+)

78618402 .. 78624128

Gene Structure 5727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTGAGAAAAACCGTAGGCAAAAATGGTGAGGTGCGAACAACATTTGCAGTAGGAGAAAGAGCAATGGAACCAGATGCATTACCATTGGTCATGTCCCCGAAACTATCACCATGTGTCACCATTGTAGTACGGGAAGGCAAAGAAAGCAATGGTAATGGGCGCTCCTTGGAAGATGCTTGGCATCTTGCTCAACGATATGACGAGAATGCGGCAAGAAGGCTGAAGCTCGTGAGGGAAACACCACGCAATTCGAGTGTTATGAAACTAGAAGCGCAGCGAAGCAAAGTTGCAAGAAAGTCGAATATGGGAATACTAGGGAAGGGAGCAGCTGCAGCAATGGCAGCAGTTGAGGCTCAACAACGAGATCGACTCTCCAAAGGACCATTGCCATGGTTTATTGCTTTGGTAAACCTAGTTATCAATCCGTCTGCGTCAAGGAAAGAGGATGGGAGTGACATCAAGGTGTTGTATGGTAATAGGCCGAAGAGCATTAGTTTGGAAGGGAACTACTCGAGATTTAAGGAGCCCAAATCTAAGTTGCAGCGGGGCGGTACACTTGCAGAAGCTGAGACCTTGAAGAAAGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007049 GO:0008150 GO:0009504 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0022402 GO:0022607 GO:0031410 GO:0031982 GO:0032506 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0072583 GO:0097708 GO:0098657 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

BAR SH3_9

Protein Analysis

197

Amino Acids

21.63

Weight (kDa)

10.19

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022524)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g14500
rosa_roxburghii	Rroxscaffold_2G00140390
rosa_samantha	Rh2BG163800 Rh2DG162700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	212, 547, 552
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	2 cut(s)	132, 556
AgsI	TTSAA	1 cut(s)	580
AluBI	AGCT	3 cut(s)	229, 332, 569
AluI	AGCT	3 cut(s)	229, 332, 569
Alw26I	GTCTC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	514
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	6 cut(s)	277, 329, 332, 335, 344, 544
AspLEI	GCGC	2 cut(s)	165, 277
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	3 cut(s)	41, 102, 112
AvaI	CYCGRG	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	531
BauI	CACGAG	1 cut(s)	230
BbvI	GCAGC	6 cut(s)	289, 319, 341, 347, 356, 556
BccI	CCATC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	3 cut(s)	269, 317, 416
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	7 cut(s)	213, 278, 330, 333, 336, 345, 545
BlsI	GCNGC	7 cut(s)	214, 279, 331, 334, 337, 346, 546
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	72, 528
BmsI	GCATC	3 cut(s)	67, 166, 193
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	168, 392
Bse3DI	GCAATG	4 cut(s)	72, 157, 345, 386
BseDI	CCNNGG	2 cut(s)	168, 392
BseGI	GGATG	1 cut(s)	454
BseMI	GCAATG	4 cut(s)	72, 157, 345, 386
BseMII	CTCAG	1 cut(s)	561
BseXI	GCAGC	6 cut(s)	289, 319, 341, 347, 356, 556
BshFI	GGCC	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	484
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	367
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	3 cut(s)	212, 547, 552
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	72, 528
BspMAI	CTGCAG	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	566
BsrDI	GCAATG	4 cut(s)	72, 157, 345, 386
BssECI	CCNNGG	2 cut(s)	168, 392
BssMI	GATC	1 cut(s)	367
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	168, 392
Bst2BI	CACGAG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	482
BstDEI	CTNAG	2 cut(s)	537, 570
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	165, 277
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 335, 341, 344, 353
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	6 cut(s)	289, 319, 341, 347, 356, 556
BstXI	CCANNNNNNTGG	1 cut(s)	393
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	2 cut(s)	165, 277
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	131, 555
CviAII	CATG	3 cut(s)	94, 114, 393
CviJI	RGCY	7 cut(s)	223, 229, 332, 356, 484, 529, 569
CviKI_1	RGCY	7 cut(s)	223, 229, 332, 356, 484, 529, 569
CviQI	GTAC	2 cut(s)	131, 555
DdeI	CTNAG	2 cut(s)	537, 570
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraIII	CACNNNGTG	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	168, 392
Eco24I	GRGCYC	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	168, 392
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	2 cut(s)	168, 392
FaeI	CATG	3 cut(s)	97, 117, 396
FaiI	YATR	7 cut(s)	95, 115, 201, 263, 308, 394, 474
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	3 cut(s)	93, 113, 392
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	7 cut(s)	213, 278, 330, 333, 336, 345, 545
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	7 cut(s)	213, 278, 330, 333, 336, 345, 545
FspBI	CTAG	3 cut(s)	269, 317, 416
GlaI	GCGC	2 cut(s)	164, 276
GluI	GCNGC	7 cut(s)	213, 278, 330, 333, 336, 345, 545
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	484
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	2 cut(s)	165, 277
Hin1II	CATG	3 cut(s)	97, 117, 396
Hin6I	GCGC	2 cut(s)	163, 275
HinP1I	GCGC	2 cut(s)	163, 275
HinfI	GANTC	1 cut(s)	372
HphI	GGTGA	3 cut(s)	41, 102, 112
Hpy166II	GTNNAC	2 cut(s)	412, 557
Hpy188III	TCNNGA	2 cut(s)	232, 516
Hpy8I	GTNNAC	2 cut(s)	412, 557
HpyAV	CCTTC	4 cut(s)	131, 213, 316, 497
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	50, 80, 293, 335, 544, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 335, 341, 344, 353
HpyF3I	CTNAG	2 cut(s)	537, 570
Hsp92II	CATG	3 cut(s)	97, 117, 396
HspAI	GCGC	2 cut(s)	163, 275
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	482
LmnI	GCTCC	3 cut(s)	170, 326, 526
LpnPI	CCDG	1 cut(s)	87
Lsp1109I	GCAGC	6 cut(s)	289, 319, 341, 347, 356, 556
LweI	GCATC	3 cut(s)	67, 166, 193
MaeI	CTAG	3 cut(s)	269, 317, 416
MaeIII	GTNAC	2 cut(s)	118, 455
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	185, 499, 592
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	366
MnlI	CCTC	4 cut(s)	25, 228, 346, 439
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	2 cut(s)	391, 464
MspA1I	CMGCKG	2 cut(s)	332, 547
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	5 cut(s)	147, 335, 341, 344, 353
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	3 cut(s)	97, 117, 396
NlaIV	GGNNCC	2 cut(s)	72, 528
NmuCI	GTSAC	2 cut(s)	118, 455
NsiI	ATGCAT	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	482
PctI	GAATGC	1 cut(s)	214
PkrI	GCNGC	7 cut(s)	214, 279, 331, 334, 337, 346, 546
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	72, 528
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	132, 556
RsaNI	GTAC	2 cut(s)	131, 555
RseI	CAYNNNNRTG	2 cut(s)	391, 464
SapI	GCTCTTC	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	7 cut(s)	213, 278, 330, 333, 336, 345, 545
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	8 cut(s)	36, 231, 334, 417, 468, 571, 578, 589
SfaNI	GCATC	3 cut(s)	67, 166, 193
SfcI	CTRYAG	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	514
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	514
SmiMI	CAYNNNNRTG	2 cut(s)	391, 464
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	3 cut(s)	212, 547, 552
SspMI	CTAG	3 cut(s)	269, 317, 416
StyI	CCWWGG	2 cut(s)	168, 392
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	4 cut(s)	254, 302, 370, 515
TasI	AATT	1 cut(s)	250
TauI	GCSGC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TseFI	GTSAC	2 cut(s)	118, 455
TseI	GCWGC	6 cut(s)	277, 329, 332, 335, 344, 544
Tsp45I	GTSAC	2 cut(s)	118, 455
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	383
XhoI	CTCGAG	1 cut(s)	514
XspI	CTAG	3 cut(s)	269, 317, 416
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.