Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015212

Physical Location & Seq

Genomic Coordinates Forward (+)

9144650 .. 9147019

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGATTAGCAGGAACATAAGCAGCTGCCGCGCGCCACAATTTGATCGGAATTTCTTCCTCGGACTTCTCAACAAGGCGACCTGTCTTTCTCACCTGATCCAGACCCACGCGCAGATCATCCTCAATGGTTACCAAAACGACCTCGCCACCGTCACCAAGCTCACCCACAAGTTCTCCGACCTCAAGGCCATGCGCAACGCACGTGACCTCTTCCTCTCCATCCCAAGACCTGACCTTTTCCTCTTCAACGTCGTCATCCGAGGCTTCGCCGCCAATGCCGCGCCTTTCTCTGCGATTTCTCTCTACACCCATTTGCGGAAGAATACTAATCTTAAACCCGACAAGTTTACCTACGCTTTCGCCGTGTCGGCCGCTTCGGGGTTTAAGGACGAGAAATATGGGATTTTGCTGCACGCCCATTCGATTGTTGATGGGTTAGGATCGAATTTGTATGTCGGGTCGATTGTTGTTGACTTCTACTTCAAGTTTTCCCGGGTTGAGCTAGCACAGAAGGTGTTTGATGGAATGCCCGAAAAGGACACGGTTTTGTGGAATACGATGATATCTGGGTTGGTGAGGAATTGTTATTACGCCGATTCGATGCAGGTTTTTGGAGATATGGTTGGGGGTGGGATGGGTTTTGATTCGACAACTTTGGCAACCGTGCTTCCTGCAGTGGCAGAGTTGCAGGAGTTGAAATCAGGCATAGGAGTTCATTGCTTGGCTCTCAAGGCTGGATATCATTCAGATGTTCATGTGCTTACAGGATTGGTTTCGTTGTATTCGAAATGTAAGGAGCTAGAGACAGCAAGGTTGTTATTTGGGCACATTAGTCAGCCGGATTTGATATGTTATAATGCAATGATTGCTGGATACACTTGGAACAATGAGACCGAATCATCTGTTAGTCTTTTCAGGGATTTGCTTGCTTCTGGGGAGAAAGTTAATTCAAGCACAATTGTTGGGTTGATTCCTGTGTCTTCTCCCTTTGGTCATCTGCATCTCACTGGCTCTCTTCAAACCTTCTGTGTGAAATCTGGTATTGTTTCGCATCCTTCTGTCTCGACTGCGTTTGTTACTGTTTATTGTAGACTGAATGAGATTGAATTGGCACGACAGCTTTTTGATCATTCGAAGGAGAAAACTTTGGCATCTTGGAACGCCATGATCTCAGGTTATACCCAAAACGGGCTGACGGAGACTGCAATATCTCTTTTCCACGAAATGATGTCCAAATTCAATCCAAACCCTGTTACAGTTACAAGTATTCTTTCGGCCTGTGCTCAGCTCGGAGCCATAAGTCTTGGGAAATGGGTCCATGGTTTGATTAAGAGCAAAAATCTTGAGTCTAACATCTATGTATTGACTTCTCTAGTTGACATGTATGCAAAGTGTGGGAGCGTTGTGGAAGCTCGGAAGTTATTTGACTCGATGACAGAGAAAAATGTGGTTACTTGGAATGCCATGATATCTGCTTACGGCCTTCATGGTGATGGGCACGAAGCACTAAAACTCTTTACAGAGATGTTGCATTCTAGGATTTCCCCAAGCGCGGTTACTTTTCTATCTGTCTTGTATGCTTGTAGCCATGCGGGCTTGGTGAGAGAAGGTGAAGAGATCTTCGATCATATGGTTCACAACCATGGCTTTGAGCCCTTGCCCGAGCATTATGCCTGCATGGTTGACATCCTTGGCAGAGCTGGAAAGTTAGAGAAGGCGTTGGAATTTATAAAGGAAATGCCAGTTGAGCCAGGTCCTCCCGTTTGGGGTGCATTGCTTGGTGCTTGTATGATTCACAAGAACACCGAACTGGCGCGTGTGGCTTCTGAAAGGCTATTTGAACTAGACCCAGATAATACAGGATATTATGTCTTGCTCTCCAACGTATACTCAGCTGACAGGAACTTTCTGAAGGCTGCTTCTGTACGACAGGTAGTTAAGAATAGAAATTTGGCAAAGACTCCGGGATGCACTCTCGTTGAGATTGGTGAGACCCCGCATGTGTTTACATGTGGTGATCGATCTCATCCTCAAACAACGGCAATCTACAGGATGCTGGATGAGTTAATGGGAAAAATGGCAGAGGCTGGATTTCAGACTGAAACTGTGACTGCTTTGCATGACGTTGAGGAGGAAGAGAAGGAGTTAATGATGAAGGTTCATAGTGAGAAGCTGGCCATTGCTTTTGCCCTGATTGAAACAGCACCCGGGACAGAAATTAGAATCTTTAAGAATCTCCGGGTTTGTTTGGATTGCCATAATGCAACTAAATTTATATCCAAGATCACAGAAAGAGTTATTGTAGTTAGAGATGCTAATAGATTCCATCATTTCAAAGACGGAGTTTGTTCCTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

790

Amino Acids

87.35

Weight (kDa)

6.62

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	384 - 428	4.2e-09	PPR repeat family
PPR	PF01535	385 - 412	5.8e-08	PPR repeat
PPR_2	PF13041	481 - 529	6.4e-12	PPR repeat family
PPR_3	PF13812	481 - 528	2.9e-06	Pentatricopeptide repeat domain
PPR	PF01535	484 - 512	3.1e-08	PPR repeat
E_motif	PF20431	599 - 661	1.1e-16	E motif
DYW_deaminase	PF14432	697 - 789	6.6e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30700
fragaria_vesca	FvH4_1g00680 FvH4_1g00680
malus_domestica	MD02G1005500.v1.1
prunus_persica	Prupe.7G265500_v2.0.a1
pyrus_communis	pycom02g00440 pycom15g13410
rosa_chinensis	RchiOBHm_Chr2g0085291
rosa_laevigata	RLG00000015675
rosa_multiflora	Rmu_sc0008510.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155480
rosa_rugosa	Rorug01G0459300
rosa_samantha	Rh2BG008500 Rh2CG009200 Rh2DG009500
rosa_wichuraiana	Rw2G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	855, 1730
Acc16I	TGCGCA	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	595
AccI	GTMKAC	2 cut(s)	1090, 1887
AccII	CGCG	6 cut(s)	30, 32, 110, 281, 1553, 1816
AciI	CCGC	8 cut(s)	28, 270, 279, 316, 372, 1553, 1592, 1997
AclWI	GGATC	2 cut(s)	91, 448
AcoI	YGGCCR	2 cut(s)	369, 2175
AcsI	RAATTY	6 cut(s)	49, 445, 1235, 1724, 1948, 2270
AcuI	CTGAAG	1 cut(s)	1931
AcvI	CACGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	1926
AfiI	CCNNNNNNNGG	5 cut(s)	315, 378, 1188, 1552, 1766
AflIII	ACRYGT	2 cut(s)	1380, 2009
AjnI	CCWGG	1 cut(s)	1750
AjuI	GAANNNNNNNTTGG	2 cut(s)	1934, 1966
Alw21I	GWGCWC	1 cut(s)	1285
Alw26I	GTCTC	6 cut(s)	797, 884, 1066, 1193, 1985, 2352
AlwI	GGATC	2 cut(s)	91, 448
AlwNI	CAGNNNCTG	1 cut(s)	2087
Ama87I	CYCGRG	3 cut(s)	492, 1661, 2207
AoxI	GGCC	5 cut(s)	186, 369, 1275, 1480, 2175
ApeKI	GCWGC	4 cut(s)	21, 24, 409, 1916
ApoI	RAATTY	6 cut(s)	49, 445, 1235, 1724, 1948, 2270
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	7 cut(s)	32, 34, 112, 195, 283, 1553, 1816
AspS9I	GGNCC	2 cut(s)	1315, 1754
AsuC2I	CCSGG	6 cut(s)	493, 494, 1965, 2208, 2209, 2240
AsuHPI	GGTGA	9 cut(s)	83, 145, 154, 586, 1502, 1612, 1622, 2000, 2027
AsuII	TTCGAA	2 cut(s)	785, 1133
AsuNHI	GCTAGC	1 cut(s)	502
AvaI	CYCGRG	3 cut(s)	492, 1661, 2207
AvaII	GGWCC	2 cut(s)	1315, 1754
BaeGI	GKGCMC	2 cut(s)	828, 1500
BalI	TGGCCA	1 cut(s)	2177
BanII	GRGCYC	1 cut(s)	1656
BbrPI	CACGTG	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	1 cut(s)	1285
BbvI	GCAGC	4 cut(s)	11, 33, 396, 1903
BccI	CCATC	6 cut(s)	227, 425, 515, 628, 1487, 2334
BceAI	ACGGC	3 cut(s)	347, 1495, 2055
BcgI	CGANNNNNNTGC	2 cut(s)	1652, 1686
BciT130I	CCWGG	1 cut(s)	1752
BciVI	GTATCC	1 cut(s)	866
BclI	TGATCA	1 cut(s)	1126
BcnI	CCSGG	6 cut(s)	493, 494, 1965, 2208, 2209, 2240
BcoDI	GTCTC	6 cut(s)	797, 884, 1066, 1193, 1985, 2352
BfaI	CTAG	5 cut(s)	503, 800, 1373, 1536, 1844
BfmI	CTRYAG	2 cut(s)	672, 2047
BfuAI	ACCTGC	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	866
BglI	GCCNNNNNGGC	2 cut(s)	368, 1593
BglII	AGATCT	1 cut(s)	1617
BisI	GCNGC	8 cut(s)	22, 25, 28, 270, 279, 372, 410, 1917
BlpI	GCTNAGC	1 cut(s)	1284
BlsI	GCNGC	8 cut(s)	23, 26, 29, 271, 280, 373, 411, 1918
Bme1390I	CCNGG	7 cut(s)	493, 494, 1752, 1965, 2208, 2209, 2240
Bme18I	GGWCC	2 cut(s)	1315, 1754
BmeT110I	CYCGRG	3 cut(s)	492, 1661, 2207
BmgT120I	GGNCC	2 cut(s)	1315, 1754
BmiI	GGNNCC	2 cut(s)	1294, 1316
BmrFI	CCNGG	7 cut(s)	493, 494, 1752, 1965, 2208, 2209, 2240
BmsI	GCATC	7 cut(s)	591, 1009, 1060, 1160, 1958, 2043, 2302
BmtI	GCTAGC	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	972
Bpu1102I	GCTNAGC	1 cut(s)	1284
Bpu14I	TTCGAA	2 cut(s)	785, 1133
BpuEI	CTTGAG	3 cut(s)	167, 713, 1364
BpuMI	CCSGG	6 cut(s)	493, 494, 1965, 2208, 2209, 2240
Bsa29I	ATCGAT	1 cut(s)	2020
BsaAI	YACGTR	1 cut(s)	203
BsaI	GGTCTC	2 cut(s)	884, 1985
BsaJI	CCNNGG	7 cut(s)	58, 259, 492, 1318, 1642, 1690, 2207
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 606, 636
Bsc4I	CCNNNNNNNGG	5 cut(s)	315, 378, 1188, 1552, 1766
Bse1I	ACTGG	3 cut(s)	1012, 1742, 1815
Bse3DI	GCAATG	4 cut(s)	715, 867, 1772, 2178
BseBI	CCWGG	1 cut(s)	1752
BseCI	ATCGAT	1 cut(s)	2020
BseDI	CCNNGG	7 cut(s)	58, 259, 492, 1318, 1642, 1690, 2207
BseLI	CCNNNNNNNGG	5 cut(s)	315, 378, 1188, 1552, 1766
BseMI	GCAATG	4 cut(s)	715, 867, 1772, 2178
BseMII	CTCAG	3 cut(s)	1185, 1298, 1905
BseNI	ACTGG	3 cut(s)	1012, 1742, 1815
BsePI	GCGCGC	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	2144
BseSI	GKGCMC	2 cut(s)	828, 1500
BseX3I	CGGCCG	1 cut(s)	369
BseXI	GCAGC	4 cut(s)	11, 33, 396, 1903
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	6 cut(s)	30, 32, 110, 281, 1553, 1816
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	5 cut(s)	188, 371, 1277, 1482, 2177
BshVI	ATCGAT	1 cut(s)	2020
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	1285
BsiHKCI	CYCGRG	3 cut(s)	492, 1661, 2207
BsiSI	CCGG	5 cut(s)	493, 839, 1964, 2208, 2239
BslFI	GGGAC	1 cut(s)	2224
BslI	CCNNNNNNNGG	5 cut(s)	315, 378, 1188, 1552, 1766
BsmAI	GTCTC	6 cut(s)	797, 884, 1066, 1193, 1985, 2352
BsmFI	GGGAC	1 cut(s)	2224
BsmI	GAATGC	3 cut(s)	531, 1465, 1531
BsnI	GGCC	5 cut(s)	188, 371, 1277, 1482, 2177
Bso31I	GGTCTC	2 cut(s)	884, 1985
BsoBI	CYCGRG	3 cut(s)	492, 1661, 2207
Bsp119I	TTCGAA	2 cut(s)	785, 1133
Bsp1286I	GDGCHC	4 cut(s)	828, 1285, 1500, 1656
Bsp1720I	GCTNAGC	1 cut(s)	1284
Bsp19I	CCATGG	2 cut(s)	1318, 1642
BspACI	CCGC	8 cut(s)	28, 270, 279, 316, 372, 1553, 1592, 1997
BspANI	GGCC	5 cut(s)	188, 371, 1277, 1482, 2177
BspCNI	CTCAG	3 cut(s)	1184, 1297, 1904
BspDI	ATCGAT	1 cut(s)	2020
BspFNI	CGCG	6 cut(s)	30, 32, 110, 281, 1553, 1816
BspLI	GGNNCC	2 cut(s)	1294, 1316
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	91, 448
BspT104I	TTCGAA	2 cut(s)	785, 1133
BspTNI	GGTCTC	2 cut(s)	884, 1985
BsrDI	GCAATG	4 cut(s)	715, 867, 1772, 2178
BsrI	ACTGG	3 cut(s)	1012, 1742, 1815
BssECI	CCNNGG	7 cut(s)	58, 259, 492, 1318, 1642, 1690, 2207
BssHII	GCGCGC	1 cut(s)	30
BssNAI	GTATAC	1 cut(s)	1888
BssT1I	CCWWGG	3 cut(s)	1318, 1642, 1690
Bst1107I	GTATAC	1 cut(s)	1888
Bst2UI	CCWGG	1 cut(s)	1752
Bst4CI	ACNGT	6 cut(s)	151, 544, 664, 1081, 1258, 2107
Bst6I	CTCTTC	5 cut(s)	215, 248, 1020, 1608, 2130
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstBAI	YACGTR	1 cut(s)	203
BstBI	TTCGAA	2 cut(s)	785, 1133
BstC8I	GCNNGC	7 cut(s)	32, 414, 504, 927, 1594, 1675, 2175
BstDEI	CTNAG	3 cut(s)	1171, 1284, 1891
BstDSI	CCRYGG	2 cut(s)	1318, 1642
BstEII	GGTNACC	1 cut(s)	128
BstFNI	CGCG	6 cut(s)	30, 32, 110, 281, 1553, 1816
BstHHI	GCGC	7 cut(s)	32, 34, 112, 195, 283, 1553, 1816
BstMAI	GTCTC	6 cut(s)	797, 884, 1066, 1193, 1985, 2352
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 275, 278, 368, 731, 866, 1593, 1747, 1820
BstNI	CCWGG	1 cut(s)	1752
BstNSI	RCATGY	3 cut(s)	1384, 2003, 2013
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	7 cut(s)	491, 492, 1750, 1963, 2206, 2207, 2238
BstSFI	CTRYAG	2 cut(s)	672, 2047
BstSLI	GKGCMC	2 cut(s)	828, 1500
BstUI	CGCG	6 cut(s)	30, 32, 110, 281, 1553, 1816
BstV1I	GCAGC	4 cut(s)	11, 33, 396, 1903
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	1 cut(s)	1617
BstYI	RGATCY	1 cut(s)	1617
BstZ17I	GTATAC	1 cut(s)	1888
BstZI	CGGCCG	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	2020
BsuI	GTATCC	1 cut(s)	866
BsuRI	GGCC	5 cut(s)	188, 371, 1277, 1482, 2177
BsuTUI	ATCGAT	1 cut(s)	2020
BtgI	CCRYGG	2 cut(s)	1318, 1642
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	681, 1005
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	7 cut(s)	32, 414, 504, 927, 1594, 1675, 2175
CaiI	CAGNNNCTG	1 cut(s)	2087
CfoI	GCGC	7 cut(s)	32, 34, 112, 195, 283, 1553, 1816
Cfr13I	GGNCC	2 cut(s)	1315, 1754
Cfr9I	CCCGGG	2 cut(s)	492, 2207
ClaI	ATCGAT	1 cut(s)	2020
Csp6I	GTAC	1 cut(s)	1925
CviQI	GTAC	1 cut(s)	1925
DdeI	CTNAG	3 cut(s)	1171, 1284, 1891
EaeI	YGGCCR	2 cut(s)	369, 2175
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	5 cut(s)	215, 248, 1020, 1608, 2130
EarI	CTCTTC	5 cut(s)	215, 248, 1020, 1608, 2130
EclXI	CGGCCG	1 cut(s)	369
Eco130I	CCWWGG	3 cut(s)	1318, 1642, 1690
Eco24I	GRGCYC	1 cut(s)	1656
Eco31I	GGTCTC	2 cut(s)	884, 1985
Eco32I	GATATC	3 cut(s)	564, 740, 1470
Eco47I	GGWCC	2 cut(s)	1315, 1754
Eco52I	CGGCCG	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	1931
Eco72I	CACGTG	1 cut(s)	203
Eco88I	CYCGRG	3 cut(s)	492, 1661, 2207
Eco91I	GGTNACC	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	1754
EcoO65I	GGTNACC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	1750
EcoRV	GATATC	3 cut(s)	564, 740, 1470
EcoT14I	CCWWGG	3 cut(s)	1318, 1642, 1690
EcoT38I	GRGCYC	1 cut(s)	1656
ErhI	CCWWGG	3 cut(s)	1318, 1642, 1690
FaqI	GGGAC	1 cut(s)	2224
FauI	CCCGC	2 cut(s)	1585, 2004
FauNDI	CATATG	1 cut(s)	1629
FbaI	TGATCA	1 cut(s)	1126
FblI	GTMKAC	2 cut(s)	1090, 1887
Fnu4HI	GCNGC	8 cut(s)	22, 25, 28, 270, 279, 372, 410, 1917
FriOI	GRGCYC	1 cut(s)	1656
Fsp4HI	GCNGC	8 cut(s)	22, 25, 28, 270, 279, 372, 410, 1917
FspBI	CTAG	5 cut(s)	503, 800, 1373, 1536, 1844
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	7 cut(s)	31, 33, 111, 194, 282, 1552, 1815
GluI	GCNGC	8 cut(s)	22, 25, 28, 270, 279, 372, 410, 1917
HaeIII	GGCC	5 cut(s)	188, 371, 1277, 1482, 2177
HapII	CCGG	5 cut(s)	493, 839, 1964, 2208, 2239
HhaI	GCGC	7 cut(s)	32, 34, 112, 195, 283, 1553, 1816
Hin6I	GCGC	7 cut(s)	30, 32, 110, 193, 281, 1551, 1814
HinP1I	GCGC	7 cut(s)	30, 32, 110, 193, 281, 1551, 1814
HincII	GTYRAC	3 cut(s)	472, 1378, 1684
HindII	GTYRAC	3 cut(s)	472, 1378, 1684
HpaII	CCGG	5 cut(s)	493, 839, 1964, 2208, 2239
HphI	GGTGA	9 cut(s)	83, 145, 154, 586, 1502, 1612, 1622, 2000, 2027
Hpy166II	GTNNAC	8 cut(s)	348, 472, 1091, 1378, 1636, 1684, 1888, 2007
Hpy188III	TCNNGA	3 cut(s)	100, 1063, 1343
Hpy8I	GTNNAC	8 cut(s)	348, 472, 1091, 1378, 1636, 1684, 1888, 2007
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	6 cut(s)	151, 544, 664, 1081, 1258, 2107
HpyCH4IV	ACGT	4 cut(s)	202, 249, 1884, 2124
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 275, 278, 368, 731, 866, 1593, 1747, 1820
HpyF3I	CTNAG	3 cut(s)	1171, 1284, 1891
HpySE526I	ACGT	4 cut(s)	202, 249, 1884, 2124
HspAI	GCGC	7 cut(s)	30, 32, 110, 193, 281, 1551, 1814
Ksp22I	TGATCA	1 cut(s)	1126
LmnI	GCTCC	3 cut(s)	796, 1292, 1398
Lsp1109I	GCAGC	4 cut(s)	11, 33, 396, 1903
LweI	GCATC	7 cut(s)	591, 1009, 1060, 1160, 1958, 2043, 2302
MaeI	CTAG	5 cut(s)	503, 800, 1373, 1536, 1844
MaeII	ACGT	4 cut(s)	202, 249, 1884, 2124
MaeIII	GTNAC	9 cut(s)	128, 151, 203, 1075, 1252, 1258, 1450, 1555, 2107
MboII	GAAGA	9 cut(s)	46, 202, 235, 331, 972, 1007, 1612, 1625, 2147
MfeI	CAATTG	1 cut(s)	957
MflI	RGATCY	1 cut(s)	1617
MhlI	GDGCHC	4 cut(s)	828, 1285, 1500, 1656
MlsI	TGGCCA	1 cut(s)	2177
MluNI	TGGCCA	1 cut(s)	2177
MlyI	GAGTC	3 cut(s)	1355, 1421, 1954
MmeI	TCCRAC	3 cut(s)	201, 1701, 1905
Mox20I	TGGCCA	1 cut(s)	2177
MroXI	GAANNNNTTC	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	2177
MseI	TTAA	8 cut(s)	333, 384, 945, 1329, 1938, 2066, 2147, 2229
MslI	CAYNNNNRTG	3 cut(s)	747, 1491, 1641
Msp20I	TGGCCA	1 cut(s)	2177
MspA1I	CMGCKG	2 cut(s)	24, 1895
MspI	CCGG	5 cut(s)	493, 839, 1964, 2208, 2239
MspR9I	CCNGG	7 cut(s)	493, 494, 1752, 1965, 2208, 2209, 2240
MunI	CAATTG	1 cut(s)	957
Mva1269I	GAATGC	3 cut(s)	531, 1465, 1531
MvaI	CCWGG	1 cut(s)	1752
MvnI	CGCG	6 cut(s)	30, 32, 110, 281, 1553, 1816
MwoI	GCNNNNNNNGC	9 cut(s)	27, 275, 278, 368, 731, 866, 1593, 1747, 1820
NciI	CCSGG	6 cut(s)	493, 494, 1965, 2208, 2209, 2240
NcoI	CCATGG	2 cut(s)	1318, 1642
NdeI	CATATG	1 cut(s)	1629
NheI	GCTAGC	1 cut(s)	502
NlaIV	GGNNCC	2 cut(s)	1294, 1316
NmuCI	GTSAC	3 cut(s)	151, 203, 2107
NsbI	TGCGCA	1 cut(s)	194
NspI	RCATGY	3 cut(s)	1384, 2003, 2013
NspV	TTCGAA	2 cut(s)	785, 1133
PauI	GCGCGC	1 cut(s)	30
PciI	ACATGT	2 cut(s)	1380, 2009
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 782
PctI	GAATGC	3 cut(s)	531, 1465, 1531
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	8 cut(s)	596, 644, 896, 970, 1792, 2223, 2233, 2322
PfoI	TCCNGGA	1 cut(s)	1963
PkrI	GCNGC	8 cut(s)	23, 26, 29, 271, 280, 373, 411, 1918
PleI	GAGTC	3 cut(s)	1354, 1421, 1954
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
PpsI	GAGTC	3 cut(s)	1354, 1421, 1954
Ppu21I	YACGTR	1 cut(s)	203
PpuMI	RGGWCCY	1 cut(s)	1754
PscI	ACATGT	2 cut(s)	1380, 2009
PsiI	TTATAA	2 cut(s)	855, 1730
Psp5II	RGGWCCY	1 cut(s)	1754
Psp6I	CCWGG	1 cut(s)	1750
PspCI	CACGTG	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	1750
PspN4I	GGNNCC	2 cut(s)	1294, 1316
PspPI	GGNCC	2 cut(s)	1315, 1754
PspPPI	RGGWCCY	1 cut(s)	1754
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	2087
PsuI	RGATCY	1 cut(s)	1617
PteI	GCGCGC	1 cut(s)	30
PvuII	CAGCTG	2 cut(s)	24, 1895
RsaI	GTAC	1 cut(s)	1926
RsaNI	GTAC	1 cut(s)	1925
RseI	CAYNNNNRTG	3 cut(s)	747, 1491, 1641
SaqAI	TTAA	8 cut(s)	333, 384, 945, 1329, 1938, 2066, 2147, 2229
SatI	GCNGC	8 cut(s)	22, 25, 28, 270, 279, 372, 410, 1917
Sau96I	GGNCC	2 cut(s)	1315, 1754
SchI	GAGTC	3 cut(s)	1355, 1421, 1954
ScrFI	CCNGG	7 cut(s)	493, 494, 1752, 1965, 2208, 2209, 2240
SduI	GDGCHC	4 cut(s)	828, 1285, 1500, 1656
SfaNI	GCATC	7 cut(s)	591, 1009, 1060, 1160, 1958, 2043, 2302
SfcI	CTRYAG	2 cut(s)	672, 2047
SfuI	TTCGAA	2 cut(s)	785, 1133
SinI	GGWCC	2 cut(s)	1315, 1754
SmaI	CCCGGG	2 cut(s)	494, 2209
SmiMI	CAYNNNNRTG	3 cut(s)	747, 1491, 1641
SmlI	CTYRAG	3 cut(s)	182, 728, 1343
SmoI	CTYRAG	3 cut(s)	182, 728, 1343
SsiI	CCGC	8 cut(s)	28, 270, 279, 316, 372, 1553, 1592, 1997
SspMI	CTAG	5 cut(s)	503, 800, 1373, 1536, 1844
StyD4I	CCNGG	7 cut(s)	491, 492, 1750, 1963, 2206, 2207, 2238
StyI	CCWWGG	3 cut(s)	1318, 1642, 1690
TaaI	ACNGT	6 cut(s)	151, 544, 664, 1081, 1258, 2107
TaiI	ACGT	4 cut(s)	205, 252, 1887, 2127
TaqII	GACCGA	1 cut(s)	908
TauI	GCSGC	4 cut(s)	30, 272, 281, 374
TfiI	GAWTC	8 cut(s)	596, 644, 896, 970, 1792, 2223, 2233, 2322
Tru1I	TTAA	8 cut(s)	333, 384, 945, 1329, 1938, 2066, 2147, 2229
Tru9I	TTAA	8 cut(s)	333, 384, 945, 1329, 1938, 2066, 2147, 2229
TscAI	CASTG	2 cut(s)	681, 1012
TseFI	GTSAC	3 cut(s)	151, 203, 2107
TseI	GCWGC	4 cut(s)	21, 24, 409, 1916
Tsp45I	GTSAC	3 cut(s)	151, 203, 2107
TspDTI	ATGAA	5 cut(s)	704, 743, 1475, 2150, 2168
TspGWI	ACGGA	2 cut(s)	1211, 2355
TspMI	CCCGGG	2 cut(s)	492, 2207
TspRI	CASTG	2 cut(s)	681, 1012
VpaK11BI	GGWCC	2 cut(s)	1315, 1754
XapI	RAATTY	6 cut(s)	49, 445, 1235, 1724, 1948, 2270
XceI	RCATGY	3 cut(s)	1384, 2003, 2013
XmaI	CCCGGG	2 cut(s)	492, 2207
XmiI	GTMKAC	2 cut(s)	1090, 1887
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	5 cut(s)	503, 800, 1373, 1536, 1844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.