Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0015212

Physical Location & Seq

Genomic Coordinates Forward (+)

266766 .. 269919

Gene Structure 3154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGTTTTTTAAAATTAATTTAAGACATTCTAAAGATTCTCTTTCGGGAGCTAATAAATGGTTGGATCACATCGAAAGATCTTTTCAATTTTTCACAAAAACTATGAGTTATAACCCACGTTTTCATATCGATTTTGAAAATTTTTACAACACACATATAAGTCAAAATTCAATCCATTTTCGTCTTTCAACACGTAACAAAATATTAGGTTTTTTCCAATTTACCCTAATTGATTTTGTTTATCAAGAGAGAAAGAGGAATTCCCGCCAAAATAAAAAAACATCATCAAACGCTCCGAAGAGACACAAAACAAAACACAAACACATGATTAGCAGGAACATAAGCAGCTGCCGCGCGCCACAACTTGATAGGAACTTCTTCCTCGGACTCCTCAACAAGGCGACCTGTCTCTCTCACCTGACCCAGACTCACGCGCAGATCATCCTCAATGGCTACCAAAACGACCTCGCCACCGTCACCAAGCTCACCCACAAGTTCTCCGACCTCAAGGCCATGCGCCACGCACGTGACCTCTTCCTCTCCATCCCAAGACCCGACCTTTTCCTCTTCAACGTCGTCATCCGAGGCTTCGCCGCTAACGCCGCACCTTTGTCTGCGATTTCTCTCTACACCCATTTGCGGAAGAACACTAATCTTAAACCCGACAAGTTCACTTACGCCTTCGCCGTGTCGGCCGCTTCGGGTTTTAAGGACGAGAAATATGGGATTTTGCTGCACGCGCACTCGATTGTTGATGGGTTAGGATTGAATTTGTATGTTGGGTCGATTGTTGTTGACTTTTACTTCAAGCTTTCCCGGGTTGAGTTAGCACAGAAGGTGTTTGATGGATTGCCCGAGAAGGACACGGTTTTGTGGAATACGATGATATCTGGGTTGGTGAGGAATTGTTATTACGCTGATTCGATACGGGTTTTTGGAGATATGGTTGTGGGTGGGATGGGTTTTGATTCGACGACGTTAGCGGCCGTGCTTCCTGCAGTGGCAGAGTTGCAGGAGTTGAAAGCAGGGATGGGAGTTCATTGTTTGGCTCTGAAGGCTGGATATCATTCAGATGTTCATGTGCTTACCGGATTGGTTTCATTGTATTCGAAATGTAAGGAGCTAGAGACGGCAAGGTTGTTATTTGGGCACATTAGTCGACCCGATTTGATATGTTATAATGCAATGATTGCCGGATACACTTGCAACAATGAAACTGAATCATCGGTTAGTCATTTCAAGGATTTGCTTGCTTCTGGGGAGAAAGTCAATTCGAGTACAATTGTTGGGTTGATTCCTGTGTCTTCTCCTTTCGGTCATCTGCATCTCACTGGTTCTCTTCAAACTTTCTGTGTGAAATCTGGTATTGTTTCTCATCCTTCAGTTTCGACTGCATTTGTTACTGTTTATTGTAGACTGAATGAGATTGAATCGGCAAGACAGCTTTTTGATCAGTCTAAGGAGAAAACCTTGGCATCTTGGAATACTGCAATATCTCTTTTCCGTGAAATGATGTCTGAATTCAGTCCAAACCCTGTTACAGTTACAAGTATTCTTTCGGCCTGTGCTCAGCTCGGAGCAATAAGTCTTGGGAAATGGGTCCATGGTTTGATTAAGAGCAAAAATCTTGAGTCTAACATCTATGTATTGACTTCTCTAGTTGACATGTATGCAAAGTGTGGGAGCATTGTGGAAGCTCGGAAGTTATTCAACTCGATGACAGAGAAAAATGTGGTCACTTGGAATGCCATGATATCTGCTTATGGCCTTCATGGTGATGGGCACGAAGCACTAAAACTCTTTACTGAGATGTTGCATTCTGGGATTTCCCCAAGCGCGGTTACTTTTCTATCCGTCTTGTATGCGTGTAGCCATGCTGGCTTGGTGAGAGAAGGTGAAGAAATCTTCAATCATATGGTTCACAACCATGGCTTTGAGCCCTTGCCCGAGCATTATGCCTGCATGGTTGACATCCTTGGCAGAGCTGGAAAGTTAGAGAAGGCGTTGGACTTTATAGAGGAACTGCCAGTTGAGCCAGGTCCTCCTGTTTGGGGCGCATTGCTTGGTGCTTGCATGATTCACAGGAACACCAAACTGGCGCGTGTGGCTTCCGAAAGGCTATTTGAATTGGACCCCGATAATACAGGATATTATGTCTTGCTCTCCAATGTATACTCAGCTGACAGGAACTTTCCGAAGGCTGCTTCAGTGCGACAGGTAGTTAAGAATAGAAATTTGGCAAAGACTCCGGGATGCACTCTCGTTGAGATTGGTGAGACCCCACATGTTTTTACATGTGGTGATCGATCTCATCCTCAAGCAAAGGCAATCTATAGGATGCTGGATAAGTTAATGGGAAAAATGGCTGAGGCTGGATTTCAGACTGAGACTGTGACTGCTTTGCATGACGTTGAGGAGGAAGAGAAGGAGTTAATGATGAAGGTTCATAGTGAGAAGCTGGCCATTGCTTTTGCCCTGATTGAAACTGCACCAGGGACAGAAATTAGAATCTTTAAGAATCTCCGGGTTTGTTTGGATTGCCATAATGCAACAAAATTTATATCCAAGATCACAGAAAGAGTTATCGTATTGTTCTTGTGGAGACTATTGGTGACAAAAAGTTTTCTGCACCAGTATCTAGTTCTGCAGTTTCACATTGCTTCCATGGTAAAAAGTGGACAGTCACTTCATCATACTCTGGCATGGAATGACAATTGTTTCAACGCTCTCTTTCTGGTGTACGCCCGGCAAGCACTTGTAGCATATTTCCTGTTTGCATTGTATTCTGATTCATCTGGCTATTCAAATACAAGCCTCGACGATTTTCGAGATGTTACATTAGTGATCTGGTACCCTTTTTTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

956

Amino Acids

107.24

Weight (kDa)

8.82

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	576 - 624	9.7e-13	PPR repeat family
PPR_3	PF13812	576 - 623	2.4e-06	Pentatricopeptide repeat domain
PPR	PF01535	579 - 609	7.4e-09	PPR repeat
E_motif	PF20431	694 - 756	8e-15	E motif
Eplus_motif	PF20430	762 - 788	2.9e-06	E+ motif
DYW_deaminase	PF14432	792 - 864	3.1e-24	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30700
fragaria_vesca	FvH4_1g00680 FvH4_1g00680
malus_domestica	MD02G1005500.v1.1
prunus_persica	Prupe.7G265500_v2.0.a1
pyrus_communis	pycom02g00440 pycom15g13410
rosa_chinensis	RchiOBHm_Chr2g0085291
rosa_laevigata	RLG00000015675
rosa_multiflora	Rmu_sc0008510.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155480
rosa_rugosa	Rorug01G0459300
rosa_samantha	Rh2BG008500 Rh2CG009200 Rh2DG009500
rosa_wichuraiana	Rw2G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	111, 1179
Acc65I	GGTACC	1 cut(s)	2850
AccB1I	GGYRCC	1 cut(s)	2850
AccI	GTMKAC	3 cut(s)	1159, 1414, 2172
AccII	CGCG	6 cut(s)	354, 356, 434, 740, 1838, 2101
AciI	CCGC	8 cut(s)	265, 352, 594, 603, 640, 696, 983, 1838
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	3 cut(s)	693, 984, 2460
AcsI	RAATTY	7 cut(s)	139, 166, 259, 769, 1520, 2233, 2555
AcuI	CTGAAG	3 cut(s)	1073, 1365, 2190
AcvI	CACGTG	1 cut(s)	527
AfaI	GTAC	3 cut(s)	1279, 2741, 2852
AfiI	CCNNNNNNNGG	4 cut(s)	397, 639, 1837, 2051
AflIII	ACRYGT	4 cut(s)	191, 1665, 2284, 2294
AjnI	CCWGG	2 cut(s)	2035, 2491
AjuI	GAANNNNNNNTTGG	2 cut(s)	2219, 2251
AleI	CACNNNNGTG	1 cut(s)	525
Alw21I	GWGCWC	1 cut(s)	1570
Alw26I	GTCTC	6 cut(s)	295, 413, 1121, 2270, 2381, 2596
AlwI	GGATC	1 cut(s)	72
Ama87I	CYCGRG	3 cut(s)	816, 854, 1946
AoxI	GGCC	6 cut(s)	510, 693, 984, 1560, 1765, 2460
ApeKI	GCWGC	4 cut(s)	345, 348, 733, 2201
ApoI	RAATTY	7 cut(s)	139, 166, 259, 769, 1520, 2233, 2555
AseI	ATTAAT	1 cut(s)	15
Asp700I	GAANNNNTTC	2 cut(s)	377, 1706
Asp718I	GGTACC	1 cut(s)	2850
AspLEI	GCGC	8 cut(s)	356, 358, 436, 519, 742, 1838, 2057, 2101
AspS9I	GGNCC	3 cut(s)	1600, 2039, 2131
AsuC2I	CCSGG	5 cut(s)	817, 818, 2250, 2525, 2746
AsuII	TTCGAA	1 cut(s)	1109
AvaI	CYCGRG	3 cut(s)	816, 854, 1946
AvaII	GGWCC	3 cut(s)	1600, 2039, 2131
BaeGI	GKGCMC	2 cut(s)	1152, 1785
BalI	TGGCCA	1 cut(s)	2462
BanI	GGYRCC	1 cut(s)	2850
BanII	GRGCYC	1 cut(s)	1941
BbrPI	CACGTG	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	1296
Bbv12I	GWGCWC	1 cut(s)	1570
BbvCI	CCTCAGC	1 cut(s)	2367
BbvI	GCAGC	4 cut(s)	335, 357, 720, 2188
BccI	CCATC	6 cut(s)	551, 749, 839, 952, 1024, 1772
BceAI	ACGGC	3 cut(s)	671, 971, 1146
BcgI	CGANNNNNNTGC	4 cut(s)	1139, 1173, 1937, 1971
BciT130I	CCWGG	2 cut(s)	2037, 2493
BciVI	GTATCC	1 cut(s)	1190
BclI	TGATCA	1 cut(s)	1450
BcnI	CCSGG	5 cut(s)	817, 818, 2250, 2525, 2746
BcoDI	GTCTC	6 cut(s)	295, 413, 1121, 2270, 2381, 2596
BfaI	CTAG	3 cut(s)	1124, 1658, 2639
BfmI	CTRYAG	3 cut(s)	996, 2332, 2645
BfuI	GTATCC	1 cut(s)	1190
BglI	GCCNNNNNGGC	2 cut(s)	692, 1878
BglII	AGATCT	1 cut(s)	77
BisI	GCNGC	9 cut(s)	346, 349, 352, 594, 603, 696, 734, 984, 2202
BlpI	GCTNAGC	1 cut(s)	1569
BlsI	GCNGC	9 cut(s)	347, 350, 353, 595, 604, 697, 735, 985, 2203
Bme1390I	CCNGG	7 cut(s)	817, 818, 2037, 2250, 2493, 2525, 2746
Bme18I	GGWCC	3 cut(s)	1600, 2039, 2131
BmeT110I	CYCGRG	3 cut(s)	816, 854, 1946
BmgT120I	GGNCC	3 cut(s)	1600, 2039, 2131
BmiI	GGNNCC	3 cut(s)	1601, 2133, 2852
BmrFI	CCNGG	7 cut(s)	817, 818, 2037, 2250, 2493, 2525, 2746
BmsI	GCATC	4 cut(s)	1333, 1484, 2243, 2328
BpiI	GAAGAC	1 cut(s)	1296
Bpu10I	CCTNAGC	1 cut(s)	2367
Bpu1102I	GCTNAGC	1 cut(s)	1569
Bpu14I	TTCGAA	1 cut(s)	1109
BpuEI	CTTGAG	3 cut(s)	491, 1649, 2301
BpuMI	CCSGG	5 cut(s)	817, 818, 2250, 2525, 2746
Bsa29I	ATCGAT	2 cut(s)	129, 2305
BsaAI	YACGTR	2 cut(s)	194, 527
BsaI	GGTCTC	1 cut(s)	2270
BsaJI	CCNNGG	9 cut(s)	382, 583, 816, 1470, 1603, 1927, 1975, 2492, 2664
BsaWI	WCCGGW	1 cut(s)	1088
BsaXI	ACNNNNNCTCC	4 cut(s)	482, 512, 930, 960
Bsc4I	CCNNNNNNNGG	4 cut(s)	397, 639, 1837, 2051
Bse1I	ACTGG	5 cut(s)	1336, 2027, 2100, 2632, 2863
Bse3DI	GCAATG	4 cut(s)	1191, 2057, 2463, 2655
BseBI	CCWGG	2 cut(s)	2037, 2493
BseCI	ATCGAT	2 cut(s)	129, 2305
BseDI	CCNNGG	9 cut(s)	382, 583, 816, 1470, 1603, 1927, 1975, 2492, 2664
BseLI	CCNNNNNNNGG	4 cut(s)	397, 639, 1837, 2051
BseMI	GCAATG	4 cut(s)	1191, 2057, 2463, 2655
BseMII	CTCAG	5 cut(s)	1583, 1797, 2190, 2358, 2376
BseNI	ACTGG	5 cut(s)	1336, 2027, 2100, 2632, 2863
BsePI	GCGCGC	1 cut(s)	354
BseRI	GAGGAG	2 cut(s)	380, 2429
BseSI	GKGCMC	2 cut(s)	1152, 1785
BseX3I	CGGCCG	2 cut(s)	693, 984
BseXI	GCAGC	4 cut(s)	335, 357, 720, 2188
BsgI	GTGCAG	3 cut(s)	719, 2472, 2612
Bsh1236I	CGCG	6 cut(s)	354, 356, 434, 740, 1838, 2101
Bsh1285I	CGRYCG	2 cut(s)	696, 987
BshFI	GGCC	6 cut(s)	512, 695, 986, 1562, 1767, 2462
BshNI	GGYRCC	1 cut(s)	2850
BshVI	ATCGAT	2 cut(s)	129, 2305
BsiEI	CGRYCG	2 cut(s)	696, 987
BsiHKAI	GWGCWC	1 cut(s)	1570
BsiHKCI	CYCGRG	3 cut(s)	816, 854, 1946
BsiSI	CCGG	6 cut(s)	817, 1089, 1194, 2249, 2524, 2746
BslFI	GGGAC	1 cut(s)	2509
BslI	CCNNNNNNNGG	4 cut(s)	397, 639, 1837, 2051
BsmAI	GTCTC	6 cut(s)	295, 413, 1121, 2270, 2381, 2596
BsmBI	CGTCTC	1 cut(s)	1121
BsmFI	GGGAC	1 cut(s)	2509
BsmI	GAATGC	2 cut(s)	1750, 1816
BsnI	GGCC	6 cut(s)	512, 695, 986, 1562, 1767, 2462
Bso31I	GGTCTC	1 cut(s)	2270
BsoBI	CYCGRG	3 cut(s)	816, 854, 1946
Bsp119I	TTCGAA	1 cut(s)	1109
Bsp1286I	GDGCHC	4 cut(s)	1152, 1570, 1785, 1941
Bsp143I	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
Bsp1720I	GCTNAGC	1 cut(s)	1569
Bsp19I	CCATGG	3 cut(s)	1603, 1927, 2664
BspACI	CCGC	8 cut(s)	265, 352, 594, 603, 640, 696, 983, 1838
BspANI	GGCC	6 cut(s)	512, 695, 986, 1562, 1767, 2462
BspCNI	CTCAG	5 cut(s)	1582, 1798, 2189, 2359, 2377
BspDI	ATCGAT	2 cut(s)	129, 2305
BspFNI	CGCG	6 cut(s)	354, 356, 434, 740, 1838, 2101
BspLI	GGNNCC	3 cut(s)	1601, 2133, 2852
BspMAI	CTGCAG	2 cut(s)	1000, 2649
BspPI	GGATC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	1109
BspT107I	GGYRCC	1 cut(s)	2850
BspTNI	GGTCTC	1 cut(s)	2270
BsrDI	GCAATG	4 cut(s)	1191, 2057, 2463, 2655
BsrI	ACTGG	5 cut(s)	1336, 2027, 2100, 2632, 2863
BssECI	CCNNGG	9 cut(s)	382, 583, 816, 1470, 1603, 1927, 1975, 2492, 2664
BssHII	GCGCGC	1 cut(s)	354
BssMI	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
BssNAI	GTATAC	1 cut(s)	2173
BssT1I	CCWWGG	5 cut(s)	1470, 1603, 1927, 1975, 2664
Bst1107I	GTATAC	1 cut(s)	2173
Bst2UI	CCWGG	2 cut(s)	2037, 2493
Bst4CI	ACNGT	6 cut(s)	475, 868, 1405, 1543, 2392, 2682
Bst6I	CTCTTC	5 cut(s)	293, 539, 572, 1344, 2415
BstAPI	GCANNNNNTGC	1 cut(s)	1190
BstBAI	YACGTR	2 cut(s)	194, 527
BstBI	TTCGAA	1 cut(s)	1109
BstC8I	GCNNGC	8 cut(s)	356, 738, 1251, 1879, 1960, 2071, 2460, 2751
BstDEI	CTNAG	6 cut(s)	1458, 1569, 1806, 2176, 2367, 2385
BstDSI	CCRYGG	3 cut(s)	1603, 1927, 2664
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstFNI	CGCG	6 cut(s)	354, 356, 434, 740, 1838, 2101
BstHHI	GCGC	8 cut(s)	356, 358, 436, 519, 742, 1838, 2057, 2101
BstKTI	GATC	8 cut(s)	67, 80, 441, 1453, 2305, 2309, 2571, 2847
BstMAI	GTCTC	6 cut(s)	295, 413, 1121, 2270, 2381, 2596
BstMBI	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
BstMCI	CGRYCG	2 cut(s)	696, 987
BstNI	CCWGG	2 cut(s)	2037, 2493
BstNSI	RCATGY	3 cut(s)	1669, 2288, 2298
BstSCI	CCNGG	7 cut(s)	815, 816, 2035, 2248, 2491, 2523, 2744
BstSFI	CTRYAG	3 cut(s)	996, 2332, 2645
BstSLI	GKGCMC	2 cut(s)	1152, 1785
BstUI	CGCG	6 cut(s)	354, 356, 434, 740, 1838, 2101
BstV1I	GCAGC	4 cut(s)	335, 357, 720, 2188
BstV2I	GAAGAC	1 cut(s)	1296
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BstZ17I	GTATAC	1 cut(s)	2173
BstZI	CGGCCG	2 cut(s)	693, 984
Bsu15I	ATCGAT	2 cut(s)	129, 2305
BsuI	GTATCC	1 cut(s)	1190
BsuRI	GGCC	6 cut(s)	512, 695, 986, 1562, 1767, 2462
BsuTUI	ATCGAT	2 cut(s)	129, 2305
BtgI	CCRYGG	3 cut(s)	1603, 1927, 2664
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	3 cut(s)	1005, 1329, 2214
Cac8I	GCNNGC	8 cut(s)	356, 738, 1251, 1879, 1960, 2071, 2460, 2751
CfoI	GCGC	8 cut(s)	356, 358, 436, 519, 742, 1838, 2057, 2101
Cfr13I	GGNCC	3 cut(s)	1600, 2039, 2131
Cfr9I	CCCGGG	1 cut(s)	816
ClaI	ATCGAT	2 cut(s)	129, 2305
Csp6I	GTAC	3 cut(s)	1278, 2740, 2851
CviQI	GTAC	3 cut(s)	1278, 2740, 2851
DdeI	CTNAG	6 cut(s)	1458, 1569, 1806, 2176, 2367, 2385
DpnI	GATC	8 cut(s)	66, 79, 440, 1452, 2304, 2308, 2570, 2846
DpnII	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	3 cut(s)	693, 984, 2460
EagI	CGGCCG	2 cut(s)	693, 984
Eam1104I	CTCTTC	5 cut(s)	293, 539, 572, 1344, 2415
EarI	CTCTTC	5 cut(s)	293, 539, 572, 1344, 2415
EclXI	CGGCCG	2 cut(s)	693, 984
Eco130I	CCWWGG	5 cut(s)	1470, 1603, 1927, 1975, 2664
Eco24I	GRGCYC	1 cut(s)	1941
Eco31I	GGTCTC	1 cut(s)	2270
Eco32I	GATATC	3 cut(s)	888, 1064, 1755
Eco47I	GGWCC	3 cut(s)	1600, 2039, 2131
Eco52I	CGGCCG	2 cut(s)	693, 984
Eco57I	CTGAAG	3 cut(s)	1073, 1365, 2190
Eco72I	CACGTG	1 cut(s)	527
Eco88I	CYCGRG	3 cut(s)	816, 854, 1946
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	2039
EcoRI	GAATTC	2 cut(s)	259, 1520
EcoRII	CCWGG	2 cut(s)	2035, 2491
EcoRV	GATATC	3 cut(s)	888, 1064, 1755
EcoT14I	CCWWGG	5 cut(s)	1470, 1603, 1927, 1975, 2664
EcoT38I	GRGCYC	1 cut(s)	1941
ErhI	CCWWGG	5 cut(s)	1470, 1603, 1927, 1975, 2664
Esp3I	CGTCTC	1 cut(s)	1121
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	1 cut(s)	2509
FauI	CCCGC	1 cut(s)	272
FauNDI	CATATG	1 cut(s)	1914
FbaI	TGATCA	1 cut(s)	1450
FblI	GTMKAC	3 cut(s)	1159, 1414, 2172
Fnu4HI	GCNGC	9 cut(s)	346, 349, 352, 594, 603, 696, 734, 984, 2202
FriOI	GRGCYC	1 cut(s)	1941
Fsp4HI	GCNGC	9 cut(s)	346, 349, 352, 594, 603, 696, 734, 984, 2202
FspBI	CTAG	3 cut(s)	1124, 1658, 2639
GlaI	GCGC	8 cut(s)	355, 357, 435, 518, 741, 1837, 2056, 2100
GluI	GCNGC	9 cut(s)	346, 349, 352, 594, 603, 696, 734, 984, 2202
HaeIII	GGCC	6 cut(s)	512, 695, 986, 1562, 1767, 2462
HapII	CCGG	6 cut(s)	817, 1089, 1194, 2249, 2524, 2746
HhaI	GCGC	8 cut(s)	356, 358, 436, 519, 742, 1838, 2057, 2101
Hin6I	GCGC	8 cut(s)	354, 356, 434, 517, 740, 1836, 2055, 2099
HinP1I	GCGC	8 cut(s)	354, 356, 434, 517, 740, 1836, 2055, 2099
HincII	GTYRAC	4 cut(s)	796, 1160, 1663, 1969
HindII	GTYRAC	4 cut(s)	796, 1160, 1663, 1969
HindIII	AAGCTT	1 cut(s)	809
HpaII	CCGG	6 cut(s)	817, 1089, 1194, 2249, 2524, 2746
Hpy188III	TCNNGA	4 cut(s)	45, 245, 1628, 2828
Hpy99I	CGWCG	4 cut(s)	578, 976, 979, 2822
HpyCH4III	ACNGT	6 cut(s)	475, 868, 1405, 1543, 2392, 2682
HpyCH4IV	ACGT	6 cut(s)	118, 193, 526, 573, 977, 2409
HpyF3I	CTNAG	6 cut(s)	1458, 1569, 1806, 2176, 2367, 2385
HpySE526I	ACGT	6 cut(s)	118, 193, 526, 573, 977, 2409
HspAI	GCGC	8 cut(s)	354, 356, 434, 517, 740, 1836, 2055, 2099
KpnI	GGTACC	1 cut(s)	2854
Ksp22I	TGATCA	1 cut(s)	1450
Kzo9I	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
LmnI	GCTCC	5 cut(s)	47, 298, 1120, 1577, 1683
Lsp1109I	GCAGC	4 cut(s)	335, 357, 720, 2188
LweI	GCATC	4 cut(s)	1333, 1484, 2243, 2328
MaeI	CTAG	3 cut(s)	1124, 1658, 2639
MaeII	ACGT	6 cut(s)	118, 193, 526, 573, 977, 2409
MalI	GATC	8 cut(s)	66, 79, 440, 1452, 2304, 2308, 2570, 2846
MboI	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
MfeI	CAATTG	2 cut(s)	1281, 2713
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	4 cut(s)	1152, 1570, 1785, 1941
MlsI	TGGCCA	1 cut(s)	2462
MluNI	TGGCCA	1 cut(s)	2462
MlyI	GAGTC	4 cut(s)	381, 421, 1640, 2239
MmeI	TCCRAC	3 cut(s)	42, 525, 1986
Mox20I	TGGCCA	1 cut(s)	2462
MroXI	GAANNNNTTC	2 cut(s)	377, 1706
MscI	TGGCCA	1 cut(s)	2462
MslI	CAYNNNNRTG	4 cut(s)	525, 1071, 1776, 1926
Msp20I	TGGCCA	1 cut(s)	2462
MspA1I	CMGCKG	2 cut(s)	348, 2180
MspI	CCGG	6 cut(s)	817, 1089, 1194, 2249, 2524, 2746
MspR9I	CCNGG	7 cut(s)	817, 818, 2037, 2250, 2493, 2525, 2746
MunI	CAATTG	2 cut(s)	1281, 2713
Mva1269I	GAATGC	2 cut(s)	1750, 1816
MvaI	CCWGG	2 cut(s)	2037, 2493
MvnI	CGCG	6 cut(s)	354, 356, 434, 740, 1838, 2101
NciI	CCSGG	5 cut(s)	817, 818, 2250, 2525, 2746
NcoI	CCATGG	3 cut(s)	1603, 1927, 2664
NdeI	CATATG	1 cut(s)	1914
NdeII	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
NlaIV	GGNNCC	3 cut(s)	1601, 2133, 2852
NmuCI	GTSAC	6 cut(s)	475, 527, 1735, 2392, 2611, 2682
NspI	RCATGY	3 cut(s)	1669, 2288, 2298
NspV	TTCGAA	1 cut(s)	1109
OliI	CACNNNNGTG	1 cut(s)	525
PauI	GCGCGC	1 cut(s)	354
PciI	ACATGT	3 cut(s)	1665, 2284, 2294
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PctI	GAATGC	2 cut(s)	1750, 1816
PdmI	GAANNNNTTC	2 cut(s)	377, 1706
PfoI	TCCNGGA	1 cut(s)	2248
PkrI	GCNGC	9 cut(s)	347, 350, 353, 595, 604, 697, 735, 985, 2203
PleI	GAGTC	4 cut(s)	381, 421, 1639, 2239
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
PpsI	GAGTC	4 cut(s)	381, 421, 1639, 2239
Ppu21I	YACGTR	2 cut(s)	194, 527
PpuMI	RGGWCCY	1 cut(s)	2039
PscI	ACATGT	3 cut(s)	1665, 2284, 2294
PshBI	ATTAAT	1 cut(s)	15
PsiI	TTATAA	2 cut(s)	111, 1179
Psp5II	RGGWCCY	1 cut(s)	2039
Psp6I	CCWGG	2 cut(s)	2035, 2491
PspCI	CACGTG	1 cut(s)	527
PspGI	CCWGG	2 cut(s)	2035, 2491
PspN4I	GGNNCC	3 cut(s)	1601, 2133, 2852
PspPI	GGNCC	3 cut(s)	1600, 2039, 2131
PspPPI	RGGWCCY	1 cut(s)	2039
PstI	CTGCAG	2 cut(s)	1000, 2649
PsuI	RGATCY	1 cut(s)	77
PteI	GCGCGC	1 cut(s)	354
PvuII	CAGCTG	2 cut(s)	348, 2180
RsaI	GTAC	3 cut(s)	1279, 2741, 2852
RsaNI	GTAC	3 cut(s)	1278, 2740, 2851
RseI	CAYNNNNRTG	4 cut(s)	525, 1071, 1776, 1926
SalI	GTCGAC	1 cut(s)	1158
SatI	GCNGC	9 cut(s)	346, 349, 352, 594, 603, 696, 734, 984, 2202
Sau3AI	GATC	8 cut(s)	64, 77, 438, 1450, 2302, 2306, 2568, 2844
Sau96I	GGNCC	3 cut(s)	1600, 2039, 2131
SchI	GAGTC	4 cut(s)	381, 421, 1640, 2239
ScrFI	CCNGG	7 cut(s)	817, 818, 2037, 2250, 2493, 2525, 2746
SduI	GDGCHC	4 cut(s)	1152, 1570, 1785, 1941
SfaNI	GCATC	4 cut(s)	1333, 1484, 2243, 2328
SfcI	CTRYAG	3 cut(s)	996, 2332, 2645
SfuI	TTCGAA	1 cut(s)	1109
SinI	GGWCC	3 cut(s)	1600, 2039, 2131
SmaI	CCCGGG	1 cut(s)	818
SmiMI	CAYNNNNRTG	4 cut(s)	525, 1071, 1776, 1926
SmlI	CTYRAG	3 cut(s)	506, 1628, 2316
SmoI	CTYRAG	3 cut(s)	506, 1628, 2316
SsiI	CCGC	8 cut(s)	265, 352, 594, 603, 640, 696, 983, 1838
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	3 cut(s)	1124, 1658, 2639
StyD4I	CCNGG	7 cut(s)	815, 816, 2035, 2248, 2491, 2523, 2744
StyI	CCWWGG	5 cut(s)	1470, 1603, 1927, 1975, 2664
TaaI	ACNGT	6 cut(s)	475, 868, 1405, 1543, 2392, 2682
TaiI	ACGT	6 cut(s)	121, 196, 529, 576, 980, 2412
TaqII	GACCGA	1 cut(s)	1304
TatI	WGTACW	1 cut(s)	1277
TauI	GCSGC	5 cut(s)	354, 596, 605, 698, 986
TscAI	CASTG	3 cut(s)	1005, 1336, 2214
TseFI	GTSAC	6 cut(s)	475, 527, 1735, 2392, 2611, 2682
TseI	GCWGC	4 cut(s)	345, 348, 733, 2201
Tsp45I	GTSAC	6 cut(s)	475, 527, 1735, 2392, 2611, 2682
TspGWI	ACGGA	2 cut(s)	1493, 1843
TspMI	CCCGGG	1 cut(s)	816
TspRI	CASTG	3 cut(s)	1005, 1336, 2214
VpaK11BI	GGWCC	3 cut(s)	1600, 2039, 2131
VspI	ATTAAT	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	7 cut(s)	139, 166, 259, 769, 1520, 2233, 2555
XceI	RCATGY	3 cut(s)	1669, 2288, 2298
XmaI	CCCGGG	1 cut(s)	816
XmiI	GTMKAC	3 cut(s)	1159, 1414, 2172
XmnI	GAANNNNTTC	2 cut(s)	377, 1706
XspI	CTAG	3 cut(s)	1124, 1658, 2639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.