pycom01g15700

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014913
Physical Location & Seq
Forward (+)
15492054 .. 15493089
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
ATGCGCACAGTAGGCCCAGGTGATACCCACTGCCACTCATCAGCAACCTCCTCATTTTCTTTCCTCCATCTCCCTTTAAATACCAATCTCACTCACCATTCCTTCCCCAAACTTACTCGCAAACCCACTGATTTTTCACTTGTGATCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAACCCCAAGTAATCAAAGGCACAAAAGATACCAGCTTTTTAGAGAAATGGCTTCTGTTTCTGTACCTGCAGCTGGCGGCAGTGCTTCTACTGCAAGTGCTTCTCATCACCACCCGCCTCCTTTTTACTTCGACGAGAAGTGGAAGCTGTCGAAGAAAGGAGGGTTGTCGAGATCGAGCCGTTCATCATCTTCCATTCATCTGATGAAGAATTCATCGCAGTCGAATCGACGGTGCGCGTTTTCCAGAAAGTGTGCGAGGTTGGTGAAGGAGCAGAGAGCTCGGTTCTACATCGTGAGGCGCTGCGTCACCATGCTCATCTGCTGGCACGACTACAGCGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

177

Amino Acids

19.86

Weight (kDa)

10.65

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 151 - 169 4.6e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39705
malus_domestica MD01G1136300.v1.1 MD07G1201200.v1.1
prunus_persica Prupe.2G237800_v2.0.a1
pyrus_communis pycom01g15700 pycom07g18820
rosa_chinensis RchiOBHm_Chr1g0367921
rosa_laevigata RLG00000027258
rosa_multiflora Rmu_ssc0000395.1_g000046
rosa_roxburghii Rroxscaffold_4G00289130
rosa_rugosa Rorug01G0337600
rosa_samantha Rh1AG344500 Rh1BG306600 Rh1CG322200 Rh1DG338800
rosa_wichuraiana Rw1G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 259
AccII CGCG 1 cut(s) 422
AciI CCGC 2 cut(s) 261, 299
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 257
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 4 cut(s) 220, 257, 331, 464
AluI AGCT 4 cut(s) 220, 257, 331, 464
Alw21I GWGCWC 1 cut(s) 466
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 254, 486
ApoI RAATTY 1 cut(s) 394
AspLEI GCGC 3 cut(s) 6, 422, 486
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 5 cut(s) 32, 86, 284, 460, 484
BanII GRGCYC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 266, 473
BccI CCATC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 4 cut(s) 392, 426, 446, 480
BciT130I CCWGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 252, 517
BfoI RGCGCY 1 cut(s) 487
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 3 cut(s) 255, 262, 487
BlsI GCNGC 3 cut(s) 256, 263, 488
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 266, 473
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 2 cut(s) 144, 356
BspACI CCGC 2 cut(s) 261, 299
BspANI GGCC 1 cut(s) 15
BspFNI CGCG 1 cut(s) 422
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 144, 356
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 10, 417
BstC8I GCNNGC 2 cut(s) 259, 509
BstFNI CGCG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 487
BstHHI GCGC 3 cut(s) 6, 422, 486
BstKTI GATC 2 cut(s) 147, 359
BstMBI GATC 2 cut(s) 144, 356
BstMWI GCNNNNNNNGC 2 cut(s) 12, 275
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 2 cut(s) 252, 517
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 266, 473
BsuRI GGCC 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 384
BtsI GCAGTG 2 cut(s) 28, 271
BtsIMutI CAGTG 3 cut(s) 28, 126, 271
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 259, 509
CfoI GCGC 3 cut(s) 6, 422, 486
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 478
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 496
CviJI RGCY 7 cut(s) 15, 220, 236, 257, 331, 363, 464
CviKI_1 RGCY 7 cut(s) 15, 220, 236, 257, 331, 363, 464
CviQI GTAC 1 cut(s) 248
DpnI GATC 2 cut(s) 146, 358
DpnII GATC 2 cut(s) 144, 356
DraI TTTAAA 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 466
FaeI CATG 1 cut(s) 499
FaiI YATR 2 cut(s) 497, 529
FatI CATG 1 cut(s) 495
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 255, 262, 487
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 3 cut(s) 255, 262, 487
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 1 cut(s) 183
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 421, 485
GluI GCNGC 3 cut(s) 255, 262, 487
HaeII RGCGCY 1 cut(s) 487
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 1 cut(s) 478
HhaI GCGC 3 cut(s) 6, 422, 486
Hin1II CATG 1 cut(s) 499
Hin6I GCGC 3 cut(s) 4, 420, 484
HinP1I GCGC 3 cut(s) 4, 420, 484
HinfI GANTC 2 cut(s) 409, 524
HphI GGTGA 5 cut(s) 32, 86, 284, 460, 484
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 4 cut(s) 183, 354, 429, 478
Hpy99I CGWCG 2 cut(s) 320, 417
HpyAV CCTTC 2 cut(s) 112, 445
HpyCH4III ACNGT 2 cut(s) 10, 417
HpyCH4V TGCA 2 cut(s) 254, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 275
Hsp92II CATG 1 cut(s) 499
HspAI GCGC 3 cut(s) 4, 420, 484
Kzo9I GATC 2 cut(s) 144, 356
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 7 cut(s) 3, 30, 230, 243, 264, 442, 493
Lsp1109I GCAGC 2 cut(s) 266, 473
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 490
MalI GATC 2 cut(s) 146, 358
MboI GATC 2 cut(s) 144, 356
MboII GAAGA 4 cut(s) 139, 349, 366, 403
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 1 cut(s) 394
MnlI CCTC 7 cut(s) 58, 61, 74, 312, 338, 435, 474
MseI TTAA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 12, 275
NdeII GATC 2 cut(s) 144, 356
NlaIII CATG 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 490
NsbI TGCGCA 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PfeI GAWTC 2 cut(s) 409, 524
PkrI GCNGC 3 cut(s) 256, 263, 488
Psp124BI GAGCTC 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SacI GAGCTC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 3 cut(s) 255, 262, 487
Sau3AI GATC 2 cut(s) 144, 356
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 466
SetI ASST 8 cut(s) 22, 50, 222, 253, 259, 333, 446, 466
SfcI CTRYAG 2 cut(s) 252, 517
Sse9I AATT 1 cut(s) 394
SsiI CCGC 2 cut(s) 261, 299
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 2 cut(s) 10, 417
TaqI TCGA 6 cut(s) 315, 335, 353, 359, 407, 412
TasI AATT 1 cut(s) 394
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 2 cut(s) 409, 524
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 3 cut(s) 35, 133, 271
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 2 cut(s) 254, 486
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 5 cut(s) 357, 371, 387, 404, 516
TspRI CASTG 3 cut(s) 35, 133, 271
XapI RAATTY 1 cut(s) 394
XbaI TCTAGA 1 cut(s) 182
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.