Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010720

Physical Location & Seq

Genomic Coordinates Forward (+)

464556 .. 468613

Gene Structure 4058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGATGATACCACTCCTCAGAAATCGCAATTCGAAATCTTGTTCATCCTTGCAAGCAATTGCTTCATACTTGACTCTCACTCTAAATGCAAACCCAACACAAACCCGCGCACTACCCAATTCACCAAAACCTCGATTTTCATACAGGCCATTCTCAACTGCAAAAAATTCAGACGACGAACCAATCCCAATCCCAGCCGTCGACAGTATCGATGCAGGCTCTTCAATCCGAAAACCCATCAGCTTATGGCCTGGAATGTACCACTCACCCGTCACAAATGCTCTTTGGGAAGCAAGGTCCAACATTTTTGATAGACCTACTACTCCCCAGAGTGAGTTGGTCACCAGGACTCCCGCGCAGAGCCGGACTAGTATTCTTTACAAGTTTTCCACTGATTTTATACTCAGAGAGCAATACAGGAATCCCTGGAATGGGGTTAGGATTGGCAAGTTGCTTGAGGATCTCGATGCTCTTGCTGGAACCATTGCATACAAGCACTGCTGCAATGAAGATGGCACAACAAGGCCTCTACTCTTGGTGACTGCTTCGGTTGACAAGATGGTTCTCAAGAAACCTATTCGTGATGACATAGATTTGAGTCTAGTTGGCGCTGTCGCATGGGTTGGTAGGTCATCCATGGAGATTCAACTCCAAGTCACGCAATCCACGGATGGAACTCCATCTTCATCAGAGTCCGTTGCTCTTATAGCAAACTTCACATTTGTGGCCCGTGATTCTAAGACTGGAAAATCAGCTCCTGTTAACCAAATCACACCTGAGACTGAACAAGAAAAGTTGCTATGGGAAGCAGCGGATAAAAGGAATGAAATGAGGAAAAAGAAGAGAGGAGAACATAAAATAGATATCGAGGATAAGGACAAAAACAGACTCAATGCCTTGTTAGCTGAAGGTCGAGTCTTCTGCGACATGCCAGCGCTGGCAGACCGAGATAGCATTCTTATCAGGGATACTTGCCTCCAGAACTCTTTTATATGCCAGCCACAGCAAAGGAATATCCATGGTCGAATCTTTGGAGGATTTTTAATGCGGAGAGCATTTGAACTGGCATTCTCAACAACTTATGCTTTTGCTGGTGCAGCACCACACTTTCTAGAAGTTGATCATGTTGATTTCGTTAGACCTGTAAGTTACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

385

Amino Acids

43.12

Weight (kDa)

8.93

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30720
fragaria_vesca	FvH4_1g00450
malus_domestica	MD02G1003700.v1.1 MD15G1147000.v1.1
prunus_persica	Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1 Prupe.7G267600_v2.0.a1
pyrus_communis	pycom02g00210 pycom15g13180 pycom15g13190
rosa_chinensis	RchiOBHm_Chr2g0084961
rosa_laevigata	RLG00000015651
rosa_multiflora	Rmu_sc0008647.1_g000025
rosa_roxburghii	Rroxscaffold_2G00155690
rosa_rugosa	Rorug01G0457300
rosa_samantha	Rh2AG004900 Rh2BG006100 Rh2CG006700 Rh2DG006500
rosa_wichuraiana	Rw2G000490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	2 cut(s)	108, 356
AciI	CCGC	4 cut(s)	106, 354, 812, 1048
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	936
AfiI	CCNNNNNNNGG	2 cut(s)	431, 432
AgsI	TTSAA	3 cut(s)	225, 647, 1061
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	3 cut(s)	250, 344, 425
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	3 cut(s)	243, 755, 905
AluI	AGCT	3 cut(s)	243, 755, 905
Alw26I	GTCTC	1 cut(s)	773
AlwI	GGATC	1 cut(s)	468
AlwNI	CAGNNNCTG	1 cut(s)	758
Aor51HI	AGCGCT	1 cut(s)	936
AoxI	GGCC	4 cut(s)	146, 248, 524, 726
ApeKI	GCWGC	3 cut(s)	501, 809, 1097
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	4 cut(s)	110, 358, 611, 937
AspS9I	GGNCC	2 cut(s)	297, 727
AsuHPI	GGTGA	4 cut(s)	114, 258, 334, 550
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	910
BbvI	GCAGC	3 cut(s)	488, 821, 1109
BccI	CCATC	5 cut(s)	245, 506, 553, 665, 688
BceAI	ACGGC	1 cut(s)	182
BcgI	CGANNNNNNTGC	4 cut(s)	455, 489, 903, 937
BciT130I	CCWGG	3 cut(s)	252, 346, 427
BciVI	GTATCC	1 cut(s)	961
BclI	TGATCA	1 cut(s)	1120
BcoDI	GTCTC	1 cut(s)	773
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	3 cut(s)	369, 602, 1112
BfoI	RGCGCY	2 cut(s)	612, 938
BfuI	GTATCC	1 cut(s)	961
BisI	GCNGC	3 cut(s)	502, 810, 1098
BlsI	GCNGC	3 cut(s)	503, 811, 1099
Bme1390I	CCNGG	3 cut(s)	252, 346, 427
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	297, 727
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	3 cut(s)	252, 346, 427
BmsI	GCATC	2 cut(s)	202, 457
BpiI	GAAGAC	1 cut(s)	910
BpmI	CTGGAG	1 cut(s)	962
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	476, 551
Bsa29I	ATCGAT	1 cut(s)	210
BsaJI	CCNNGG	4 cut(s)	425, 636, 666, 1018
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 432
Bse1I	ACTGG	2 cut(s)	748, 1068
Bse3DI	GCAATG	2 cut(s)	483, 511
BseBI	CCWGG	3 cut(s)	252, 346, 427
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	4 cut(s)	425, 636, 666, 1018
BseGI	GGATG	3 cut(s)	44, 632, 676
BseLI	CCNNNNNNNGG	2 cut(s)	431, 432
BseMI	GCAATG	2 cut(s)	483, 511
BseMII	CTCAG	3 cut(s)	31, 418, 768
BseNI	ACTGG	2 cut(s)	748, 1068
BseRI	GAGGAG	2 cut(s)	5, 861
BseXI	GCAGC	3 cut(s)	488, 821, 1109
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	1116
Bsh1236I	CGCG	2 cut(s)	108, 356
BshFI	GGCC	4 cut(s)	148, 250, 526, 728
BshVI	ATCGAT	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	431, 432
BsmAI	GTCTC	1 cut(s)	773
BsmI	GAATGC	2 cut(s)	954, 1067
BsnI	GGCC	4 cut(s)	148, 250, 526, 728
Bsp119I	TTCGAA	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	460, 1120
Bsp19I	CCATGG	2 cut(s)	636, 1018
BspACI	CCGC	4 cut(s)	106, 354, 812, 1048
BspANI	GGCC	4 cut(s)	148, 250, 526, 728
BspCNI	CTCAG	3 cut(s)	30, 417, 769
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	2 cut(s)	108, 356
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	226
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	483, 511
BsrI	ACTGG	2 cut(s)	748, 1068
BssECI	CCNNGG	4 cut(s)	425, 636, 666, 1018
BssMI	GATC	2 cut(s)	460, 1120
BssT1I	CCWWGG	2 cut(s)	636, 1018
Bst2UI	CCWGG	3 cut(s)	252, 346, 427
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	226, 836
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	5 cut(s)	54, 217, 933, 939, 998
BstDEI	CTNAG	4 cut(s)	17, 404, 738, 777
BstDSI	CCRYGG	3 cut(s)	636, 666, 1018
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	3 cut(s)	44, 632, 676
BstFNI	CGCG	2 cut(s)	108, 356
BstH2I	RGCGCY	2 cut(s)	612, 938
BstHHI	GCGC	4 cut(s)	110, 358, 611, 937
BstKTI	GATC	2 cut(s)	463, 1123
BstMAI	GTCTC	1 cut(s)	773
BstMBI	GATC	2 cut(s)	460, 1120
BstMWI	GCNNNNNNNGC	3 cut(s)	707, 902, 1097
BstNI	CCWGG	3 cut(s)	252, 346, 427
BstNSI	RCATGY	1 cut(s)	931
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	3 cut(s)	250, 344, 425
BstUI	CGCG	2 cut(s)	108, 356
BstV1I	GCAGC	3 cut(s)	488, 821, 1109
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu15I	ATCGAT	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	961
BsuRI	GGCC	4 cut(s)	148, 250, 526, 728
BsuTUI	ATCGAT	1 cut(s)	210
BtgI	CCRYGG	3 cut(s)	636, 666, 1018
BtsCI	GGATG	3 cut(s)	44, 632, 676
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	2 cut(s)	390, 496
Cac8I	GCNNGC	5 cut(s)	54, 217, 933, 939, 998
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	4 cut(s)	110, 358, 611, 937
Cfr13I	GGNCC	2 cut(s)	297, 727
ClaI	ATCGAT	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	5 cut(s)	618, 637, 928, 1019, 1124
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	4 cut(s)	17, 404, 738, 777
DpnI	GATC	2 cut(s)	462, 1122
DpnII	GATC	2 cut(s)	460, 1120
Eam1104I	CTCTTC	2 cut(s)	226, 836
EarI	CTCTTC	2 cut(s)	226, 836
Eco130I	CCWWGG	2 cut(s)	636, 1018
Eco147I	AGGCCT	1 cut(s)	526
Eco32I	GATATC	1 cut(s)	865
Eco47I	GGWCC	1 cut(s)	297
Eco47III	AGCGCT	1 cut(s)	936
Eco57I	CTGAAG	1 cut(s)	927
Eco91I	GGTNACC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	250, 344, 425
EcoRV	GATATC	1 cut(s)	865
EcoT14I	CCWWGG	2 cut(s)	636, 1018
ErhI	CCWWGG	2 cut(s)	636, 1018
FaeI	CATG	5 cut(s)	621, 640, 931, 1022, 1127
FatI	CATG	5 cut(s)	617, 636, 927, 1018, 1123
FauI	CCCGC	2 cut(s)	113, 361
FbaI	TGATCA	1 cut(s)	1120
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	502, 810, 1098
FokI	GGATG	3 cut(s)	31, 619, 683
Fsp4HI	GCNGC	3 cut(s)	502, 810, 1098
FspBI	CTAG	3 cut(s)	369, 602, 1112
GlaI	GCGC	4 cut(s)	109, 357, 610, 936
GluI	GCNGC	3 cut(s)	502, 810, 1098
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	962
HaeII	RGCGCY	2 cut(s)	612, 938
HaeIII	GGCC	4 cut(s)	148, 250, 526, 728
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	4 cut(s)	110, 358, 611, 937
Hin1II	CATG	5 cut(s)	621, 640, 931, 1022, 1127
Hin6I	GCGC	4 cut(s)	108, 356, 609, 935
HinP1I	GCGC	4 cut(s)	108, 356, 609, 935
HincII	GTYRAC	3 cut(s)	202, 553, 763
HindII	GTYRAC	3 cut(s)	202, 553, 763
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	4 cut(s)	114, 258, 334, 550
Hpy166II	GTNNAC	3 cut(s)	202, 553, 763
Hpy188I	TCNGA	5 cut(s)	20, 172, 230, 407, 691
Hpy188III	TCNNGA	5 cut(s)	464, 568, 581, 979, 1112
Hpy8I	GTNNAC	3 cut(s)	202, 553, 763
Hpy99I	CGWCG	2 cut(s)	179, 203
HpyAV	CCTTC	1 cut(s)	902
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	7 cut(s)	52, 89, 161, 215, 488, 504, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	707, 902, 1097
HpyF3I	CTNAG	4 cut(s)	17, 404, 738, 777
Hsp92II	CATG	5 cut(s)	621, 640, 931, 1022, 1127
HspAI	GCGC	4 cut(s)	108, 356, 609, 935
Ksp22I	TGATCA	1 cut(s)	1120
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	460, 1120
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	3 cut(s)	488, 821, 1109
LweI	GCATC	2 cut(s)	202, 457
MaeI	CTAG	3 cut(s)	369, 602, 1112
MaeIII	GTNAC	5 cut(s)	271, 340, 538, 655, 1148
MalI	GATC	2 cut(s)	462, 1122
MboI	GATC	2 cut(s)	460, 1120
MboII	GAAGA	5 cut(s)	213, 521, 675, 853, 910
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	1 cut(s)	460
MluCI	AATT	4 cut(s)	28, 57, 118, 166
MlyI	GAGTC	6 cut(s)	67, 343, 607, 701, 882, 924
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	26, 141, 451, 537, 825, 839, 862, 986, 1028
MseI	TTAA	2 cut(s)	762, 1043
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	3 cut(s)	252, 346, 427
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	2 cut(s)	954, 1067
MvaI	CCWGG	3 cut(s)	252, 346, 427
MvnI	CGCG	2 cut(s)	108, 356
MwoI	GCNNNNNNNGC	3 cut(s)	707, 902, 1097
NcoI	CCATGG	2 cut(s)	636, 1018
NdeII	GATC	2 cut(s)	460, 1120
NlaIII	CATG	5 cut(s)	621, 640, 931, 1022, 1127
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	4 cut(s)	271, 340, 538, 655
NspI	RCATGY	1 cut(s)	931
NspV	TTCGAA	1 cut(s)	32
OliI	CACNNNNGTG	1 cut(s)	722
PceI	AGGCCT	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	2 cut(s)	954, 1067
PfeI	GAWTC	4 cut(s)	421, 643, 734, 1026
PkrI	GCNGC	3 cut(s)	503, 811, 1099
PleI	GAGTC	6 cut(s)	67, 343, 606, 700, 882, 923
PpsI	GAGTC	6 cut(s)	67, 343, 606, 700, 882, 923
Psp6I	CCWGG	3 cut(s)	250, 344, 425
PspEI	GGTNACC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	250, 344, 425
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	297, 727
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	722
SalI	GTCGAC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	762, 1043
SatI	GCNGC	3 cut(s)	502, 810, 1098
Sau3AI	GATC	2 cut(s)	460, 1120
Sau96I	GGNCC	2 cut(s)	297, 727
SchI	GAGTC	6 cut(s)	67, 343, 607, 701, 882, 924
ScrFI	CCNGG	3 cut(s)	252, 346, 427
SfaNI	GCATC	2 cut(s)	202, 457
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	455, 566
SmoI	CTYRAG	2 cut(s)	455, 566
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	4 cut(s)	28, 57, 118, 166
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	4 cut(s)	106, 354, 812, 1048
SspMI	CTAG	3 cut(s)	369, 602, 1112
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	3 cut(s)	250, 344, 425
StyI	CCWWGG	2 cut(s)	636, 1018
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	8 cut(s)	32, 133, 201, 210, 465, 867, 913, 1024
TaqII	GACCGA	1 cut(s)	960
TasI	AATT	4 cut(s)	28, 57, 118, 166
TfiI	GAWTC	4 cut(s)	421, 643, 734, 1026
Tru1I	TTAA	2 cut(s)	762, 1043
Tru9I	TTAA	2 cut(s)	762, 1043
TscAI	CASTG	2 cut(s)	397, 503
TseFI	GTSAC	4 cut(s)	271, 340, 538, 655
TseI	GCWGC	3 cut(s)	501, 809, 1097
Tsp45I	GTSAC	4 cut(s)	271, 340, 538, 655
TspDTI	ATGAA	6 cut(s)	33, 54, 129, 522, 675, 840
TspGWI	ACGGA	2 cut(s)	683, 685
TspRI	CASTG	2 cut(s)	397, 503
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	1111
XceI	RCATGY	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	3 cut(s)	369, 602, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.