Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010720

Physical Location & Seq

Genomic Coordinates Forward (+)

134054 .. 135728

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGACACCACTCAGAAAACCATTTCCCCACCTCCTCTTCACCCCCAAATCCAAATCTTCATCCTTCCAATCACTCGCCTCCTACTTCACTCTCACTCCAAATCTTCATCCTTCCTCACCACACCCACCTGAATCACCCATTACCCACATACCAAATCCACCACAGCAGCCAAAACCCACCTTCAAGATCCCACCTTTCGTTCCTATTCCCCCGCCATTCACTCAAACCAGGCCCTTCTCAACCGCAAATTCCGACCCTTCTCAGCCAATCCCGGTTGTTTCCACAGTGACTTCGCCCCACGACAGTTCGCAGCCCATCGATGCAGGCTCTTCTATTCGAAAACCGATAAGTTTATGGCCTGGAATGTACAGTTCCCCTGTCACAAATGCTCTGTGGGAAGCAAGATCAAAGATGTGCGGGGACGCATCGGGTGACGCGCCTCCGCAGAGTGAATTGGTCGCCAGGACTCCGGCGCAGAGTCGGACCAGTATTCTGTACAAGTTTTCGTCTGATTATAAACTGAGAGAGCAGTACAGGAACCCCTGGAATGGGATTAGAATGGGGAAGTTGCTTGAGGATCTCGATGCTCTTGCTGGAACCATTGCATTCAAGCATTGCTGCAATGAAGATGGCACAACAAGGCCTCTGCTACTGGTGACTGCTTCTGTTGACAAGATGGTTTTGAAAAAACCTATCCTTGTCGACACTGATTTGAATATAGGTGGGGCTGTCATATGGGTTGGGAAGTCATCCATGGAAATTCAGCTGGAAGTGACTCAATCGTTGCAGGGATCCTCATACCCATCAGAGTCCACTGCTCTTACAGCAAACTTCACTTTTGTAGCCCGTGATTCTAAGTCTGGAAAATCAGCTCCGGTTAACCAGATATTGCCTGAGACTGAGAAAGAAAAATTGCTCTGGGAAGAAGCAGATAAGAGGAATAAAATGAGGAAAAAGAAAAGAGCAGAACATAAAACAGATACTGAAAACCAGGACACAGACAGACTCAATGCCTTGTTAGCCGAAGGTCGAGTTTTCTGTGACATGCCAGCACTGGCAGACCGAGATAGCATTCTTATAAGGGACACTTGCCTCCAGAACTCCTTTATTTGCCAGCCACAGCAAAGGAACATCCATGGTCGGATCGATCCCAGAGTACTCTGGAGGATTTTTGATGCGAAGAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

397

Amino Acids

44.05

Weight (kDa)

9.11

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30720
fragaria_vesca	FvH4_1g00450
malus_domestica	MD02G1003700.v1.1 MD15G1147000.v1.1
prunus_persica	Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1
pyrus_communis	pycom02g00210 pycom15g13180 pycom15g13190
rosa_chinensis	RchiOBHm_Chr2g0084961
rosa_laevigata	RLG00000015651
rosa_multiflora	Rmu_sc0008647.1_g000025
rosa_roxburghii	Rroxscaffold_2G00155690
rosa_rugosa	Rorug01G0457300
rosa_samantha	Rh2AG004900 Rh2BG006100 Rh2CG006700 Rh2DG006500
rosa_wichuraiana	Rw2G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	516, 1079
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	1 cut(s)	437
AciI	CCGC	4 cut(s)	212, 243, 417, 443
AclWI	GGATC	6 cut(s)	181, 585, 786, 799, 1142, 1151
AcsI	RAATTY	2 cut(s)	247, 759
AfaI	GTAC	4 cut(s)	368, 497, 533, 1158
AfiI	CCNNNNNNNGG	2 cut(s)	548, 549
AgsI	TTSAA	4 cut(s)	184, 610, 685, 715
AjnI	CCWGG	5 cut(s)	227, 358, 461, 542, 990
AluBI	AGCT	2 cut(s)	766, 872
AluI	AGCT	2 cut(s)	766, 872
Alw26I	GTCTC	1 cut(s)	890
AlwI	GGATC	6 cut(s)	181, 585, 786, 799, 1142, 1151
AlwNI	CAGNNNCTG	1 cut(s)	983
AoxI	GGCC	3 cut(s)	230, 356, 641
ApeKI	GCWGC	3 cut(s)	166, 310, 618
ApoI	RAATTY	2 cut(s)	247, 759
AspLEI	GCGC	2 cut(s)	439, 475
AspS9I	GGNCC	2 cut(s)	231, 483
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	5 cut(s)	31, 108, 126, 443, 667
AsuII	TTCGAA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	483
BamHI	GGATCC	1 cut(s)	791
BbvI	GCAGC	3 cut(s)	178, 322, 605
BccI	CCATC	4 cut(s)	323, 623, 670, 811
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	5 cut(s)	229, 360, 463, 544, 992
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	890
BisI	GCNGC	3 cut(s)	167, 311, 619
BlsI	GCNGC	3 cut(s)	168, 312, 620
BmcAI	AGTACT	1 cut(s)	1158
Bme1390I	CCNGG	6 cut(s)	229, 272, 360, 463, 544, 992
Bme18I	GGWCC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	231, 483
BmiI	GGNNCC	3 cut(s)	539, 598, 793
BmrFI	CCNGG	6 cut(s)	229, 272, 360, 463, 544, 992
BmsI	GCATC	4 cut(s)	310, 434, 574, 1165
BpmI	CTGGAG	2 cut(s)	1079, 1183
Bpu14I	TTCGAA	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	272
Bsa29I	ATCGAT	2 cut(s)	318, 1146
BsaJI	CCNNGG	3 cut(s)	542, 753, 1135
BsaWI	WCCGGW	1 cut(s)	874
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	548, 549
Bse1I	ACTGG	3 cut(s)	486, 657, 1059
Bse3DI	GCAATG	3 cut(s)	600, 613, 628
BseBI	CCWGG	5 cut(s)	229, 360, 463, 544, 992
BseCI	ATCGAT	2 cut(s)	318, 1146
BseDI	CCNNGG	3 cut(s)	542, 753, 1135
BseGI	GGATG	4 cut(s)	59, 106, 749, 1131
BseLI	CCNNNNNNNGG	2 cut(s)	548, 549
BseMI	GCAATG	3 cut(s)	600, 613, 628
BseMII	CTCAG	5 cut(s)	25, 275, 512, 885, 891
BseNI	ACTGG	3 cut(s)	486, 657, 1059
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	178, 322, 605
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	3 cut(s)	232, 358, 643
BshVI	ATCGAT	2 cut(s)	318, 1146
BsiSI	CCGG	3 cut(s)	272, 470, 875
BslFI	GGGAC	2 cut(s)	434, 1097
BslI	CCNNNNNNNGG	2 cut(s)	548, 549
BsmAI	GTCTC	1 cut(s)	890
BsmFI	GGGAC	2 cut(s)	434, 1097
BsmI	GAATGC	2 cut(s)	605, 1071
BsnI	GGCC	3 cut(s)	232, 358, 643
Bsp119I	TTCGAA	1 cut(s)	337
Bsp1407I	TGTACA	2 cut(s)	366, 495
Bsp143I	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
Bsp19I	CCATGG	2 cut(s)	753, 1135
BspACI	CCGC	4 cut(s)	212, 243, 417, 443
BspANI	GGCC	3 cut(s)	232, 358, 643
BspCNI	CTCAG	5 cut(s)	24, 274, 513, 886, 892
BspDI	ATCGAT	2 cut(s)	318, 1146
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	539, 598, 793
BspPI	GGATC	6 cut(s)	181, 585, 786, 799, 1142, 1151
BspQI	GCTCTTC	2 cut(s)	334, 1175
BspT104I	TTCGAA	1 cut(s)	337
BsrDI	GCAATG	3 cut(s)	600, 613, 628
BsrGI	TGTACA	2 cut(s)	366, 495
BsrI	ACTGG	3 cut(s)	486, 657, 1059
BssECI	CCNNGG	3 cut(s)	542, 753, 1135
BssMI	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
BssT1I	CCWWGG	2 cut(s)	753, 1135
Bst2UI	CCWGG	5 cut(s)	229, 360, 463, 544, 992
Bst4CI	ACNGT	3 cut(s)	286, 305, 371
Bst6I	CTCTTC	3 cut(s)	41, 334, 1175
BstAUI	TGTACA	2 cut(s)	366, 495
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	325, 1050, 1115
BstDEI	CTNAG	6 cut(s)	11, 261, 521, 855, 894, 900
BstDSI	CCRYGG	2 cut(s)	753, 1135
BstF5I	GGATG	4 cut(s)	59, 106, 749, 1131
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	2 cut(s)	439, 475
BstKTI	GATC	6 cut(s)	189, 407, 580, 794, 1146, 1150
BstMAI	GTCTC	1 cut(s)	890
BstMBI	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	824, 1019
BstNI	CCWGG	5 cut(s)	229, 360, 463, 544, 992
BstNSI	RCATGY	1 cut(s)	1048
BstSCI	CCNGG	6 cut(s)	227, 270, 358, 461, 542, 990
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	178, 322, 605
BstX2I	RGATCY	3 cut(s)	186, 577, 791
BstYI	RGATCY	3 cut(s)	186, 577, 791
Bsu15I	ATCGAT	2 cut(s)	318, 1146
BsuRI	GGCC	3 cut(s)	232, 358, 643
BsuTUI	ATCGAT	2 cut(s)	318, 1146
BtgI	CCRYGG	2 cut(s)	753, 1135
BtsCI	GGATG	4 cut(s)	59, 106, 749, 1131
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	4 cut(s)	291, 705, 813, 1052
Cac8I	GCNNGC	3 cut(s)	325, 1050, 1115
CaiI	CAGNNNCTG	1 cut(s)	983
CfoI	GCGC	2 cut(s)	439, 475
Cfr13I	GGNCC	2 cut(s)	231, 483
ClaI	ATCGAT	2 cut(s)	318, 1146
CseI	GACGC	2 cut(s)	431, 443
Csp6I	GTAC	4 cut(s)	367, 496, 532, 1157
CviAII	CATG	3 cut(s)	754, 1045, 1136
CviQI	GTAC	4 cut(s)	367, 496, 532, 1157
DdeI	CTNAG	6 cut(s)	11, 261, 521, 855, 894, 900
DpnI	GATC	6 cut(s)	188, 406, 579, 793, 1145, 1149
DpnII	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
Eam1104I	CTCTTC	3 cut(s)	41, 334, 1175
EarI	CTCTTC	3 cut(s)	41, 334, 1175
Eco130I	CCWWGG	2 cut(s)	753, 1135
Eco147I	AGGCCT	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	5 cut(s)	227, 358, 461, 542, 990
EcoT14I	CCWWGG	2 cut(s)	753, 1135
ErhI	CCWWGG	2 cut(s)	753, 1135
FaeI	CATG	3 cut(s)	757, 1048, 1139
FalI	AAGNNNNNCTT	2 cut(s)	1072, 1104
FaqI	GGGAC	2 cut(s)	434, 1097
FatI	CATG	3 cut(s)	753, 1044, 1135
FauI	CCCGC	2 cut(s)	219, 410
FauNDI	CATATG	1 cut(s)	734
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	167, 311, 619
FokI	GGATG	4 cut(s)	46, 93, 736, 1118
Fsp4HI	GCNGC	3 cut(s)	167, 311, 619
GlaI	GCGC	2 cut(s)	438, 474
GluI	GCNGC	3 cut(s)	167, 311, 619
GsuI	CTGGAG	2 cut(s)	1079, 1183
HaeIII	GGCC	3 cut(s)	232, 358, 643
HapII	CCGG	3 cut(s)	272, 470, 875
HgaI	GACGC	2 cut(s)	431, 443
HhaI	GCGC	2 cut(s)	439, 475
Hin1II	CATG	3 cut(s)	757, 1048, 1139
Hin6I	GCGC	2 cut(s)	437, 473
HinP1I	GCGC	2 cut(s)	437, 473
HincII	GTYRAC	3 cut(s)	670, 703, 880
HindII	GTYRAC	3 cut(s)	670, 703, 880
HinfI	GANTC	7 cut(s)	131, 466, 478, 775, 809, 851, 1005
HpaI	GTTAAC	1 cut(s)	880
HpaII	CCGG	3 cut(s)	272, 470, 875
HphI	GGTGA	5 cut(s)	31, 108, 126, 443, 667
Hpy166II	GTNNAC	4 cut(s)	670, 703, 813, 880
Hpy188I	TCNGA	6 cut(s)	14, 253, 483, 511, 808, 1143
Hpy188III	TCNNGA	5 cut(s)	184, 581, 861, 1096, 1162
Hpy8I	GTNNAC	4 cut(s)	670, 703, 813, 880
HpyAV	CCTTC	6 cut(s)	73, 120, 190, 244, 267, 1019
HpyCH4III	ACNGT	3 cut(s)	286, 305, 371
HpyCH4V	TGCA	4 cut(s)	323, 605, 621, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	824, 1019
HpyF3I	CTNAG	6 cut(s)	11, 261, 521, 855, 894, 900
Hsp92II	CATG	3 cut(s)	757, 1048, 1139
HspAI	GCGC	2 cut(s)	437, 473
KspAI	GTTAAC	1 cut(s)	880
Kzo9I	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
LguI	GCTCTTC	2 cut(s)	334, 1175
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	3 cut(s)	178, 322, 605
LweI	GCATC	4 cut(s)	310, 434, 574, 1165
MaeIII	GTNAC	6 cut(s)	286, 379, 431, 655, 772, 1040
MalI	GATC	6 cut(s)	188, 406, 579, 793, 1145, 1149
MboI	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
MboII	GAAGA	6 cut(s)	28, 48, 95, 321, 638, 935
MflI	RGATCY	3 cut(s)	186, 577, 791
MluCI	AATT	4 cut(s)	247, 452, 759, 911
MlyI	GAGTC	5 cut(s)	460, 487, 769, 818, 999
MmeI	TCCRAC	3 cut(s)	276, 461, 1121
MseI	TTAA	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	3 cut(s)	272, 470, 875
MspR9I	CCNGG	6 cut(s)	229, 272, 360, 463, 544, 992
Mva1269I	GAATGC	2 cut(s)	605, 1071
MvaI	CCWGG	5 cut(s)	229, 360, 463, 544, 992
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	824, 1019
NciI	CCSGG	1 cut(s)	272
NcoI	CCATGG	2 cut(s)	753, 1135
NdeI	CATATG	1 cut(s)	734
NdeII	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
NlaIII	CATG	3 cut(s)	757, 1048, 1139
NlaIV	GGNNCC	3 cut(s)	539, 598, 793
NmuCI	GTSAC	6 cut(s)	286, 379, 431, 655, 772, 1040
NspI	RCATGY	1 cut(s)	1048
NspV	TTCGAA	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	643
PciSI	GCTCTTC	2 cut(s)	334, 1175
PctI	GAATGC	2 cut(s)	605, 1071
PfeI	GAWTC	2 cut(s)	131, 851
PkrI	GCNGC	3 cut(s)	168, 312, 620
PleI	GAGTC	5 cut(s)	460, 486, 769, 817, 999
PpsI	GAGTC	5 cut(s)	460, 486, 769, 817, 999
PsiI	TTATAA	2 cut(s)	516, 1079
Psp6I	CCWGG	5 cut(s)	227, 358, 461, 542, 990
PspGI	CCWGG	5 cut(s)	227, 358, 461, 542, 990
PspN4I	GGNNCC	3 cut(s)	539, 598, 793
PspPI	GGNCC	2 cut(s)	231, 483
PstNI	CAGNNNCTG	1 cut(s)	983
PsuI	RGATCY	3 cut(s)	186, 577, 791
PvuII	CAGCTG	1 cut(s)	766
RsaI	GTAC	4 cut(s)	368, 497, 533, 1158
RsaNI	GTAC	4 cut(s)	367, 496, 532, 1157
SalI	GTCGAC	1 cut(s)	701
SapI	GCTCTTC	2 cut(s)	334, 1175
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	3 cut(s)	167, 311, 619
Sau3AI	GATC	6 cut(s)	186, 404, 577, 791, 1143, 1147
Sau96I	GGNCC	2 cut(s)	231, 483
ScaI	AGTACT	1 cut(s)	1158
SchI	GAGTC	5 cut(s)	460, 487, 769, 818, 999
ScrFI	CCNGG	6 cut(s)	229, 272, 360, 463, 544, 992
SetI	ASST	9 cut(s)	33, 130, 182, 196, 694, 724, 768, 874, 1030
SfaNI	GCATC	4 cut(s)	310, 434, 574, 1165
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	4 cut(s)	247, 452, 759, 911
SseBI	AGGCCT	1 cut(s)	643
SsiI	CCGC	4 cut(s)	212, 243, 417, 443
StuI	AGGCCT	1 cut(s)	643
StyD4I	CCNGG	6 cut(s)	227, 270, 358, 461, 542, 990
StyI	CCWWGG	2 cut(s)	753, 1135
TaaI	ACNGT	3 cut(s)	286, 305, 371
TaqI	TCGA	6 cut(s)	318, 337, 582, 702, 1030, 1146
TaqII	GACCGA	1 cut(s)	1077
TasI	AATT	4 cut(s)	247, 452, 759, 911
TatI	WGTACW	4 cut(s)	366, 495, 531, 1156
TfiI	GAWTC	2 cut(s)	131, 851
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	4 cut(s)	291, 712, 820, 1059
TseFI	GTSAC	6 cut(s)	286, 379, 431, 655, 772, 1040
TseI	GCWGC	3 cut(s)	166, 310, 618
Tsp45I	GTSAC	6 cut(s)	286, 379, 431, 655, 772, 1040
TspDTI	ATGAA	3 cut(s)	48, 95, 639
TspRI	CASTG	4 cut(s)	291, 712, 820, 1059
VpaK11BI	GGWCC	1 cut(s)	483
XapI	RAATTY	2 cut(s)	247, 759
XceI	RCATGY	1 cut(s)	1048
XmiI	GTMKAC	1 cut(s)	702
ZrmI	AGTACT	1 cut(s)	1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.