No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g26360 FvH4_7g26360 FvH4_7g26360 FvH4_7g26360 FvH4_7g26360 FvH4_7g26360 |
| malus_domestica | MD01G1172700.v1.1 MD07G1239000.v1.1 |
| prunus_persica | Prupe.2G267800_v2.0.a1 Prupe.2G267800_v2.0.a1 |
| pyrus_communis | pycom01g18430 pycom01g18450 pycom07g21500 |
| rosa_chinensis | RchiOBHm_Chr1g0372921 |
| rosa_laevigata | RLG00000026866 |
| rosa_multiflora | Rmu_ssc0000425.1_g000017 |
| rosa_roxburghii | Rroxscaffold_4G00284610 |
| rosa_rugosa | Rorug01G0374900 |
| rosa_samantha | Rh1AG383400 Rh1BG347300 Rh1CG360700 Rh1DG378200 |
| rosa_wichuraiana | Rw1G033780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1983, 2167 |
| Acc36I | ACCTGC | 1 cut(s) | 2347 |
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AciI | CCGC | 6 cut(s) | 153, 181, 389, 638, 1996, 2352 |
| AclWI | GGATC | 1 cut(s) | 1670 |
| AcoI | YGGCCR | 1 cut(s) | 1190 |
| AcsI | RAATTY | 4 cut(s) | 4, 943, 993, 2126 |
| AcuI | CTGAAG | 5 cut(s) | 552, 708, 1881, 1938, 2211 |
| AdeI | CACNNNGTG | 1 cut(s) | 1298 |
| AfaI | GTAC | 5 cut(s) | 433, 616, 1546, 2217, 2258 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 910, 1565, 2358 |
| AflIII | ACRYGT | 1 cut(s) | 1786 |
| AjnI | CCWGG | 1 cut(s) | 51 |
| Alw21I | GWGCWC | 3 cut(s) | 410, 464, 1370 |
| Alw26I | GTCTC | 2 cut(s) | 507, 1772 |
| AlwI | GGATC | 1 cut(s) | 1670 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 590, 2017, 2339 |
| Ama87I | CYCGRG | 1 cut(s) | 1558 |
| AoxI | GGCC | 3 cut(s) | 1190, 1717, 1914 |
| ApoI | RAATTY | 4 cut(s) | 4, 943, 993, 2126 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2227 |
| AspS9I | GGNCC | 3 cut(s) | 521, 1568, 2336 |
| AsuC2I | CCSGG | 4 cut(s) | 711, 1296, 1559, 1560 |
| AsuHPI | GGTGA | 7 cut(s) | 296, 950, 1143, 1155, 1463, 1501, 1669 |
| AsuII | TTCGAA | 1 cut(s) | 360 |
| AvaI | CYCGRG | 1 cut(s) | 1558 |
| AvaII | GGWCC | 3 cut(s) | 521, 1568, 2336 |
| BalI | TGGCCA | 1 cut(s) | 1192 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| BanII | GRGCYC | 4 cut(s) | 410, 464, 1370, 1559 |
| BbsI | GAAGAC | 2 cut(s) | 81, 2220 |
| Bbv12I | GWGCWC | 3 cut(s) | 410, 464, 1370 |
| BccI | CCATC | 4 cut(s) | 450, 793, 1201, 1883 |
| BciT130I | CCWGG | 1 cut(s) | 53 |
| BcnI | CCSGG | 4 cut(s) | 711, 1296, 1559, 1560 |
| BcoDI | GTCTC | 2 cut(s) | 507, 1772 |
| BfaI | CTAG | 7 cut(s) | 159, 258, 672, 948, 1110, 1233, 2172 |
| BfmI | CTRYAG | 2 cut(s) | 120, 2331 |
| BfuAI | ACCTGC | 1 cut(s) | 2347 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1220 |
| BmcAI | AGTACT | 1 cut(s) | 616 |
| Bme1390I | CCNGG | 5 cut(s) | 53, 711, 1296, 1559, 1560 |
| Bme18I | GGWCC | 3 cut(s) | 521, 1568, 2336 |
| BmeT110I | CYCGRG | 1 cut(s) | 1558 |
| BmgT120I | GGNCC | 3 cut(s) | 521, 1568, 2336 |
| BmiI | GGNNCC | 2 cut(s) | 558, 1740 |
| BmrFI | CCNGG | 5 cut(s) | 53, 711, 1296, 1559, 1560 |
| BmrI | ACTGGG | 1 cut(s) | 213 |
| BmuI | ACTGGG | 1 cut(s) | 213 |
| BoxI | GACNNNNGTC | 1 cut(s) | 519 |
| BpiI | GAAGAC | 2 cut(s) | 81, 2220 |
| BpmI | CTGGAG | 1 cut(s) | 531 |
| Bpu10I | CCTNAGC | 1 cut(s) | 463 |
| Bpu14I | TTCGAA | 1 cut(s) | 360 |
| BpuEI | CTTGAG | 3 cut(s) | 834, 1629, 1926 |
| BpuMI | CCSGG | 4 cut(s) | 711, 1296, 1559, 1560 |
| BsaJI | CCNNGG | 2 cut(s) | 51, 1558 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 451, 481, 691, 721 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 910, 1565, 2358 |
| Bse118I | RCCGGY | 1 cut(s) | 634 |
| Bse1I | ACTGG | 5 cut(s) | 17, 208, 524, 1514, 2167 |
| Bse3DI | GCAATG | 3 cut(s) | 325, 990, 1844 |
| BseBI | CCWGG | 1 cut(s) | 53 |
| BseDI | CCNNGG | 2 cut(s) | 51, 1558 |
| BseGI | GGATG | 5 cut(s) | 336, 397, 1657, 2101, 2206 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 910, 1565, 2358 |
| BseMI | GCAATG | 3 cut(s) | 325, 990, 1844 |
| BseMII | CTCAG | 5 cut(s) | 84, 303, 477, 1109, 2233 |
| BseNI | ACTGG | 5 cut(s) | 17, 208, 524, 1514, 2167 |
| BseRI | GAGGAG | 3 cut(s) | 122, 1587, 1919 |
| BshFI | GGCC | 3 cut(s) | 1192, 1719, 1916 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BsiHKAI | GWGCWC | 3 cut(s) | 410, 464, 1370 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1558 |
| BsiSI | CCGG | 4 cut(s) | 635, 710, 1296, 1559 |
| BslFI | GGGAC | 2 cut(s) | 1906, 1971 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 910, 1565, 2358 |
| BsmAI | GTCTC | 2 cut(s) | 507, 1772 |
| BsmFI | GGGAC | 2 cut(s) | 1906, 1971 |
| BsnI | GGCC | 3 cut(s) | 1192, 1719, 1916 |
| BsoBI | CYCGRG | 1 cut(s) | 1558 |
| Bsp119I | TTCGAA | 1 cut(s) | 360 |
| Bsp1286I | GDGCHC | 4 cut(s) | 410, 464, 1370, 1559 |
| Bsp143I | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| BspACI | CCGC | 6 cut(s) | 153, 181, 389, 638, 1996, 2352 |
| BspANI | GGCC | 3 cut(s) | 1192, 1719, 1916 |
| BspCNI | CTCAG | 5 cut(s) | 85, 304, 476, 1108, 2232 |
| BspLI | GGNNCC | 2 cut(s) | 558, 1740 |
| BspMAI | CTGCAG | 2 cut(s) | 124, 2335 |
| BspMI | ACCTGC | 1 cut(s) | 2347 |
| BspPI | GGATC | 1 cut(s) | 1670 |
| BspQI | GCTCTTC | 1 cut(s) | 2132 |
| BspT104I | TTCGAA | 1 cut(s) | 360 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 3 cut(s) | 325, 990, 1844 |
| BsrFI | RCCGGY | 1 cut(s) | 634 |
| BsrI | ACTGG | 5 cut(s) | 17, 208, 524, 1514, 2167 |
| BssAI | RCCGGY | 1 cut(s) | 634 |
| BssECI | CCNNGG | 2 cut(s) | 51, 1558 |
| BssMI | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| Bst2UI | CCWGG | 1 cut(s) | 53 |
| Bst4CI | ACNGT | 5 cut(s) | 518, 1336, 1980, 2213, 2256 |
| Bst6I | CTCTTC | 4 cut(s) | 273, 911, 2108, 2132 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 47, 2339 |
| BstBI | TTCGAA | 1 cut(s) | 360 |
| BstC8I | GCNNGC | 6 cut(s) | 39, 957, 1101, 1173, 1230, 1398 |
| BstDEI | CTNAG | 5 cut(s) | 93, 312, 463, 1095, 2219 |
| BstEII | GGTNACC | 2 cut(s) | 1249, 1489 |
| BstF5I | GGATG | 5 cut(s) | 336, 397, 1657, 2101, 2206 |
| BstKTI | GATC | 5 cut(s) | 379, 595, 610, 1678, 1810 |
| BstMAI | GTCTC | 2 cut(s) | 507, 1772 |
| BstMBI | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 47, 392, 826, 1220, 1229, 1696, 1964, 2339, 2348 |
| BstNI | CCWGG | 1 cut(s) | 53 |
| BstNSI | RCATGY | 1 cut(s) | 1790 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 519 |
| BstPI | GGTNACC | 2 cut(s) | 1249, 1489 |
| BstSCI | CCNGG | 5 cut(s) | 51, 709, 1294, 1557, 1558 |
| BstSFI | CTRYAG | 2 cut(s) | 120, 2331 |
| BstV2I | GAAGAC | 2 cut(s) | 81, 2220 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1890 |
| BsuRI | GGCC | 3 cut(s) | 1192, 1719, 1916 |
| BtgZI | GCGATG | 1 cut(s) | 1209 |
| BtsCI | GGATG | 5 cut(s) | 336, 397, 1657, 2101, 2206 |
| BtsI | GCAGTG | 3 cut(s) | 1023, 1407, 1510 |
| BtsIMutI | CAGTG | 7 cut(s) | 523, 531, 1023, 1407, 1510, 1521, 2218 |
| BveI | ACCTGC | 1 cut(s) | 2347 |
| Cac8I | GCNNGC | 6 cut(s) | 39, 957, 1101, 1173, 1230, 1398 |
| CaiI | CAGNNNCTG | 3 cut(s) | 590, 2017, 2339 |
| Cfr10I | RCCGGY | 1 cut(s) | 634 |
| Cfr13I | GGNCC | 3 cut(s) | 521, 1568, 2336 |
| Cfr9I | CCCGGG | 1 cut(s) | 1558 |
| Csp6I | GTAC | 5 cut(s) | 432, 615, 1545, 2216, 2257 |
| CviAII | CATG | 3 cut(s) | 1787, 1918, 1926 |
| CviQI | GTAC | 5 cut(s) | 432, 615, 1545, 2216, 2257 |
| DdeI | CTNAG | 5 cut(s) | 93, 312, 463, 1095, 2219 |
| DpnI | GATC | 5 cut(s) | 378, 594, 609, 1677, 1809 |
| DpnII | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| DraI | TTTAAA | 1 cut(s) | 979 |
| DraIII | CACNNNGTG | 1 cut(s) | 1298 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1983, 2167 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1983, 2167 |
| EaeI | YGGCCR | 1 cut(s) | 1190 |
| Eam1104I | CTCTTC | 4 cut(s) | 273, 911, 2108, 2132 |
| EarI | CTCTTC | 4 cut(s) | 273, 911, 2108, 2132 |
| EciI | GGCGGA | 1 cut(s) | 1985 |
| Ecl136II | GAGCTC | 3 cut(s) | 408, 462, 1368 |
| Eco24I | GRGCYC | 4 cut(s) | 410, 464, 1370, 1559 |
| Eco47I | GGWCC | 3 cut(s) | 521, 1568, 2336 |
| Eco53kI | GAGCTC | 3 cut(s) | 408, 462, 1368 |
| Eco57I | CTGAAG | 5 cut(s) | 552, 708, 1881, 1938, 2211 |
| Eco88I | CYCGRG | 1 cut(s) | 1558 |
| Eco91I | GGTNACC | 2 cut(s) | 1249, 1489 |
| EcoICRI | GAGCTC | 3 cut(s) | 408, 462, 1368 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2336 |
| EcoO65I | GGTNACC | 2 cut(s) | 1249, 1489 |
| EcoRI | GAATTC | 2 cut(s) | 943, 993 |
| EcoRII | CCWGG | 1 cut(s) | 51 |
| EcoT38I | GRGCYC | 4 cut(s) | 410, 464, 1370, 1559 |
| FaeI | CATG | 3 cut(s) | 1790, 1921, 1929 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 859, 891, 2105, 2137 |
| FaqI | GGGAC | 2 cut(s) | 1906, 1971 |
| FatI | CATG | 3 cut(s) | 1786, 1917, 1925 |
| FokI | GGATG | 5 cut(s) | 343, 404, 1664, 2108, 2213 |
| FriOI | GRGCYC | 4 cut(s) | 410, 464, 1370, 1559 |
| FspBI | CTAG | 7 cut(s) | 159, 258, 672, 948, 1110, 1233, 2172 |
| GsuI | CTGGAG | 1 cut(s) | 531 |
| HaeIII | GGCC | 3 cut(s) | 1192, 1719, 1916 |
| HapII | CCGG | 4 cut(s) | 635, 710, 1296, 1559 |
| Hin1II | CATG | 3 cut(s) | 1790, 1921, 1929 |
| HincII | GTYRAC | 3 cut(s) | 414, 643, 1792 |
| HindII | GTYRAC | 3 cut(s) | 414, 643, 1792 |
| HpaI | GTTAAC | 2 cut(s) | 414, 643 |
| HpaII | CCGG | 4 cut(s) | 635, 710, 1296, 1559 |
| HphI | GGTGA | 7 cut(s) | 296, 950, 1143, 1155, 1463, 1501, 1669 |
| Hpy166II | GTNNAC | 7 cut(s) | 287, 414, 643, 1023, 1792, 2216, 2300 |
| Hpy188III | TCNNGA | 8 cut(s) | 341, 510, 758, 948, 998, 1646, 1694, 1805 |
| Hpy8I | GTNNAC | 7 cut(s) | 287, 414, 643, 1023, 1792, 2216, 2300 |
| HpyCH4III | ACNGT | 5 cut(s) | 518, 1336, 1980, 2213, 2256 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 47, 392, 826, 1220, 1229, 1696, 1964, 2339, 2348 |
| HpyF3I | CTNAG | 5 cut(s) | 93, 312, 463, 1095, 2219 |
| Hsp92II | CATG | 3 cut(s) | 1790, 1921, 1929 |
| KspAI | GTTAAC | 2 cut(s) | 414, 643 |
| Kzo9I | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| LguI | GCTCTTC | 1 cut(s) | 2132 |
| LmnI | GCTCC | 6 cut(s) | 109, 405, 459, 631, 1365, 1906 |
| MaeI | CTAG | 7 cut(s) | 159, 258, 672, 948, 1110, 1233, 2172 |
| MalI | GATC | 5 cut(s) | 378, 594, 609, 1677, 1809 |
| MboI | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| MfeI | CAATTG | 1 cut(s) | 678 |
| MhlI | GDGCHC | 4 cut(s) | 410, 464, 1370, 1559 |
| MlsI | TGGCCA | 1 cut(s) | 1192 |
| MluNI | TGGCCA | 1 cut(s) | 1192 |
| MlyI | GAGTC | 8 cut(s) | 95, 104, 145, 596, 689, 763, 1693, 1928 |
| MmeI | TCCRAC | 2 cut(s) | 113, 1063 |
| Mox20I | TGGCCA | 1 cut(s) | 1192 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2227 |
| MscI | TGGCCA | 1 cut(s) | 1192 |
| Msp20I | TGGCCA | 1 cut(s) | 1192 |
| MspA1I | CMGCKG | 2 cut(s) | 1973, 2330 |
| MspI | CCGG | 4 cut(s) | 635, 710, 1296, 1559 |
| MspR9I | CCNGG | 5 cut(s) | 53, 711, 1296, 1559, 1560 |
| MunI | CAATTG | 1 cut(s) | 678 |
| MvaI | CCWGG | 1 cut(s) | 53 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 47, 392, 826, 1220, 1229, 1696, 1964, 2339, 2348 |
| NciI | CCSGG | 4 cut(s) | 711, 1296, 1559, 1560 |
| NdeII | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| NlaIII | CATG | 3 cut(s) | 1790, 1921, 1929 |
| NlaIV | GGNNCC | 2 cut(s) | 558, 1740 |
| NmuCI | GTSAC | 6 cut(s) | 101, 207, 526, 1438, 1489, 2307 |
| NspI | RCATGY | 1 cut(s) | 1790 |
| NspV | TTCGAA | 1 cut(s) | 360 |
| PciI | ACATGT | 1 cut(s) | 1786 |
| PciSI | GCTCTTC | 1 cut(s) | 2132 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2227 |
| PfeI | GAWTC | 7 cut(s) | 187, 1343, 1520, 1610, 1838, 1868, 2317 |
| PfoI | TCCNGGA | 1 cut(s) | 709 |
| PleI | GAGTC | 8 cut(s) | 94, 103, 144, 595, 689, 762, 1692, 1928 |
| PpsI | GAGTC | 8 cut(s) | 94, 103, 144, 595, 689, 762, 1692, 1928 |
| PpuMI | RGGWCCY | 1 cut(s) | 2336 |
| PscI | ACATGT | 1 cut(s) | 1786 |
| PshAI | GACNNNNGTC | 1 cut(s) | 519 |
| Psp124BI | GAGCTC | 3 cut(s) | 410, 464, 1370 |
| Psp5II | RGGWCCY | 1 cut(s) | 2336 |
| Psp6I | CCWGG | 1 cut(s) | 51 |
| PspEI | GGTNACC | 2 cut(s) | 1249, 1489 |
| PspGI | CCWGG | 1 cut(s) | 51 |
| PspN4I | GGNNCC | 2 cut(s) | 558, 1740 |
| PspPI | GGNCC | 3 cut(s) | 521, 1568, 2336 |
| PspPPI | RGGWCCY | 1 cut(s) | 2336 |
| PstI | CTGCAG | 2 cut(s) | 124, 2335 |
| PstNI | CAGNNNCTG | 3 cut(s) | 590, 2017, 2339 |
| PvuII | CAGCTG | 2 cut(s) | 1973, 2330 |
| RsaI | GTAC | 5 cut(s) | 433, 616, 1546, 2217, 2258 |
| RsaNI | GTAC | 5 cut(s) | 432, 615, 1545, 2216, 2257 |
| SacI | GAGCTC | 3 cut(s) | 410, 464, 1370 |
| SapI | GCTCTTC | 1 cut(s) | 2132 |
| Sau3AI | GATC | 5 cut(s) | 376, 592, 607, 1675, 1807 |
| Sau96I | GGNCC | 3 cut(s) | 521, 1568, 2336 |
| ScaI | AGTACT | 1 cut(s) | 616 |
| SchI | GAGTC | 8 cut(s) | 95, 104, 145, 596, 689, 763, 1693, 1928 |
| ScrFI | CCNGG | 5 cut(s) | 53, 711, 1296, 1559, 1560 |
| SduI | GDGCHC | 4 cut(s) | 410, 464, 1370, 1559 |
| SfcI | CTRYAG | 2 cut(s) | 120, 2331 |
| SfuI | TTCGAA | 1 cut(s) | 360 |
| SinI | GGWCC | 3 cut(s) | 521, 1568, 2336 |
| SmaI | CCCGGG | 1 cut(s) | 1560 |
| SmlI | CTYRAG | 3 cut(s) | 849, 1644, 1941 |
| SmoI | CTYRAG | 3 cut(s) | 849, 1644, 1941 |
| SsiI | CCGC | 6 cut(s) | 153, 181, 389, 638, 1996, 2352 |
| SspI | AATATT | 3 cut(s) | 1633, 2047, 2275 |
| SspMI | CTAG | 7 cut(s) | 159, 258, 672, 948, 1110, 1233, 2172 |
| SstI | GAGCTC | 3 cut(s) | 410, 464, 1370 |
| StyD4I | CCNGG | 5 cut(s) | 51, 709, 1294, 1557, 1558 |
| TaaI | ACNGT | 5 cut(s) | 518, 1336, 1980, 2213, 2256 |
| TaqI | TCGA | 4 cut(s) | 360, 1370, 1549, 2159 |
| TatI | WGTACW | 3 cut(s) | 431, 614, 2215 |
| TauI | GCSGC | 2 cut(s) | 155, 2354 |
| TfiI | GAWTC | 7 cut(s) | 187, 1343, 1520, 1610, 1838, 1868, 2317 |
| TscAI | CASTG | 7 cut(s) | 523, 531, 1030, 1407, 1510, 1521, 2218 |
| TseFI | GTSAC | 6 cut(s) | 101, 207, 526, 1438, 1489, 2307 |
| Tsp45I | GTSAC | 6 cut(s) | 101, 207, 526, 1438, 1489, 2307 |
| TspDTI | ATGAA | 7 cut(s) | 17, 593, 806, 939, 1017, 2225, 2265 |
| TspGWI | ACGGA | 1 cut(s) | 2166 |
| TspMI | CCCGGG | 1 cut(s) | 1558 |
| TspRI | CASTG | 7 cut(s) | 523, 531, 1030, 1407, 1510, 1521, 2218 |
| VpaK11BI | GGWCC | 3 cut(s) | 521, 1568, 2336 |
| XapI | RAATTY | 4 cut(s) | 4, 943, 993, 2126 |
| XbaI | TCTAGA | 1 cut(s) | 947 |
| XceI | RCATGY | 1 cut(s) | 1790 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1079 |
| XmaI | CCCGGG | 1 cut(s) | 1558 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2227 |
| XspI | CTAG | 7 cut(s) | 159, 258, 672, 948, 1110, 1233, 2172 |
| ZrmI | AGTACT | 1 cut(s) | 616 |