Rroxscaffold_2G00155690

Acyl-coenzyme A thioesterase 9, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
92074395 .. 92077911
3517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155690.1

Sequence Viewer

Length: 1362 bp
ATGATGATACCACTCCTCAGAAATCGCAATTTCAAATCTTGTTCATCCTTGCAAGCAATTGCTTCATACTTGACTCTCACTCAAAATGCAAACCCAACACAAACCCGCATACTACCCAATTCACCAAAACCTCTATTTTCATACAGGCCATTCTCAACTGCAAAAAATTCAGACGGCGAACCAATCCCGATCCCAGCCGTCGACAGTATCGATGCAGGCTCTTCAATCCGAAAACCCATCAGCTTATGGCCTGGAATGTACCACTCACCCGTCACAAATGCTCTTTGGGAAGCAAGGTCCAACATTATTGATAAACCGGGGCCGGGGGACACTACTACTCCCCAGACCCAGAGCGAGAATCCCTGGAATGGGGTTAGGATTGGCAAGTTGCTTGAGGATCTCGATGCTCTTGCTGGAACCATTGCATACAAGCACTGCTGCAATGAAGATGGCACAACAAGGCCTCTACTCTTGGTGACTGCTTCGGTTGACAAGATGGTTCTCAAGAAACCTATTCGTGATGACATAGATTTGAGTTTGGCTGGCGCTGTCGCATGGGTTGGCAGGTCATCCATGGAGATTCAACTCCAAGTCACGCAATCCACGGATGGAACTCCATCTTCATCAGAGTCCGTTGCTCTTATAGCAAACTTCACATTTGTGGCTCGTGATTCTAAGACTGGAAAATCAGCTCCTGTTAACCAAATCACACCTGAGACTGAAAAAGAAAAGTTGCTATGGGAAGCAGCGGATAAAAGGAATGAAATCAGGAAAAAGAAGAGAGGAGAACATAAAATAGATATCGAGGATAAGGACAAAAGCAGACTCCATGCCTTGTTAGCTGAAGGTCGAGTCTTTTGTGACATGCCAGCACTGGCAGACCGAGATAGCATTCTTATCAGAGATACTTGCCTCCAGAACTCTTTTATATGCCAGCCACAGCAAAGGAATATCCATGGTCGAATATTTGGAGGATTTTTAATGCGAAGAGCATTTGAACTGGCATTCTCAACAACTTATGCTTTTGCTGGTGCAGCACCACACTTTCTAGAAGTTGATCATGTTGATTTCGTTAGACCTGTGGATGTAGGTAATTTCCTCCGTTTGAAGTCTTGTGTTCTATATACAGAACTTGAGAACCCTTCTGAACCTCTGATAAATGTGGAAGTTGTTGCGCATGTTACACAGCCTGAGCTCAGGTCCAGTGAGGTGTCTAACAAATTCTACTTCACATTTTCTGTCCATCCTGAGGCCGTGAAAGATGGTGTCCGGATTCGCAATGTTGTTCCCGCTACAGAAGAGGAAGCACTGCGTGTGATTGAACGTATGGATGCAGAGAACTCCCATATTGCTGCATCATGA

Protein Analysis

453

Amino Acids

50.27

Weight (kDa)

6.4

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010720)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1176
Acc36I ACCTGC 1 cut(s) 555
AccI GTMKAC 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 1269
AciI CCGC 3 cut(s) 106, 749, 1290
AclWI GGATC 2 cut(s) 184, 405
AcsI RAATTY 2 cut(s) 166, 1220
AcuI CTGAAG 1 cut(s) 864
AdeI CACNNNGTG 1 cut(s) 1313
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 4 cut(s) 323, 368, 369, 1249
AgsI TTSAA 6 cut(s) 34, 225, 584, 998, 1108, 1322
AjnI CCWGG 2 cut(s) 250, 362
AleI CACNNNNGTG 1 cut(s) 659
AluBI AGCT 4 cut(s) 243, 692, 842, 1195
AluI AGCT 4 cut(s) 243, 692, 842, 1195
Alw21I GWGCWC 1 cut(s) 1197
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 2 cut(s) 184, 405
AlwNI CAGNNNCTG 1 cut(s) 695
Aor13HI TCCGGA 1 cut(s) 1269
AoxI GGCC 5 cut(s) 146, 248, 320, 461, 1251
ApeKI GCWGC 4 cut(s) 438, 746, 1034, 1352
ApoI RAATTY 2 cut(s) 166, 1220
AspLEI GCGC 2 cut(s) 548, 1177
AspS9I GGNCC 3 cut(s) 297, 320, 1200
AsuC2I CCSGG 2 cut(s) 318, 324
AsuHPI GGTGA 3 cut(s) 114, 258, 487
AvaII GGWCC 2 cut(s) 297, 1200
AxyI CCTNAGG 1 cut(s) 1248
BanII GRGCYC 1 cut(s) 1197
BauI CACGAG 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 1197
BbvI GCAGC 4 cut(s) 425, 758, 1046, 1339
BccI CCATC 7 cut(s) 245, 443, 490, 602, 625, 1251, 1256
BceAI ACGGC 3 cut(s) 182, 190, 1238
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 252, 364
BclI TGATCA 1 cut(s) 1057
BcnI CCSGG 2 cut(s) 318, 324
BcoDI GTCTC 1 cut(s) 710
BfaI CTAG 1 cut(s) 1049
BfmI CTRYAG 1 cut(s) 1293
BfoI RGCGCY 1 cut(s) 549
BfuAI ACCTGC 1 cut(s) 555
BisI GCNGC 4 cut(s) 439, 747, 1035, 1353
BlsI GCNGC 4 cut(s) 440, 748, 1036, 1354
Bme1390I CCNGG 4 cut(s) 252, 318, 324, 364
Bme18I GGWCC 2 cut(s) 297, 1200
BmgT120I GGNCC 3 cut(s) 297, 320, 1200
BmiI GGNNCC 2 cut(s) 321, 418
BmrFI CCNGG 4 cut(s) 252, 318, 324, 364
BmsI GCATC 3 cut(s) 202, 394, 1321
BpmI CTGGAG 1 cut(s) 899
Bpu10I CCTNAGC 2 cut(s) 1191, 1196
BpuEI CTTGAG 3 cut(s) 413, 488, 1154
BpuMI CCSGG 2 cut(s) 318, 324
Bsa29I ATCGAT 1 cut(s) 210
BsaJI CCNNGG 6 cut(s) 317, 323, 362, 573, 603, 955
BsaWI WCCGGW 1 cut(s) 1269
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 368, 369, 1249
Bse1I ACTGG 4 cut(s) 685, 879, 1005, 1203
Bse21I CCTNAGG 1 cut(s) 1248
Bse3DI GCAATG 3 cut(s) 420, 448, 1285
BseAI TCCGGA 1 cut(s) 1269
BseBI CCWGG 2 cut(s) 252, 364
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 6 cut(s) 317, 323, 362, 573, 603, 955
BseGI GGATG 6 cut(s) 44, 569, 613, 1090, 1243, 1336
BseLI CCNNNNNNNGG 4 cut(s) 323, 368, 369, 1249
BseMI GCAATG 3 cut(s) 420, 448, 1285
BseMII CTCAG 5 cut(s) 31, 705, 1182, 1210, 1239
BseNI ACTGG 4 cut(s) 685, 879, 1005, 1203
BseRI GAGGAG 2 cut(s) 5, 798
BseXI GCAGC 4 cut(s) 425, 758, 1046, 1339
BseYI CCCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 1053
BshFI GGCC 5 cut(s) 148, 250, 322, 463, 1253
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 1197
BsiSI CCGG 3 cut(s) 317, 323, 1270
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 4 cut(s) 323, 368, 369, 1249
BsmAI GTCTC 1 cut(s) 710
BsmFI GGGAC 1 cut(s) 341
BsmI GAATGC 2 cut(s) 891, 1004
BsnI GGCC 5 cut(s) 148, 250, 322, 463, 1253
Bsp1286I GDGCHC 1 cut(s) 1197
Bsp13I TCCGGA 1 cut(s) 1269
Bsp143I GATC 3 cut(s) 189, 397, 1057
Bsp19I CCATGG 2 cut(s) 573, 955
BspACI CCGC 3 cut(s) 106, 749, 1290
BspANI GGCC 5 cut(s) 148, 250, 322, 463, 1253
BspCNI CTCAG 5 cut(s) 30, 706, 1183, 1209, 1240
BspDI ATCGAT 1 cut(s) 210
BspEI TCCGGA 1 cut(s) 1269
BspHI TCATGA 1 cut(s) 1358
BspLI GGNNCC 2 cut(s) 321, 418
BspMI ACCTGC 1 cut(s) 555
BspPI GGATC 2 cut(s) 184, 405
BspQI GCTCTTC 2 cut(s) 226, 982
BsrDI GCAATG 3 cut(s) 420, 448, 1285
BsrI ACTGG 4 cut(s) 685, 879, 1005, 1203
BssECI CCNNGG 6 cut(s) 317, 323, 362, 573, 603, 955
BssMI GATC 3 cut(s) 189, 397, 1057
BssSI CACGAG 1 cut(s) 666
BssT1I CCWWGG 2 cut(s) 573, 955
Bst2BI CACGAG 1 cut(s) 666
Bst2UI CCWGG 2 cut(s) 252, 364
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 4 cut(s) 226, 773, 982, 1293
BstC8I GCNNGC 5 cut(s) 54, 217, 544, 870, 935
BstDEI CTNAG 6 cut(s) 17, 675, 714, 1191, 1196, 1248
BstDSI CCRYGG 3 cut(s) 573, 603, 955
BstF5I GGATG 6 cut(s) 44, 569, 613, 1090, 1243, 1336
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 2 cut(s) 548, 1177
BstKTI GATC 3 cut(s) 192, 400, 1060
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 3 cut(s) 189, 397, 1057
BstMWI GCNNNNNNNGC 3 cut(s) 644, 839, 1034
BstNI CCWGG 2 cut(s) 252, 364
BstNSI RCATGY 2 cut(s) 868, 1181
BstSCI CCNGG 4 cut(s) 250, 316, 322, 362
BstSFI CTRYAG 1 cut(s) 1293
BstV1I GCAGC 4 cut(s) 425, 758, 1046, 1339
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 1248
BsuRI GGCC 5 cut(s) 148, 250, 322, 463, 1253
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 3 cut(s) 573, 603, 955
BtsCI GGATG 6 cut(s) 44, 569, 613, 1090, 1243, 1336
BtsI GCAGTG 2 cut(s) 433, 1307
BtsIMutI CAGTG 4 cut(s) 433, 872, 1210, 1307
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 5 cut(s) 54, 217, 544, 870, 935
CaiI CAGNNNCTG 1 cut(s) 695
CciI TCATGA 1 cut(s) 1358
CfoI GCGC 2 cut(s) 548, 1177
Cfr13I GGNCC 3 cut(s) 297, 320, 1200
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 1 cut(s) 259
CviAII CATG 8 cut(s) 555, 574, 830, 865, 956, 1061, 1178, 1359
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 6 cut(s) 17, 675, 714, 1191, 1196, 1248
DpnI GATC 3 cut(s) 191, 399, 1059
DpnII GATC 3 cut(s) 189, 397, 1057
DraIII CACNNNGTG 1 cut(s) 1313
Eam1104I CTCTTC 4 cut(s) 226, 773, 982, 1293
EarI CTCTTC 4 cut(s) 226, 773, 982, 1293
Ecl136II GAGCTC 1 cut(s) 1195
Eco130I CCWWGG 2 cut(s) 573, 955
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 1197
Eco32I GATATC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 297, 1200
Eco53kI GAGCTC 1 cut(s) 1195
Eco57I CTGAAG 1 cut(s) 864
Eco81I CCTNAGG 1 cut(s) 1248
EcoICRI GAGCTC 1 cut(s) 1195
EcoRII CCWGG 2 cut(s) 250, 362
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 2 cut(s) 573, 955
EcoT38I GRGCYC 1 cut(s) 1197
ErhI CCWWGG 2 cut(s) 573, 955
FaeI CATG 8 cut(s) 558, 577, 833, 868, 959, 1064, 1181, 1362
FaqI GGGAC 1 cut(s) 341
FatI CATG 8 cut(s) 554, 573, 829, 864, 955, 1060, 1177, 1358
FauI CCCGC 2 cut(s) 113, 1297
FbaI TGATCA 1 cut(s) 1057
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 439, 747, 1035, 1353
FokI GGATG 6 cut(s) 31, 556, 620, 1097, 1230, 1343
FriOI GRGCYC 1 cut(s) 1197
Fsp4HI GCNGC 4 cut(s) 439, 747, 1035, 1353
FspBI CTAG 1 cut(s) 1049
FspI TGCGCA 1 cut(s) 1176
GlaI GCGC 2 cut(s) 547, 1176
GluI GCNGC 4 cut(s) 439, 747, 1035, 1353
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 899
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 5 cut(s) 148, 250, 322, 463, 1253
HapII CCGG 3 cut(s) 317, 323, 1270
HhaI GCGC 2 cut(s) 548, 1177
Hin1II CATG 8 cut(s) 558, 577, 833, 868, 959, 1064, 1181, 1362
Hin6I GCGC 2 cut(s) 546, 1175
HinP1I GCGC 2 cut(s) 546, 1175
HincII GTYRAC 3 cut(s) 202, 490, 700
HindII GTYRAC 3 cut(s) 202, 490, 700
HinfI GANTC 8 cut(s) 73, 358, 580, 629, 671, 825, 852, 1273
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 3 cut(s) 317, 323, 1270
HphI GGTGA 3 cut(s) 114, 258, 487
Hpy166II GTNNAC 3 cut(s) 202, 490, 700
Hpy188I TCNGA 7 cut(s) 20, 172, 230, 628, 902, 1147, 1155
Hpy8I GTNNAC 3 cut(s) 202, 490, 700
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 839, 1152
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 1324
HpyCH4V TGCA 9 cut(s) 52, 89, 161, 215, 425, 441, 1034, 1334, 1355
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 839, 1034
HpyF3I CTNAG 6 cut(s) 17, 675, 714, 1191, 1196, 1248
HpySE526I ACGT 1 cut(s) 1324
Hsp92II CATG 8 cut(s) 558, 577, 833, 868, 959, 1064, 1181, 1362
HspAI GCGC 2 cut(s) 546, 1175
Kpn2I TCCGGA 1 cut(s) 1269
Ksp22I TGATCA 1 cut(s) 1057
KspAI GTTAAC 1 cut(s) 700
Kzo9I GATC 3 cut(s) 189, 397, 1057
LguI GCTCTTC 2 cut(s) 226, 982
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 4 cut(s) 425, 758, 1046, 1339
LweI GCATC 3 cut(s) 202, 394, 1321
MaeI CTAG 1 cut(s) 1049
MaeII ACGT 1 cut(s) 1324
MaeIII GTNAC 5 cut(s) 271, 475, 592, 860, 1180
MalI GATC 3 cut(s) 191, 399, 1059
MboI GATC 3 cut(s) 189, 397, 1057
MboII GAAGA 6 cut(s) 213, 458, 612, 790, 999, 1310
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 1197
MluCI AATT 6 cut(s) 28, 57, 118, 166, 1093, 1220
MlyI GAGTC 4 cut(s) 67, 638, 819, 861
MmeI TCCRAC 1 cut(s) 324
MroI TCCGGA 1 cut(s) 1269
MseI TTAA 2 cut(s) 699, 980
MslI CAYNNNNRTG 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 749
MspI CCGG 3 cut(s) 317, 323, 1270
MspR9I CCNGG 4 cut(s) 252, 318, 324, 364
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 2 cut(s) 891, 1004
MvaI CCWGG 2 cut(s) 252, 364
MwoI GCNNNNNNNGC 3 cut(s) 644, 839, 1034
NciI CCSGG 2 cut(s) 318, 324
NcoI CCATGG 2 cut(s) 573, 955
NdeII GATC 3 cut(s) 189, 397, 1057
NlaIII CATG 8 cut(s) 558, 577, 833, 868, 959, 1064, 1181, 1362
NlaIV GGNNCC 2 cut(s) 321, 418
NmuCI GTSAC 4 cut(s) 271, 475, 592, 860
NsbI TGCGCA 1 cut(s) 1176
NspI RCATGY 2 cut(s) 868, 1181
OliI CACNNNNGTG 1 cut(s) 659
PagI TCATGA 1 cut(s) 1358
PceI AGGCCT 1 cut(s) 463
PciSI GCTCTTC 2 cut(s) 226, 982
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 2 cut(s) 891, 1004
PfeI GAWTC 4 cut(s) 358, 580, 671, 1273
PkrI GCNGC 4 cut(s) 440, 748, 1036, 1354
PleI GAGTC 4 cut(s) 67, 637, 819, 860
PpsI GAGTC 4 cut(s) 67, 637, 819, 860
Psp124BI GAGCTC 1 cut(s) 1197
Psp6I CCWGG 2 cut(s) 250, 362
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 250, 362
PspN4I GGNNCC 2 cut(s) 321, 418
PspPI GGNCC 3 cut(s) 297, 320, 1200
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 659
SacI GAGCTC 1 cut(s) 1197
SalI GTCGAC 1 cut(s) 200
SapI GCTCTTC 2 cut(s) 226, 982
SaqAI TTAA 2 cut(s) 699, 980
SatI GCNGC 4 cut(s) 439, 747, 1035, 1353
Sau3AI GATC 3 cut(s) 189, 397, 1057
Sau96I GGNCC 3 cut(s) 297, 320, 1200
SchI GAGTC 4 cut(s) 67, 638, 819, 861
ScrFI CCNGG 4 cut(s) 252, 318, 324, 364
SduI GDGCHC 1 cut(s) 1197
SfaNI GCATC 3 cut(s) 202, 394, 1321
SfcI CTRYAG 1 cut(s) 1293
SinI GGWCC 2 cut(s) 297, 1200
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 3 cut(s) 392, 503, 1133
SmoI CTYRAG 3 cut(s) 392, 503, 1133
Sse9I AATT 6 cut(s) 28, 57, 118, 166, 1093, 1220
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 3 cut(s) 106, 749, 1290
SspI AATATT 1 cut(s) 966
SspMI CTAG 1 cut(s) 1049
SstI GAGCTC 1 cut(s) 1197
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 4 cut(s) 250, 316, 322, 362
StyI CCWWGG 2 cut(s) 573, 955
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 1327
TaqI TCGA 6 cut(s) 201, 210, 402, 804, 850, 961
TaqII GACCGA 1 cut(s) 897
TasI AATT 6 cut(s) 28, 57, 118, 166, 1093, 1220
TfiI GAWTC 4 cut(s) 358, 580, 671, 1273
Tru1I TTAA 2 cut(s) 699, 980
Tru9I TTAA 2 cut(s) 699, 980
TscAI CASTG 4 cut(s) 440, 879, 1210, 1314
TseFI GTSAC 4 cut(s) 271, 475, 592, 860
TseI GCWGC 4 cut(s) 438, 746, 1034, 1352
Tsp45I GTSAC 4 cut(s) 271, 475, 592, 860
TspDTI ATGAA 6 cut(s) 33, 54, 129, 459, 612, 777
TspGWI ACGGA 3 cut(s) 620, 622, 1091
TspRI CASTG 4 cut(s) 440, 879, 1210, 1314
VpaK11BI GGWCC 2 cut(s) 297, 1200
XapI RAATTY 2 cut(s) 166, 1220
XbaI TCTAGA 1 cut(s) 1048
XceI RCATGY 2 cut(s) 868, 1181
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.