Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0022524

Physical Location & Seq

Genomic Coordinates Reverse (-)

14385904 .. 14396968

Gene Structure 11065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG163800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTCTTGATTGATCTTTATGTTGAAAAGATGCGGTTTAAGGCAGAGAGCTGCATGTGCCGATCATATCGGCCCATAATACATGTTTCATATGTTGCTCAAATTCTGGGGTTTACACCCATAAATGAGGAAAGTGGGGCCCAATTAAATGAGTTGATGAGGGCAAATCAAGTGAAGAATGGGGTAGTTTGCATTAATAATGGAGACAGGGAAGGGGATAGGGAAATGGGGACAGAAGATTTGAAGCCAAGCAATGGTAATGGGCGCTCCTTGGAAGATGCTTGGCATCTTGCTCAACGATATGACAGAATGCGGCAAGAAGGCACGTCATTGTGTGTTATTTCGAACCTAGACAGGCTATTAAAGTTTCCAAATGCCAATCATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAC3_GANP

Protein Analysis

129

Amino Acids

14.78

Weight (kDa)

6.82

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022524)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g14500
rosa_roxburghii	Rroxscaffold_2G00140390
rosa_samantha	Rh2BG163800 Rh2DG162700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AciI	CCGC	2 cut(s)	34, 313
AcsI	RAATTY	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	26, 244
AjiI	CACGTC	1 cut(s)	327
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	2 cut(s)	71, 138
ApaI	GGGCCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	102
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	72, 138, 139
AsuII	TTCGAA	1 cut(s)	344
BaeGI	GKGCMC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	2 cut(s)	52, 314
BlsI	GCNGC	2 cut(s)	53, 315
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	3 cut(s)	72, 138, 139
BmiI	GGNNCC	2 cut(s)	139, 140
BmsI	GCATC	3 cut(s)	21, 268, 295
Bpu14I	TTCGAA	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	38
BshFI	GGCC	2 cut(s)	73, 140
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	73, 140
Bsp119I	TTCGAA	1 cut(s)	344
Bsp120I	GGGCCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	13, 62
BspACI	CCGC	2 cut(s)	34, 313
BspANI	GGCC	2 cut(s)	73, 140
BspLI	GGNNCC	2 cut(s)	139, 140
BspT104I	TTCGAA	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	13, 62
BssT1I	CCWWGG	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	16, 65
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	13, 62
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	58, 86
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	73, 140
BtrI	CACGTC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	3 cut(s)	72, 138, 139
CviAII	CATG	2 cut(s)	55, 83
CviJI	RGCY	5 cut(s)	51, 73, 140, 247, 358
CviKI_1	RGCY	5 cut(s)	51, 73, 140, 247, 358
DpnI	GATC	2 cut(s)	15, 64
DpnII	GATC	2 cut(s)	13, 62
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	58, 86
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	54, 82
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	52, 314
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	52, 314
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	52, 314
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	73, 140
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	58, 86
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	206, 314
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	54, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	58, 86
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	13, 62
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	3 cut(s)	92, 193, 340
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	3 cut(s)	21, 268, 295
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	326
MalI	GATC	2 cut(s)	15, 64
MboI	GATC	2 cut(s)	13, 62
MboII	GAAGA	3 cut(s)	187, 248, 287
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	2 cut(s)	102, 143
MnlI	CCTC	2 cut(s)	121, 153
MseI	TTAA	4 cut(s)	39, 146, 195, 362
Mva1269I	GAATGC	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	13, 62
NlaIII	CATG	2 cut(s)	58, 86
NlaIV	GGNNCC	2 cut(s)	139, 140
NspI	RCATGY	2 cut(s)	58, 86
NspV	TTCGAA	1 cut(s)	344
PciI	ACATGT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	53, 315
PscI	ACATGT	1 cut(s)	82
PshBI	ATTAAT	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	139, 140
PspOMI	GGGCCC	1 cut(s)	138
PspPI	GGNCC	3 cut(s)	72, 138, 139
SaqAI	TTAA	4 cut(s)	39, 146, 195, 362
SatI	GCNGC	2 cut(s)	52, 314
Sau3AI	GATC	2 cut(s)	13, 62
Sau96I	GGNCC	3 cut(s)	72, 138, 139
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	3 cut(s)	53, 329, 351
SfaNI	GCATC	3 cut(s)	21, 268, 295
SfuI	TTCGAA	1 cut(s)	344
Sse9I	AATT	2 cut(s)	102, 143
SsiI	CCGC	2 cut(s)	34, 313
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	102, 143
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	4 cut(s)	39, 146, 195, 362
Tru9I	TTAA	4 cut(s)	39, 146, 195, 362
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	254
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	2 cut(s)	58, 86
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.