Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015212

Physical Location & Seq

Genomic Coordinates Reverse (-)

91891108 .. 91894133

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGATTAGCCGAAACATAAGTAGCTGCTCCTCCGCACACCGAGACCGCAACTTCTTCCTCAGCCTCCTCAAAAAGGCCACCACACTCTCTCTCCTCACCCAAACCCACGCCCAAGTCATCCTCAATGGCTACCAAAACGACATCGTCACCGTCACCAAGCTCACCCACAAGTTCTCCGACCTCAAGGCCATACGCCACGCGCGTGACCTCGTCTTCTCCTTCCCAAGGCCCGACCTTTTCCTCTTCAACGTCCTCATCAAGGGCTTCGCCACCAATGCCTCACCTTCATCTTCGATTTCTCTCTACACCCACCTCAGAAAAAGCACCACTCTTTGCCCTGATAAGTACACCTACGCTTTTGCCATCTCCGCCGCTTCGGGTTTTAGAGATGAGTTCTATGGGGTTCTGCTCCACGCGCACTCGCTTGTTGATGGGTTGGGGTCGAATTTGTACGTGGGTTCCATTTTGGTGGACTTCTACTTCAAGTTTTCAAGGGTTGAGATTGCGCAGAAGGTGTTCGACGAAATGCCTGAGAAGGATACTGTGCTGTGGAACACGATGGTCTCTGGGTTGGTGAGGAATTGTTACTATGTGGACGCGGTTCGGGTTTTTAGAGACATGGTTGTGGGTGGGAATGGTTTTGATTCCACTACTTTGGCTACATTGCTTCCTGCGGTGGCGGAGCTGCAGGAGCTGAAAGCGGGGATGTGGGTGCAGTGTTTGGCTGTGAAAGTTGGGTTTCATGATGATGTTCATGTGCTTACTGGGTTGGTTTCGTTGTATTCGAAATGCGGGGAGCTTGGGACGGCTAGGATGGTGTTTGGGATGATTGGTGAGCCGGATTTGGTGTGTTATAATGCCATGATTGCCGGGTATACTTGTAATGATGAGACAGTGTTGGCAGTTGGTCTTTTTAAGGAGTTGCTTGGTTATGGGGAGAAAGTGAATTCGAGCACAATTGTGGGGTTGGTTCCTGTGTCTTCTCCTTTTGGTCATCTGCAGCTCACTCGCTCCCTTCAAAGTTTCTGTGTGAAATCTGGCATTGTTTCTCATCCTTCTGTTTCGACTGCCTTAGTTACTGTTTACTGTAGACTGAATGAGATTGAGTCGGCAAGGCAGCTTTTTGATGAGTCTGCGAAGAGGACTTTGGCGTCTTGGAATGCCATGATCTCAGGGTATACCCAAAATGGGCTAACAGAGACTGCGATATCTCTTTTCCGGGAACTGATGTCTGAGTTCAGTCCAAATCCTGTTACAGTTACTACCATTCTTTCTGCCTGTGCTCAGCTTGGAGCTTTGAGTCTTGGGAAATGGGTTCATGGTTTGATTAAGAGCAAAAATCTTGAGTCTAACATCTATGTGTTGACTGCTCTAGTTGACATGTATGCAAAGTGTGGGAGCATTGTGAAAGCTAGGCAATTATTTGACTTGATGACTGAGAAAAATGTAGTCACTTGGAATGCCATGATATCTGGTTATGGCCTCCATGGTGATGGCCATGAAGCACTGAAACTCTTTAATGAGATGTTGGATTCTGGGATCCCCCCAAGCGGTGTTTCTTTTCTCTCGGTCTTGTATGCTTGCAGCCATGCTGGTTTGGTGAGAGAAGGAGATGAAATCTTCCATAAAATGGTTCATAACCATCAGTTTGTGCCAGTAGCTGAGCACTACGCCTGCATGGTTGACATCTTTGGCAGAGCTGGACAGTTAGAGAAGGCCTTGGAATTTATAAAGAAAATGCCAGTTAAGCCAGCATCTGCTGTTTGGGGAGCCTTGCTTGGTGCATGTAAGATACACAAAGACACTAAACTGGCACGTTTGGCTTCCGAAAAGCTACTTGAATTGGATCCAGATAATACAGGATATTATGTCTTGCTCTCTAATATATTATCAGCCGACGGGAACTTTCCAAAGGCTGCTTCAGTCCGGCAGGTAGCCAAGCATAGAAATTTGGCAAAGACTCCTGGATGCACTCTTGTTGAGATTGGTGACACCCCGCATGTCTTCACCTGTGGTGATCGTTCCCATCCTCAAGCAACAGAAATCTATAAGATGCTAGACAAGTTAACAGGAAAGATGAGGGAGGCTGGATTTCAAACTGAAACAGGAACTGCTTTGCATGATGTGGAGGAGGAAGAGAAGGAGCTAATGGTGAATGTTCATAGTGAGAAGTTGGCCATTGCTTTTGCCCTTATTTCTACTGCACCTGGAACAGAAATCAGAATCATCAAGAATCTACGGGTTTGTTTAGATTGCCATAATGCAACTAAATTTATATCCAAGATCACAGAGAGAGTTATTGTAGTTAGAGATGCTAACAGATTCCATCATTTTAAAGATGGTGTTTGTTCTTGTGGAGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

789

Amino Acids

86.92

Weight (kDa)

7.33

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	384 - 428	1.6e-07	PPR repeat family
PPR	PF01535	385 - 411	1.5e-06	PPR repeat
PPR_2	PF13041	481 - 529	1.7e-12	PPR repeat family
PPR_1	PF12854	482 - 509	5.1e-07	PPR repeat
PPR	PF01535	484 - 514	2.3e-10	PPR repeat
E_motif	PF20431	599 - 661	1.2e-13	E motif
Eplus_motif	PF20430	667 - 693	7.3e-07	E+ motif
DYW_deaminase	PF14432	697 - 789	2.1e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30700
fragaria_vesca	FvH4_1g00680 FvH4_1g00680
malus_domestica	MD02G1005500.v1.1
prunus_persica	Prupe.7G265500_v2.0.a1
pyrus_communis	pycom02g00440 pycom15g13410
rosa_chinensis	RchiOBHm_Chr2g0085291
rosa_laevigata	RLG00000015675
rosa_multiflora	Rmu_sc0008510.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155480
rosa_rugosa	Rorug01G0459300
rosa_samantha	Rh2BG008500 Rh2CG009200 Rh2DG009500
rosa_wichuraiana	Rw2G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	855, 1730
AasI	GACNNNNNNGTC	1 cut(s)	1150
Acc16I	TGCGCA	1 cut(s)	507
Acc36I	ACCTGC	1 cut(s)	1921
AccB7I	CCANNNNNTGG	1 cut(s)	1630
AccI	GTMKAC	3 cut(s)	875, 1090, 1178
AccII	CGCG	4 cut(s)	200, 202, 416, 599
AclWI	GGATC	4 cut(s)	1534, 1547, 1841, 1854
AcoI	YGGCCR	2 cut(s)	1495, 2175
AcsI	RAATTY	5 cut(s)	445, 946, 1724, 1948, 2270
AcuI	CTGAAG	1 cut(s)	1905
AcyI	GRCGYC	1 cut(s)	1151
AfaI	GTAC	2 cut(s)	347, 452
AfiI	CCNNNNNNNGG	6 cut(s)	73, 225, 259, 1188, 1550, 1630
AflIII	ACRYGT	1 cut(s)	1380
AgsI	TTSAA	6 cut(s)	247, 484, 492, 1019, 1841, 2096
AjnI	CCWGG	2 cut(s)	1963, 2206
AjuI	GAANNNNNNNTTGG	6 cut(s)	1130, 1162, 1540, 1572, 1903, 1935
AleI	CACNNNNGTG	2 cut(s)	201, 959
Alw21I	GWGCWC	3 cut(s)	956, 1285, 1668
Alw26I	GTCTC	6 cut(s)	36, 568, 609, 884, 1193, 2352
AlwI	GGATC	4 cut(s)	1534, 1547, 1841, 1854
AlwNI	CAGNNNCTG	5 cut(s)	694, 1202, 1661, 1757, 2111
AoxI	GGCC	7 cut(s)	75, 186, 227, 1480, 1495, 1716, 2175
ApeKI	GCWGC	6 cut(s)	24, 685, 1000, 1117, 1584, 1916
ApoI	RAATTY	5 cut(s)	445, 946, 1724, 1948, 2270
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	3 cut(s)	202, 418, 508
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	2 cut(s)	871, 1220
AsuII	TTCGAA	1 cut(s)	785
BalI	TGGCCA	2 cut(s)	1497, 2177
BamHI	GGATCC	2 cut(s)	1539, 1846
BbsI	GAAGAC	3 cut(s)	205, 972, 1996
Bbv12I	GWGCWC	3 cut(s)	956, 1285, 1668
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	6 cut(s)	11, 672, 1012, 1129, 1596, 1903
BccI	CCATC	9 cut(s)	371, 425, 553, 808, 1487, 1650, 2034, 2333, 2334
BceAI	ACGGC	1 cut(s)	822
BcgI	CGANNNNNNTGC	2 cut(s)	989, 1023
BciT130I	CCWGG	2 cut(s)	1965, 2208
BciVI	GTATCC	1 cut(s)	532
BcnI	CCSGG	2 cut(s)	871, 1220
BcoDI	GTCTC	6 cut(s)	36, 568, 609, 884, 1193, 2352
BfaI	CTAG	4 cut(s)	810, 1373, 1413, 2057
BfmI	CTRYAG	3 cut(s)	686, 998, 1087
BfuAI	ACCTGC	1 cut(s)	1921
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	7 cut(s)	25, 372, 686, 1001, 1118, 1585, 1917
BlpI	GCTNAGC	2 cut(s)	1284, 1662
BlsI	GCNGC	7 cut(s)	26, 373, 687, 1002, 1119, 1586, 1918
Bme1390I	CCNGG	4 cut(s)	871, 1220, 1965, 2208
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	5 cut(s)	460, 972, 1541, 1771, 1848
BmrFI	CCNGG	4 cut(s)	871, 1220, 1965, 2208
BmrI	ACTGGG	1 cut(s)	774
BmsI	GCATC	4 cut(s)	1763, 1958, 2043, 2302
BmuI	ACTGGG	1 cut(s)	774
BpiI	GAAGAC	3 cut(s)	205, 972, 1996
Bpu10I	CCTNAGC	1 cut(s)	59
Bpu1102I	GCTNAGC	2 cut(s)	1284, 1662
Bpu14I	TTCGAA	1 cut(s)	785
BpuEI	CTTGAG	3 cut(s)	167, 1364, 2016
BpuMI	CCSGG	2 cut(s)	871, 1220
BsaAI	YACGTR	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	1151
BsaI	GGTCTC	2 cut(s)	36, 568
BsaJI	CCNNGG	3 cut(s)	224, 1486, 1719
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 158, 188
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 225, 259, 1188, 1550, 1630
Bse1I	ACTGG	5 cut(s)	769, 1655, 1742, 1815, 2369
Bse3DI	GCAATG	2 cut(s)	662, 2178
BseBI	CCWGG	2 cut(s)	1965, 2208
BseDI	CCNNGG	3 cut(s)	224, 1486, 1719
BseGI	GGATG	7 cut(s)	117, 711, 819, 831, 1051, 1973, 2026
BseLI	CCNNNNNNNGG	6 cut(s)	73, 225, 259, 1188, 1550, 1630
BseMI	GCAATG	2 cut(s)	662, 2178
BseMII	CTCAG	8 cut(s)	73, 328, 522, 1185, 1224, 1298, 1428, 1653
BseNI	ACTGG	5 cut(s)	769, 1655, 1742, 1815, 2369
BseRI	GAGGAG	4 cut(s)	19, 56, 83, 2144
BseXI	GCAGC	6 cut(s)	11, 672, 1012, 1129, 1596, 1903
BsgI	GTGCAG	2 cut(s)	734, 2187
Bsh1236I	CGCG	4 cut(s)	200, 202, 416, 599
BshFI	GGCC	7 cut(s)	77, 188, 229, 1482, 1497, 1718, 2177
BsiHKAI	GWGCWC	3 cut(s)	956, 1285, 1668
BsiSI	CCGG	4 cut(s)	839, 870, 1219, 1927
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	6 cut(s)	73, 225, 259, 1188, 1550, 1630
BsmAI	GTCTC	6 cut(s)	36, 568, 609, 884, 1193, 2352
BsmFI	GGGAC	1 cut(s)	817
BsmI	GAATGC	2 cut(s)	1165, 1465
BsnI	GGCC	7 cut(s)	77, 188, 229, 1482, 1497, 1718, 2177
Bso31I	GGTCTC	2 cut(s)	36, 568
Bsp119I	TTCGAA	1 cut(s)	785
Bsp1286I	GDGCHC	3 cut(s)	956, 1285, 1668
Bsp143I	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
Bsp1720I	GCTNAGC	2 cut(s)	1284, 1662
Bsp19I	CCATGG	1 cut(s)	1486
BspANI	GGCC	7 cut(s)	77, 188, 229, 1482, 1497, 1718, 2177
BspCNI	CTCAG	8 cut(s)	72, 327, 523, 1184, 1225, 1297, 1429, 1654
BspFNI	CGCG	4 cut(s)	200, 202, 416, 599
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	5 cut(s)	460, 972, 1541, 1771, 1848
BspMAI	CTGCAG	2 cut(s)	690, 1002
BspMI	ACCTGC	1 cut(s)	1921
BspPI	GGATC	4 cut(s)	1534, 1547, 1841, 1854
BspT104I	TTCGAA	1 cut(s)	785
BspTNI	GGTCTC	2 cut(s)	36, 568
BsrDI	GCAATG	2 cut(s)	662, 2178
BsrI	ACTGG	5 cut(s)	769, 1655, 1742, 1815, 2369
BssECI	CCNNGG	3 cut(s)	224, 1486, 1719
BssMI	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
BssNAI	GTATAC	2 cut(s)	876, 1179
BssNI	GRCGYC	1 cut(s)	1151
BssT1I	CCWWGG	3 cut(s)	224, 1486, 1719
Bst1107I	GTATAC	2 cut(s)	876, 1179
Bst2UI	CCWGG	2 cut(s)	1965, 2208
Bst4CI	ACNGT	7 cut(s)	151, 544, 895, 1081, 1088, 1258, 1707
Bst6I	CTCTTC	3 cut(s)	248, 1133, 2130
BstACI	GRCGYC	1 cut(s)	1151
BstBAI	YACGTR	1 cut(s)	454
BstBI	TTCGAA	1 cut(s)	785
BstC8I	GCNNGC	3 cut(s)	1582, 1675, 1752
BstDEI	CTNAG	9 cut(s)	59, 314, 531, 1072, 1171, 1233, 1284, 1437, 1662
BstDSI	CCRYGG	1 cut(s)	1486
BstENI	CCTNNNNNAGG	3 cut(s)	71, 223, 257
BstF5I	GGATG	7 cut(s)	117, 711, 819, 831, 1051, 1973, 2026
BstFNI	CGCG	4 cut(s)	200, 202, 416, 599
BstHHI	GCGC	3 cut(s)	202, 418, 508
BstKTI	GATC	5 cut(s)	1170, 1542, 1849, 2020, 2286
BstMAI	GTCTC	6 cut(s)	36, 568, 609, 884, 1193, 2352
BstMBI	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
BstMWI	GCNNNNNNNGC	7 cut(s)	275, 368, 415, 691, 866, 1747, 1820
BstNI	CCWGG	2 cut(s)	1965, 2208
BstNSI	RCATGY	3 cut(s)	1384, 1788, 2003
BstSCI	CCNGG	4 cut(s)	869, 1218, 1963, 2206
BstSFI	CTRYAG	3 cut(s)	686, 998, 1087
BstUI	CGCG	4 cut(s)	200, 202, 416, 599
BstV1I	GCAGC	6 cut(s)	11, 672, 1012, 1129, 1596, 1903
BstV2I	GAAGAC	3 cut(s)	205, 972, 1996
BstX2I	RGATCY	2 cut(s)	1539, 1846
BstXI	CCANNNNNNTGG	3 cut(s)	469, 655, 1493
BstYI	RGATCY	2 cut(s)	1539, 1846
BstZ17I	GTATAC	2 cut(s)	876, 1179
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	7 cut(s)	77, 188, 229, 1482, 1497, 1718, 2177
BtgI	CCRYGG	1 cut(s)	1486
BtsCI	GGATG	7 cut(s)	117, 711, 819, 831, 1051, 1973, 2026
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	3 cut(s)	722, 900, 1505
BveI	ACCTGC	1 cut(s)	1921
Cac8I	GCNNGC	3 cut(s)	1582, 1675, 1752
CaiI	CAGNNNCTG	5 cut(s)	694, 1202, 1661, 1757, 2111
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	3 cut(s)	202, 418, 508
Cfr13I	GGNCC	1 cut(s)	228
CseI	GACGC	2 cut(s)	605, 1140
Csp6I	GTAC	2 cut(s)	346, 451
CviQI	GTAC	2 cut(s)	346, 451
DdeI	CTNAG	9 cut(s)	59, 314, 531, 1072, 1171, 1233, 1284, 1437, 1662
DpnI	GATC	5 cut(s)	1169, 1541, 1848, 2019, 2285
DpnII	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
DraI	TTTAAA	1 cut(s)	2335
DrdI	GACNNNNNNGTC	1 cut(s)	1150
DseDI	GACNNNNNNGTC	1 cut(s)	1150
EaeI	YGGCCR	2 cut(s)	1495, 2175
Eam1104I	CTCTTC	3 cut(s)	248, 1133, 2130
EarI	CTCTTC	3 cut(s)	248, 1133, 2130
EciI	GGCGGA	2 cut(s)	358, 695
Eco130I	CCWWGG	3 cut(s)	224, 1486, 1719
Eco147I	AGGCCT	1 cut(s)	1718
Eco31I	GGTCTC	2 cut(s)	36, 568
Eco32I	GATATC	2 cut(s)	1209, 1470
Eco57I	CTGAAG	1 cut(s)	1905
EcoNI	CCTNNNNNAGG	3 cut(s)	71, 223, 257
EcoRI	GAATTC	1 cut(s)	946
EcoRII	CCWGG	2 cut(s)	1963, 2206
EcoRV	GATATC	2 cut(s)	1209, 1470
EcoT14I	CCWWGG	3 cut(s)	224, 1486, 1719
ErhI	CCWWGG	3 cut(s)	224, 1486, 1719
FaqI	GGGAC	1 cut(s)	817
FauI	CCCGC	3 cut(s)	694, 785, 2004
FblI	GTMKAC	3 cut(s)	875, 1090, 1178
Fnu4HI	GCNGC	7 cut(s)	25, 372, 686, 1001, 1118, 1585, 1917
FokI	GGATG	7 cut(s)	104, 718, 826, 838, 1038, 1980, 2013
Fsp4HI	GCNGC	7 cut(s)	25, 372, 686, 1001, 1118, 1585, 1917
FspBI	CTAG	4 cut(s)	810, 1373, 1413, 2057
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	3 cut(s)	201, 417, 507
GluI	GCNGC	7 cut(s)	25, 372, 686, 1001, 1118, 1585, 1917
HaeIII	GGCC	7 cut(s)	77, 188, 229, 1482, 1497, 1718, 2177
HapII	CCGG	4 cut(s)	839, 870, 1219, 1927
HgaI	GACGC	2 cut(s)	605, 1140
HhaI	GCGC	3 cut(s)	202, 418, 508
Hin1I	GRCGYC	1 cut(s)	1151
Hin6I	GCGC	3 cut(s)	200, 416, 506
HinP1I	GCGC	3 cut(s)	200, 416, 506
HincII	GTYRAC	4 cut(s)	1365, 1378, 1684, 2067
HindII	GTYRAC	4 cut(s)	1365, 1378, 1684, 2067
HpaI	GTTAAC	1 cut(s)	2067
HpaII	CCGG	4 cut(s)	839, 870, 1219, 1927
Hpy188I	TCNGA	5 cut(s)	178, 317, 1234, 1828, 2222
Hpy188III	TCNNGA	4 cut(s)	743, 1343, 1850, 2230
Hpy99I	CGWCG	2 cut(s)	524, 1901
HpyAV	CCTTC	9 cut(s)	229, 294, 505, 529, 1025, 1065, 1601, 1708, 2134
HpyCH4III	ACNGT	7 cut(s)	151, 544, 895, 1081, 1088, 1258, 1707
HpyCH4IV	ACGT	3 cut(s)	249, 453, 1816
HpyF10VI	GCNNNNNNNGC	7 cut(s)	275, 368, 415, 691, 866, 1747, 1820
HpyF3I	CTNAG	9 cut(s)	59, 314, 531, 1072, 1171, 1233, 1284, 1437, 1662
HpySE526I	ACGT	3 cut(s)	249, 453, 1816
Hsp92I	GRCGYC	1 cut(s)	1151
HspAI	GCGC	3 cut(s)	200, 416, 506
KspAI	GTTAAC	1 cut(s)	2067
Kzo9I	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
Lsp1109I	GCAGC	6 cut(s)	11, 672, 1012, 1129, 1596, 1903
LweI	GCATC	4 cut(s)	1763, 1958, 2043, 2302
MaeI	CTAG	4 cut(s)	810, 1373, 1413, 2057
MaeII	ACGT	3 cut(s)	249, 453, 1816
MaeIII	GTNAC	9 cut(s)	145, 151, 203, 584, 1075, 1252, 1258, 1450, 1988
MalI	GATC	5 cut(s)	1169, 1541, 1848, 2019, 2285
MboI	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
MboII	GAAGA	9 cut(s)	46, 205, 235, 282, 972, 1150, 1612, 1996, 2147
MfeI	CAATTG	1 cut(s)	957
MflI	RGATCY	2 cut(s)	1539, 1846
MhlI	GDGCHC	3 cut(s)	956, 1285, 1668
MlsI	TGGCCA	2 cut(s)	1497, 2177
MluCI	AATT	9 cut(s)	445, 580, 946, 957, 1418, 1724, 1841, 1948, 2270
MluNI	TGGCCA	2 cut(s)	1497, 2177
MlyI	GAGTC	5 cut(s)	1115, 1139, 1309, 1355, 1954
MmeI	TCCRAC	2 cut(s)	201, 1509
Mox20I	TGGCCA	2 cut(s)	1497, 2177
MroXI	GAANNNNTTC	1 cut(s)	515
MscI	TGGCCA	2 cut(s)	1497, 2177
MseI	TTAA	6 cut(s)	915, 1329, 1518, 1746, 2066, 2334
MslI	CAYNNNNRTG	7 cut(s)	201, 467, 623, 747, 959, 1358, 1491
Msp20I	TGGCCA	2 cut(s)	1497, 2177
MspI	CCGG	4 cut(s)	839, 870, 1219, 1927
MspR9I	CCNGG	4 cut(s)	871, 1220, 1965, 2208
MunI	CAATTG	1 cut(s)	957
Mva1269I	GAATGC	2 cut(s)	1165, 1465
MvaI	CCWGG	2 cut(s)	1965, 2208
MvnI	CGCG	4 cut(s)	200, 202, 416, 599
MwoI	GCNNNNNNNGC	7 cut(s)	275, 368, 415, 691, 866, 1747, 1820
NciI	CCSGG	2 cut(s)	871, 1220
NcoI	CCATGG	1 cut(s)	1486
NdeII	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
NlaIV	GGNNCC	5 cut(s)	460, 972, 1541, 1771, 1848
NmuCI	GTSAC	5 cut(s)	145, 151, 203, 1450, 1988
NsbI	TGCGCA	1 cut(s)	507
NspI	RCATGY	3 cut(s)	1384, 1788, 2003
NspV	TTCGAA	1 cut(s)	785
OliI	CACNNNNGTG	2 cut(s)	201, 959
PagI	TCATGA	1 cut(s)	742
PceI	AGGCCT	1 cut(s)	1718
PciI	ACATGT	1 cut(s)	1380
PcsI	WCGNNNNNNNCGW	2 cut(s)	199, 782
PctI	GAATGC	2 cut(s)	1165, 1465
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	5 cut(s)	644, 1532, 2223, 2233, 2322
PflFI	GACNNNGTC	2 cut(s)	143, 209
PflMI	CCANNNNNTGG	1 cut(s)	1630
PfoI	TCCNGGA	2 cut(s)	1218, 1963
PkrI	GCNGC	7 cut(s)	26, 373, 687, 1002, 1119, 1586, 1918
PleI	GAGTC	5 cut(s)	1114, 1138, 1308, 1354, 1954
PpsI	GAGTC	5 cut(s)	1114, 1138, 1308, 1354, 1954
Ppu21I	YACGTR	1 cut(s)	454
PscI	ACATGT	1 cut(s)	1380
PsiI	TTATAA	2 cut(s)	855, 1730
Psp6I	CCWGG	2 cut(s)	1963, 2206
PspGI	CCWGG	2 cut(s)	1963, 2206
PspN4I	GGNNCC	5 cut(s)	460, 972, 1541, 1771, 1848
PspPI	GGNCC	1 cut(s)	228
PstI	CTGCAG	2 cut(s)	690, 1002
PstNI	CAGNNNCTG	5 cut(s)	694, 1202, 1661, 1757, 2111
PsuI	RGATCY	2 cut(s)	1539, 1846
PsyI	GACNNNGTC	2 cut(s)	143, 209
RsaI	GTAC	2 cut(s)	347, 452
RsaNI	GTAC	2 cut(s)	346, 451
RseI	CAYNNNNRTG	7 cut(s)	201, 467, 623, 747, 959, 1358, 1491
SaqAI	TTAA	6 cut(s)	915, 1329, 1518, 1746, 2066, 2334
SatI	GCNGC	7 cut(s)	25, 372, 686, 1001, 1118, 1585, 1917
Sau3AI	GATC	5 cut(s)	1167, 1539, 1846, 2017, 2283
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	5 cut(s)	1115, 1139, 1309, 1355, 1954
ScrFI	CCNGG	4 cut(s)	871, 1220, 1965, 2208
SduI	GDGCHC	3 cut(s)	956, 1285, 1668
SfaNI	GCATC	4 cut(s)	1763, 1958, 2043, 2302
SfcI	CTRYAG	3 cut(s)	686, 998, 1087
SfuI	TTCGAA	1 cut(s)	785
SmiMI	CAYNNNNRTG	7 cut(s)	201, 467, 623, 747, 959, 1358, 1491
SmlI	CTYRAG	3 cut(s)	182, 1343, 2031
SmoI	CTYRAG	3 cut(s)	182, 1343, 2031
Sse9I	AATT	9 cut(s)	445, 580, 946, 957, 1418, 1724, 1841, 1948, 2270
SseBI	AGGCCT	1 cut(s)	1718
SspMI	CTAG	4 cut(s)	810, 1373, 1413, 2057
StuI	AGGCCT	1 cut(s)	1718
StyD4I	CCNGG	4 cut(s)	869, 1218, 1963, 2206
StyI	CCWWGG	3 cut(s)	224, 1486, 1719
TaaI	ACNGT	7 cut(s)	151, 544, 895, 1081, 1088, 1258, 1707
TaiI	ACGT	3 cut(s)	252, 456, 1819
TaqI	TCGA	6 cut(s)	293, 443, 519, 785, 950, 1064
TaqII	GACCGA	1 cut(s)	1558
TasI	AATT	9 cut(s)	445, 580, 946, 957, 1418, 1724, 1841, 1948, 2270
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	5 cut(s)	644, 1532, 2223, 2233, 2322
Tru1I	TTAA	6 cut(s)	915, 1329, 1518, 1746, 2066, 2334
Tru9I	TTAA	6 cut(s)	915, 1329, 1518, 1746, 2066, 2334
TscAI	CASTG	3 cut(s)	722, 900, 1512
TseFI	GTSAC	5 cut(s)	145, 151, 203, 1450, 1988
TseI	GCWGC	6 cut(s)	24, 685, 1000, 1117, 1584, 1916
Tsp45I	GTSAC	5 cut(s)	145, 151, 203, 1450, 1988
TspDTI	ATGAA	8 cut(s)	276, 731, 743, 1307, 1515, 1625, 1629, 2150
TspRI	CASTG	3 cut(s)	722, 900, 1512
Tth111I	GACNNNGTC	2 cut(s)	143, 209
Van91I	CCANNNNNTGG	1 cut(s)	1630
XagI	CCTNNNNNAGG	3 cut(s)	71, 223, 257
XapI	RAATTY	5 cut(s)	445, 946, 1724, 1948, 2270
XceI	RCATGY	3 cut(s)	1384, 1788, 2003
XmiI	GTMKAC	3 cut(s)	875, 1090, 1178
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	4 cut(s)	810, 1373, 1413, 2057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.