Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008882

Physical Location & Seq

Genomic Coordinates Forward (+)

17441229 .. 17442491

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATGTCCAGGAATACTCTGTTCAAGATTTTAGAACAGTATCAACAAGGCAAGAGTGGTGATCCTCAAAATGATGACAAGTTGGGTAATTTTGGAGAAATGAAACCAGAGTCTGATCTTTTACCCACAGATCAAAGTACTATTGAAGCTCCTCAACTGGCAGTTAACGAAGGAAGATTTGAGAAAAATTTATCTAGTCCAATTGATACTGAAGCAGACTCTACTAGAACTCTGGGAGAGAATAGTAATCGAAAATCAATAGCTTCAATGCAATGGAGTCAAGAAAGGGAAGCAGAATTGGACCAAATGCTGATGAAAATGATGGAAACTAAACCTGTTAAGCCTCTGAAGCCTGTTAACTCTACAAAGCCTCAAGCTACCAGAAATCAAAGCCTTCCTTCTGAACAGAGAGGTGGCTTTTATGACCACTACAAGGAGAAGAGAGATGAAAAACTACGAGGTGAGAATTCTAGAAAGCGAGCAGAGAAAGAAGCACAATTTAAAGCAATGCAGCGAATTCTTGATGAAAGGAAAGCCGAAATGTCCTCTACAAAGGCGAATGATATTGATAAAAAACGTGCTACGCAGAAGCCGCAAAAATCAGTTGGAAAAGTATCTCAACCTGCAAATCCTAGAGAGGAAAATGCAAAGCCTTCTGTTACAAAGAAGGCTTCTCCTAGAACATCATCCATGCCTCCTACACGCAAGTCGTGGCCATCAACACCAGCACCGAGAGCCACAGGGGCATCGCCAGCTAGAACTCCTGTTGGGGTTACCAGCACTACCCCGACCCGTCAAAAACCCAAGCCAACACCACCCAGCGCTAAAGTGGAAAGACCCCTACAGCAACAGAGGAATGTGAAGGAATCTGTCATTACTAATGACATGAGCTCGAAGGGAGTAAATGAGAAGCAGCAGCAAGCAGTGAAAAAGAGTGGTGAAACAACAAAACCAAAAGTAGCGACAACCTCTGATGATTATTCTGATATAATTCCAGCAAAGCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

37.53

Weight (kDa)

9.81

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008882)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g26360 FvH4_7g26360 FvH4_7g26360 FvH4_7g26360 FvH4_7g26360 FvH4_7g26360
malus_domestica	MD01G1172700.v1.1 MD07G1239000.v1.1
prunus_persica	Prupe.2G267800_v2.0.a1 Prupe.2G267800_v2.0.a1
pyrus_communis	pycom01g18430 pycom01g18450 pycom07g21500
rosa_chinensis	RchiOBHm_Chr1g0372921
rosa_laevigata	RLG00000026866
rosa_multiflora	Rmu_ssc0000425.1_g000017
rosa_roxburghii	Rroxscaffold_4G00284610
rosa_rugosa	Rorug01G0374900
rosa_samantha	Rh1AG383400 Rh1BG347300 Rh1CG360700 Rh1DG378200
rosa_wichuraiana	Rw1G033780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	713
AcsI	RAATTY	3 cut(s)	187, 466, 516
AcuI	CTGAAG	2 cut(s)	231, 368
AfaI	GTAC	1 cut(s)	139
AfeI	AGCGCT	1 cut(s)	823
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	25, 146, 267
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	5 cut(s)	149, 263, 377, 755, 891
AluI	AGCT	5 cut(s)	149, 263, 377, 755, 891
Alw21I	GWGCWC	1 cut(s)	893
AlwI	GGATC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	113
Aor51HI	AGCGCT	1 cut(s)	823
AoxI	GGCC	1 cut(s)	713
ApeKI	GCWGC	3 cut(s)	511, 913, 916
ApoI	RAATTY	3 cut(s)	187, 466, 516
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	3 cut(s)	71, 473, 950
AvaII	GGWCC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	893
Bbv12I	GWGCWC	1 cut(s)	893
BbvI	GCAGC	3 cut(s)	523, 925, 928
BccI	CCATC	2 cut(s)	316, 724
BciT130I	CCWGG	1 cut(s)	10
BfaI	CTAG	7 cut(s)	195, 225, 471, 633, 678, 756, 1009
BfmI	CTRYAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	743
BisI	GCNGC	4 cut(s)	512, 593, 914, 917
BlsI	GCNGC	4 cut(s)	513, 594, 915, 918
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	278, 513
BseBI	CCWGG	1 cut(s)	10
BseGI	GGATG	1 cut(s)	686
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	2 cut(s)	278, 513
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	523, 925, 928
BseYI	CCCAGC	1 cut(s)	818
BshFI	GGCC	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	893
BslI	CCNNNNNNNGG	1 cut(s)	433
BsnI	GGCC	1 cut(s)	715
Bsp1286I	GDGCHC	1 cut(s)	893
Bsp143I	GATC	3 cut(s)	61, 115, 130
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	1 cut(s)	715
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	278, 513
BsrI	ACTGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	61, 115, 130
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	480, 753, 921
BstEII	GGTNACC	1 cut(s)	772
BstF5I	GGATG	1 cut(s)	686
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	3 cut(s)	64, 118, 133
BstMBI	GATC	3 cut(s)	61, 115, 130
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 592, 734, 743, 752
BstNI	CCWGG	1 cut(s)	10
BstPI	GGTNACC	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	842
BstV1I	GCAGC	3 cut(s)	523, 925, 928
BsuRI	GGCC	1 cut(s)	715
BtgZI	GCGATG	1 cut(s)	732
BtsCI	GGATG	1 cut(s)	686
BtsI	GCAGTG	1 cut(s)	930
BtsIMutI	CAGTG	1 cut(s)	930
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	480, 753, 921
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	2 cut(s)	691, 886
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	3 cut(s)	63, 117, 132
DpnII	GATC	3 cut(s)	61, 115, 130
DraI	TTTAAA	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	713
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	891
Eco24I	GRGCYC	1 cut(s)	893
Eco47I	GGWCC	1 cut(s)	301
Eco47III	AGCGCT	1 cut(s)	823
Eco53kI	GAGCTC	1 cut(s)	891
Eco57I	CTGAAG	2 cut(s)	231, 368
Eco91I	GGTNACC	1 cut(s)	772
EcoICRI	GAGCTC	1 cut(s)	891
EcoO65I	GGTNACC	1 cut(s)	772
EcoRI	GAATTC	2 cut(s)	466, 516
EcoRII	CCWGG	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	893
FaeI	CATG	2 cut(s)	694, 889
FaiI	YATR	4 cut(s)	423, 692, 887, 989
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FatI	CATG	2 cut(s)	690, 885
Fnu4HI	GCNGC	4 cut(s)	512, 593, 914, 917
FokI	GGATG	1 cut(s)	673
FriOI	GRGCYC	1 cut(s)	893
Fsp4HI	GCNGC	4 cut(s)	512, 593, 914, 917
FspBI	CTAG	7 cut(s)	195, 225, 471, 633, 678, 756, 1009
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	4 cut(s)	512, 593, 914, 917
GsaI	CCCAGC	1 cut(s)	822
HaeII	RGCGCY	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	715
HhaI	GCGC	1 cut(s)	824
Hin1II	CATG	2 cut(s)	694, 889
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	2 cut(s)	166, 358
HindII	GTYRAC	2 cut(s)	166, 358
HinfI	GANTC	4 cut(s)	110, 218, 277, 866
HpaI	GTTAAC	2 cut(s)	166, 358
HphI	GGTGA	3 cut(s)	71, 473, 950
Hpy166II	GTNNAC	2 cut(s)	166, 358
Hpy188I	TCNGA	5 cut(s)	115, 348, 403, 973, 985
Hpy188III	TCNNGA	4 cut(s)	25, 281, 471, 521
Hpy8I	GTNNAC	2 cut(s)	166, 358
HpyAV	CCTTC	7 cut(s)	164, 404, 408, 661, 663, 856, 889
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	4 cut(s)	271, 511, 626, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 592, 734, 743, 752
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	2 cut(s)	694, 889
HspAI	GCGC	1 cut(s)	822
KspAI	GTTAAC	2 cut(s)	166, 358
Kzo9I	GATC	3 cut(s)	61, 115, 130
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	3 cut(s)	523, 925, 928
LweI	GCATC	1 cut(s)	755
MaeI	CTAG	7 cut(s)	195, 225, 471, 633, 678, 756, 1009
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	658, 772
MalI	GATC	3 cut(s)	63, 117, 132
MboI	GATC	3 cut(s)	61, 115, 130
MboII	GAAGA	2 cut(s)	186, 451
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	893
MlsI	TGGCCA	1 cut(s)	715
MluCI	AATT	8 cut(s)	88, 187, 201, 296, 466, 497, 516, 990
MluNI	TGGCCA	1 cut(s)	715
MlyI	GAGTC	3 cut(s)	119, 212, 286
MmeI	TCCRAC	1 cut(s)	586
Mox20I	TGGCCA	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	715
MseI	TTAA	4 cut(s)	165, 339, 357, 501
Msp20I	TGGCCA	1 cut(s)	715
MspR9I	CCNGG	1 cut(s)	10
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	5 cut(s)	349, 592, 734, 743, 752
NdeII	GATC	3 cut(s)	61, 115, 130
NlaIII	CATG	2 cut(s)	694, 889
PfeI	GAWTC	1 cut(s)	866
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	513, 594, 915, 918
PleI	GAGTC	3 cut(s)	118, 212, 285
PpsI	GAGTC	3 cut(s)	118, 212, 285
Psp124BI	GAGCTC	1 cut(s)	893
Psp6I	CCWGG	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	772
PspFI	CCCAGC	1 cut(s)	818
PspGI	CCWGG	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	893
SaqAI	TTAA	4 cut(s)	165, 339, 357, 501
SatI	GCNGC	4 cut(s)	512, 593, 914, 917
Sau3AI	GATC	3 cut(s)	61, 115, 130
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	3 cut(s)	119, 212, 286
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	893
SfaNI	GCATC	1 cut(s)	755
SfcI	CTRYAG	1 cut(s)	842
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	8 cut(s)	88, 187, 201, 296, 466, 497, 516, 990
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	7 cut(s)	195, 225, 471, 633, 678, 756, 1009
SstI	GAGCTC	1 cut(s)	893
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	2 cut(s)	250, 893
TasI	AATT	8 cut(s)	88, 187, 201, 296, 466, 497, 516, 990
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	1 cut(s)	866
Tru1I	TTAA	4 cut(s)	165, 339, 357, 501
Tru9I	TTAA	4 cut(s)	165, 339, 357, 501
TscAI	CASTG	1 cut(s)	930
TseI	GCWGC	3 cut(s)	511, 913, 916
TspDTI	ATGAA	4 cut(s)	116, 329, 462, 540
TspRI	CASTG	1 cut(s)	930
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	3 cut(s)	187, 466, 516
XbaI	TCTAGA	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XspI	CTAG	7 cut(s)	195, 225, 471, 633, 678, 756, 1009
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.