Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015212

Physical Location & Seq

Genomic Coordinates Forward (+)

559273 .. 563467

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG009500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGAGAGTCTACGAAACAATCACAAAACTCATGATTAGCCGAAACATAAGTAGCTGCTCCTCCGCGCACCGAGACCGGAACTTCTTCCTCGGCCTCCTCAAAAAGGCCACCACACTCTCTCTCCTCACCCAAACCCACGCCCAAATCATCCTCAACGGCTACCAAAACGACGTCGTCACCGTCACCAAGCTCACCCACAAGTTCTCCGACCTCAAGGCCATACGCCACGCACGTGACCTCGTCTTCTCCTTCCCAAGACCCGACCTTTTCCTCTTCAACGTCCTCATCAAAGGCTTCGCCACCAATGCCTCACCTTGGTCTTCGATTTCTCTCTACACCCACCTCAGAAAAAGCACCACTGTTTGCCCTGATAAGTACACCTACGCTTTTGCCATCTCCGCCGCTTCGGGTTTTAGAGATGAGTTGTATGGGGTTCTGCTCCACGCGCACTCGGTTGTTGATGGGTTGGGGTCGAATTTGTACGTGGGTTCCATTTTGGTCGACTTTTACTTCAAGTTTTCGAGGGTTGGGATTGCGCAGAAGGTGTTCGACGAAATGCCTGAGAAGGATACTGTGCTGTGGAACACGATGGTTTCTGGGTTGGTGAGGAATTGTTACTATGCGGACGCGGTTCGCGTTTTTAGAGACATGGTTGTGGGTGGGAATGGTTTTGATTCGACAACTTTGGCTACATTGCTTCCTGCCGTGGCGGAGCTGCAGGAGCTGAATGCAGGGATGTGGGTGCAGTGTTTGGCTGTGAAAGTTGGGTTTCATGATGATGTTCATGTGCTGACTGGGTTGGTTTCGTTGTATTCGAAATGCGGGGAGCTTGGGACGGCTAGGATGGTGTTTGGGATGATTGGTGAGCCGGATTTGGTGTGTTATAATGCGATGATTGCTGGGTATACTTGTAATGATGAGACAGTGTTGGCAGTTGGTCTTTTTAAGGAGTTGCTTGGTTATGGGGAGAAAGTTAATTCGAGCACAATTGTGGGGTTGGTTCCTGTGTCTTCTCCTTTTGGTCATCTGCAGCTCACTCGCTCTCTTCAAAGTTTCTGTGTGAAATCTGGCATTGTTTCGCATCCTTCTGTTTCGACTGCCTTAGTTACTGTTTACTGTAGACTGAATGAGATTGAGTCGGCAAGGCAGCTTTTTGATGAGTCTGCGAAGAGAACTTTGGCGTCTTGGAATGCCATGATCTCAGGGTATACCCAAAATGGGCTAACAGAGACTGCGATATCTCTTTTCCGGGAAATGATGTCTGAGTTCAGTCCAAATCCTGTTACGGTTACTACCATTCTTTCTGCCTGTGCTCAGCTTGGAGCTTTGAGTCTTGGGAAATGGGTTCATGGTTTGATTAAGAGCAAAAATCTTGAGTCTAACATCTATGTGTTGACTGCTCTAGTTGACATGTATGCAAAGTGTGGGAGCATTGCGGAAGCTAGGCAATTATTTGACTTGATGACTGAGAAAAATGTAGTCACTTGGAATGCCATGATATCTGGTTATGGCCTCCATGGTGATGGCCATGAAGCACTGAAACTCTTTAATGAGATGTTGGATTCTGGGATCCCCCCAAGCAGCGTTTCTTTTCTCTCTGTCTTGTATGCTTGCAGTCATGCTGGTTTGGTGAGAGAAGGAGATGAAATCTTCCATAAAATGGTTCATAACCATCAGTTTGTGCCCGTAGCTGAGCACTATGCCTGCATGGTTGACATCTTTGGCAGAGCAGGAGAGTTAGAGAAGGCCTTGGAATTTATAAAGAAAATGCCGGTTGAGCCAGGATCTGCTGTTTGGGGAGCCTTGCTTGGTGCATGTAAGATACACAAAGACACTAAACTGGCACGTTTGGCTTCCGAAAAGCTACTTGAATTGGATCCAGATAATACAGGATATTATGTCTTACTCTCTAATATATTATCAGCCGACGGGAACTTTCCAAAGGCTGCTTCAGTCCGGCAGGTAGCCAAGCATAGAAATTTGGCAAAGACTCCTGGATGCACTCTTGTTGAGATTGGTGACACCCCACATGTCTTCACCTGTGGTGATCGTTCCCATCCTCAAGCAACAGAAATCTATAAGATGCTAGACAAGTTAACAGGAAAGATGAGGGAGACTGGATTTCAAACTGAAACAGGAACTGCTTTGCATGATGTGGAGGAGGAAGAGAAGGAGTTAATGGTGAATGTTCATAGTGAGAAGTTGGCCATTGCTTTTGCCCTTATTTCTACTGCACCTGGAACAGAAATCAGAATCATCAAGAATCTACGGGTTTGTTTAGATTGCCATAATGCAACTAAATTTATATCCAAGATCACAGAGAGAGTTATTGTAGTTAGAGATGCTAACAGATTCCATCATTTTAAAGACGGTGTTTGTTCTTGTGGAGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

799

Amino Acids

88.09

Weight (kDa)

6.73

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	189 - 235	5.8e-06	PPR repeat family
PPR_2	PF13041	394 - 438	4.2e-09	PPR repeat family
PPR	PF01535	395 - 421	6.3e-08	PPR repeat
PPR_2	PF13041	491 - 539	2.8e-13	PPR repeat family
PPR_1	PF12854	492 - 519	5.1e-07	PPR repeat
PPR	PF01535	494 - 524	2.4e-10	PPR repeat
E_motif	PF20431	609 - 671	1.2e-13	E motif
Eplus_motif	PF20430	677 - 703	7.4e-07	E+ motif
DYW_deaminase	PF14432	707 - 799	2.2e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30700
fragaria_vesca	FvH4_1g00680 FvH4_1g00680
malus_domestica	MD02G1005500.v1.1
prunus_persica	Prupe.7G265500_v2.0.a1
pyrus_communis	pycom02g00440 pycom15g13410
rosa_chinensis	RchiOBHm_Chr2g0085291
rosa_laevigata	RLG00000015675
rosa_multiflora	Rmu_sc0008510.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155480
rosa_rugosa	Rorug01G0459300
rosa_samantha	Rh2BG008500 Rh2CG009200 Rh2DG009500
rosa_wichuraiana	Rw2G000730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	885, 1760
AatII	GACGTC	1 cut(s)	174
Acc16I	TGCGCA	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	1951
AccB7I	CCANNNNNTGG	1 cut(s)	1660
AccI	GTMKAC	5 cut(s)	9, 501, 905, 1120, 1208
AccII	CGCG	4 cut(s)	65, 446, 629, 636
AciI	CCGC	8 cut(s)	63, 399, 402, 623, 629, 710, 822, 1436
AclWI	GGATC	5 cut(s)	1564, 1577, 1792, 1871, 1884
AcoI	YGGCCR	2 cut(s)	1525, 2205
AcsI	RAATTY	4 cut(s)	475, 1754, 1978, 2300
AcuI	CTGAAG	1 cut(s)	1935
AcvI	CACGTG	1 cut(s)	233
AcyI	GRCGYC	2 cut(s)	171, 1181
AfaI	GTAC	2 cut(s)	377, 482
AfiI	CCNNNNNNNGG	4 cut(s)	103, 315, 1218, 1660
AflIII	ACRYGT	2 cut(s)	1410, 2029
AgsI	TTSAA	5 cut(s)	277, 514, 1049, 1871, 2126
AjnI	CCWGG	3 cut(s)	1780, 1993, 2236
AjuI	GAANNNNNNNTTGG	6 cut(s)	1160, 1192, 1570, 1602, 1933, 1965
AleI	CACNNNNGTG	2 cut(s)	231, 989
Alw21I	GWGCWC	3 cut(s)	986, 1315, 1698
Alw26I	GTCTC	6 cut(s)	66, 639, 914, 1223, 2108, 2382
AlwI	GGATC	5 cut(s)	1564, 1577, 1792, 1871, 1884
AlwNI	CAGNNNCTG	4 cut(s)	724, 1232, 1787, 2141
AoxI	GGCC	7 cut(s)	91, 105, 216, 1510, 1525, 1746, 2205
ApeKI	GCWGC	6 cut(s)	54, 715, 1030, 1147, 1581, 1946
ApoI	RAATTY	4 cut(s)	475, 1754, 1978, 2300
Asp700I	GAANNNNTTC	2 cut(s)	83, 545
AspLEI	GCGC	3 cut(s)	67, 448, 538
AsuC2I	CCSGG	1 cut(s)	1250
AsuII	TTCGAA	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	1686
BalI	TGGCCA	2 cut(s)	1527, 2207
BamHI	GGATCC	2 cut(s)	1569, 1876
BbrPI	CACGTG	1 cut(s)	233
BbsI	GAAGAC	4 cut(s)	235, 312, 1002, 2026
Bbv12I	GWGCWC	3 cut(s)	986, 1315, 1698
BbvI	GCAGC	6 cut(s)	41, 702, 1042, 1159, 1593, 1933
BccI	CCATC	8 cut(s)	401, 455, 583, 838, 1517, 1680, 2064, 2364
BceAI	ACGGC	3 cut(s)	172, 689, 852
BcgI	CGANNNNNNTGC	2 cut(s)	1019, 1053
BciT130I	CCWGG	3 cut(s)	1782, 1995, 2238
BciVI	GTATCC	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	1250
BcoDI	GTCTC	6 cut(s)	66, 639, 914, 1223, 2108, 2382
BfaI	CTAG	4 cut(s)	840, 1403, 1443, 2087
BfmI	CTRYAG	3 cut(s)	716, 1028, 1117
BfuAI	ACCTGC	1 cut(s)	1951
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	7 cut(s)	55, 402, 716, 1031, 1148, 1582, 1947
BlpI	GCTNAGC	2 cut(s)	1314, 1692
BlsI	GCNGC	7 cut(s)	56, 403, 717, 1032, 1149, 1583, 1948
Bme1390I	CCNGG	4 cut(s)	1250, 1782, 1995, 2238
BmiI	GGNNCC	5 cut(s)	490, 1002, 1571, 1801, 1878
BmrFI	CCNGG	4 cut(s)	1250, 1782, 1995, 2238
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	4 cut(s)	1090, 1988, 2073, 2332
BmuI	ACTGGG	1 cut(s)	804
BpiI	GAAGAC	4 cut(s)	235, 312, 1002, 2026
Bpu1102I	GCTNAGC	2 cut(s)	1314, 1692
Bpu14I	TTCGAA	1 cut(s)	815
BpuEI	CTTGAG	3 cut(s)	197, 1394, 2046
BpuMI	CCSGG	1 cut(s)	1250
BsaAI	YACGTR	2 cut(s)	233, 484
BsaHI	GRCGYC	2 cut(s)	171, 1181
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	88, 314, 705, 1516, 1749
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 188, 218
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 315, 1218, 1660
Bse118I	RCCGGY	1 cut(s)	1771
Bse1I	ACTGG	4 cut(s)	799, 1845, 2122, 2399
Bse3DI	GCAATG	3 cut(s)	692, 1431, 2208
BseBI	CCWGG	3 cut(s)	1782, 1995, 2238
BseDI	CCNNGG	5 cut(s)	88, 314, 705, 1516, 1749
BseGI	GGATG	7 cut(s)	147, 741, 849, 861, 1081, 2003, 2056
BseLI	CCNNNNNNNGG	4 cut(s)	103, 315, 1218, 1660
BseMI	GCAATG	3 cut(s)	692, 1431, 2208
BseMII	CTCAG	7 cut(s)	358, 552, 1215, 1254, 1328, 1458, 1683
BseNI	ACTGG	4 cut(s)	799, 1845, 2122, 2399
BseRI	GAGGAG	4 cut(s)	49, 86, 113, 2174
BseSI	GKGCMC	1 cut(s)	1686
BseXI	GCAGC	6 cut(s)	41, 702, 1042, 1159, 1593, 1933
BseYI	CCCAGC	1 cut(s)	899
BsgI	GTGCAG	2 cut(s)	764, 2217
Bsh1236I	CGCG	4 cut(s)	65, 446, 629, 636
BshFI	GGCC	7 cut(s)	93, 107, 218, 1512, 1527, 1748, 2207
BsiHKAI	GWGCWC	3 cut(s)	986, 1315, 1698
BsiSI	CCGG	5 cut(s)	76, 869, 1249, 1772, 1957
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	4 cut(s)	103, 315, 1218, 1660
BsmAI	GTCTC	6 cut(s)	66, 639, 914, 1223, 2108, 2382
BsmFI	GGGAC	1 cut(s)	847
BsmI	GAATGC	3 cut(s)	733, 1195, 1495
BsnI	GGCC	7 cut(s)	93, 107, 218, 1512, 1527, 1748, 2207
Bso31I	GGTCTC	1 cut(s)	66
Bsp119I	TTCGAA	1 cut(s)	815
Bsp1286I	GDGCHC	4 cut(s)	986, 1315, 1686, 1698
Bsp143I	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
Bsp1720I	GCTNAGC	2 cut(s)	1314, 1692
Bsp19I	CCATGG	1 cut(s)	1516
BspACI	CCGC	8 cut(s)	63, 399, 402, 623, 629, 710, 822, 1436
BspANI	GGCC	7 cut(s)	93, 107, 218, 1512, 1527, 1748, 2207
BspCNI	CTCAG	7 cut(s)	357, 553, 1214, 1255, 1327, 1459, 1684
BspFNI	CGCG	4 cut(s)	65, 446, 629, 636
BspHI	TCATGA	2 cut(s)	30, 772
BspLI	GGNNCC	5 cut(s)	490, 1002, 1571, 1801, 1878
BspMAI	CTGCAG	2 cut(s)	720, 1032
BspMI	ACCTGC	1 cut(s)	1951
BspPI	GGATC	5 cut(s)	1564, 1577, 1792, 1871, 1884
BspT104I	TTCGAA	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	3 cut(s)	692, 1431, 2208
BsrFI	RCCGGY	1 cut(s)	1771
BsrI	ACTGG	4 cut(s)	799, 1845, 2122, 2399
BssAI	RCCGGY	1 cut(s)	1771
BssECI	CCNNGG	5 cut(s)	88, 314, 705, 1516, 1749
BssMI	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
BssNAI	GTATAC	2 cut(s)	906, 1209
BssNI	GRCGYC	2 cut(s)	171, 1181
BssT1I	CCWWGG	3 cut(s)	314, 1516, 1749
Bst1107I	GTATAC	2 cut(s)	906, 1209
Bst2UI	CCWGG	3 cut(s)	1782, 1995, 2238
Bst4CI	ACNGT	8 cut(s)	181, 361, 574, 925, 1111, 1118, 1288, 2372
Bst6I	CTCTTC	4 cut(s)	278, 1050, 1163, 2160
BstACI	GRCGYC	2 cut(s)	171, 1181
BstBAI	YACGTR	2 cut(s)	233, 484
BstBI	TTCGAA	1 cut(s)	815
BstC8I	GCNNGC	2 cut(s)	1612, 1705
BstDEI	CTNAG	8 cut(s)	344, 561, 1102, 1201, 1263, 1314, 1467, 1692
BstDSI	CCRYGG	2 cut(s)	705, 1516
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	7 cut(s)	147, 741, 849, 861, 1081, 2003, 2056
BstFNI	CGCG	4 cut(s)	65, 446, 629, 636
BstHHI	GCGC	3 cut(s)	67, 448, 538
BstKTI	GATC	6 cut(s)	1200, 1572, 1787, 1879, 2050, 2316
BstMAI	GTCTC	6 cut(s)	66, 639, 914, 1223, 2108, 2382
BstMBI	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
BstMWI	GCNNNNNNNGC	7 cut(s)	305, 398, 445, 721, 896, 1777, 1850
BstNI	CCWGG	3 cut(s)	1782, 1995, 2238
BstNSI	RCATGY	3 cut(s)	1414, 1818, 2033
BstSCI	CCNGG	4 cut(s)	1248, 1780, 1993, 2236
BstSFI	CTRYAG	3 cut(s)	716, 1028, 1117
BstSLI	GKGCMC	1 cut(s)	1686
BstUI	CGCG	4 cut(s)	65, 446, 629, 636
BstV1I	GCAGC	6 cut(s)	41, 702, 1042, 1159, 1593, 1933
BstV2I	GAAGAC	4 cut(s)	235, 312, 1002, 2026
BstX2I	RGATCY	3 cut(s)	1569, 1784, 1876
BstXI	CCANNNNNNTGG	1 cut(s)	1523
BstYI	RGATCY	3 cut(s)	1569, 1784, 1876
BstZ17I	GTATAC	2 cut(s)	906, 1209
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	7 cut(s)	93, 107, 218, 1512, 1527, 1748, 2207
BtgI	CCRYGG	2 cut(s)	705, 1516
BtgZI	GCGATG	1 cut(s)	905
BtsCI	GGATG	7 cut(s)	147, 741, 849, 861, 1081, 2003, 2056
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	4 cut(s)	357, 752, 930, 1535
BveI	ACCTGC	1 cut(s)	1951
Cac8I	GCNNGC	2 cut(s)	1612, 1705
CaiI	CAGNNNCTG	4 cut(s)	724, 1232, 1787, 2141
CciI	TCATGA	2 cut(s)	30, 772
CfoI	GCGC	3 cut(s)	67, 448, 538
Cfr10I	RCCGGY	1 cut(s)	1771
CseI	GACGC	2 cut(s)	635, 1170
Csp6I	GTAC	2 cut(s)	376, 481
CviQI	GTAC	2 cut(s)	376, 481
DdeI	CTNAG	8 cut(s)	344, 561, 1102, 1201, 1263, 1314, 1467, 1692
DpnI	GATC	6 cut(s)	1199, 1571, 1786, 1878, 2049, 2315
DpnII	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
DraI	TTTAAA	1 cut(s)	2365
EaeI	YGGCCR	2 cut(s)	1525, 2205
Eam1104I	CTCTTC	4 cut(s)	278, 1050, 1163, 2160
EarI	CTCTTC	4 cut(s)	278, 1050, 1163, 2160
EciI	GGCGGA	2 cut(s)	388, 725
Eco130I	CCWWGG	3 cut(s)	314, 1516, 1749
Eco147I	AGGCCT	1 cut(s)	1748
Eco31I	GGTCTC	1 cut(s)	66
Eco32I	GATATC	2 cut(s)	1239, 1500
Eco57I	CTGAAG	1 cut(s)	1935
Eco72I	CACGTG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	3 cut(s)	1780, 1993, 2236
EcoRV	GATATC	2 cut(s)	1239, 1500
EcoT14I	CCWWGG	3 cut(s)	314, 1516, 1749
ErhI	CCWWGG	3 cut(s)	314, 1516, 1749
FaqI	GGGAC	1 cut(s)	847
FauI	CCCGC	1 cut(s)	815
FblI	GTMKAC	5 cut(s)	9, 501, 905, 1120, 1208
Fnu4HI	GCNGC	7 cut(s)	55, 402, 716, 1031, 1148, 1582, 1947
FokI	GGATG	7 cut(s)	134, 748, 856, 868, 1068, 2010, 2043
Fsp4HI	GCNGC	7 cut(s)	55, 402, 716, 1031, 1148, 1582, 1947
FspBI	CTAG	4 cut(s)	840, 1403, 1443, 2087
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	3 cut(s)	66, 447, 537
GluI	GCNGC	7 cut(s)	55, 402, 716, 1031, 1148, 1582, 1947
GsaI	CCCAGC	1 cut(s)	903
HaeIII	GGCC	7 cut(s)	93, 107, 218, 1512, 1527, 1748, 2207
HapII	CCGG	5 cut(s)	76, 869, 1249, 1772, 1957
HgaI	GACGC	2 cut(s)	635, 1170
HhaI	GCGC	3 cut(s)	67, 448, 538
Hin1I	GRCGYC	2 cut(s)	171, 1181
Hin6I	GCGC	3 cut(s)	65, 446, 536
HinP1I	GCGC	3 cut(s)	65, 446, 536
HincII	GTYRAC	5 cut(s)	502, 1395, 1408, 1714, 2097
HindII	GTYRAC	5 cut(s)	502, 1395, 1408, 1714, 2097
HpaI	GTTAAC	1 cut(s)	2097
HpaII	CCGG	5 cut(s)	76, 869, 1249, 1772, 1957
Hpy188I	TCNGA	5 cut(s)	208, 347, 1264, 1858, 2252
Hpy188III	TCNNGA	5 cut(s)	31, 773, 1373, 1880, 2260
Hpy99I	CGWCG	4 cut(s)	173, 176, 554, 1931
HpyAV	CCTTC	7 cut(s)	259, 535, 559, 1095, 1631, 1738, 2164
HpyCH4III	ACNGT	8 cut(s)	181, 361, 574, 925, 1111, 1118, 1288, 2372
HpyCH4IV	ACGT	5 cut(s)	171, 232, 279, 483, 1846
HpyF10VI	GCNNNNNNNGC	7 cut(s)	305, 398, 445, 721, 896, 1777, 1850
HpyF3I	CTNAG	8 cut(s)	344, 561, 1102, 1201, 1263, 1314, 1467, 1692
HpySE526I	ACGT	5 cut(s)	171, 232, 279, 483, 1846
Hsp92I	GRCGYC	2 cut(s)	171, 1181
HspAI	GCGC	3 cut(s)	65, 446, 536
KspAI	GTTAAC	1 cut(s)	2097
Kzo9I	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
LmnI	GCTCC	8 cut(s)	62, 444, 712, 721, 826, 1322, 1428, 1799
Lsp1109I	GCAGC	6 cut(s)	41, 702, 1042, 1159, 1593, 1933
LweI	GCATC	4 cut(s)	1090, 1988, 2073, 2332
MaeI	CTAG	4 cut(s)	840, 1403, 1443, 2087
MaeII	ACGT	5 cut(s)	171, 232, 279, 483, 1846
MaeIII	GTNAC	9 cut(s)	175, 181, 233, 614, 1105, 1282, 1288, 1480, 2018
MalI	GATC	6 cut(s)	1199, 1571, 1786, 1878, 2049, 2315
MboI	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	3 cut(s)	1569, 1784, 1876
MhlI	GDGCHC	4 cut(s)	986, 1315, 1686, 1698
MlsI	TGGCCA	2 cut(s)	1527, 2207
MluCI	AATT	9 cut(s)	475, 610, 976, 987, 1448, 1754, 1871, 1978, 2300
MluNI	TGGCCA	2 cut(s)	1527, 2207
MlyI	GAGTC	6 cut(s)	15, 1145, 1169, 1339, 1385, 1984
MmeI	TCCRAC	2 cut(s)	231, 1539
Mox20I	TGGCCA	2 cut(s)	1527, 2207
MroXI	GAANNNNTTC	2 cut(s)	83, 545
MscI	TGGCCA	2 cut(s)	1527, 2207
MseI	TTAA	7 cut(s)	945, 975, 1359, 1548, 2096, 2177, 2364
MslI	CAYNNNNRTG	6 cut(s)	231, 653, 777, 989, 1388, 1521
Msp20I	TGGCCA	2 cut(s)	1527, 2207
MspI	CCGG	5 cut(s)	76, 869, 1249, 1772, 1957
MspR9I	CCNGG	4 cut(s)	1250, 1782, 1995, 2238
MunI	CAATTG	1 cut(s)	987
Mva1269I	GAATGC	3 cut(s)	733, 1195, 1495
MvaI	CCWGG	3 cut(s)	1782, 1995, 2238
MvnI	CGCG	4 cut(s)	65, 446, 629, 636
MwoI	GCNNNNNNNGC	7 cut(s)	305, 398, 445, 721, 896, 1777, 1850
NciI	CCSGG	1 cut(s)	1250
NcoI	CCATGG	1 cut(s)	1516
NdeII	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
NlaIV	GGNNCC	5 cut(s)	490, 1002, 1571, 1801, 1878
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	5 cut(s)	175, 181, 233, 1480, 2018
NsbI	TGCGCA	1 cut(s)	537
NspI	RCATGY	3 cut(s)	1414, 1818, 2033
NspV	TTCGAA	1 cut(s)	815
OliI	CACNNNNGTG	2 cut(s)	231, 989
PagI	TCATGA	2 cut(s)	30, 772
PceI	AGGCCT	1 cut(s)	1748
PciI	ACATGT	2 cut(s)	1410, 2029
PcsI	WCGNNNNNNNCGW	4 cut(s)	177, 229, 633, 812
PctI	GAATGC	3 cut(s)	733, 1195, 1495
PdmI	GAANNNNTTC	2 cut(s)	83, 545
PfeI	GAWTC	5 cut(s)	674, 1562, 2253, 2263, 2352
PflFI	GACNNNGTC	2 cut(s)	173, 239
PflMI	CCANNNNNTGG	1 cut(s)	1660
PfoI	TCCNGGA	2 cut(s)	1248, 1993
PkrI	GCNGC	7 cut(s)	56, 403, 717, 1032, 1149, 1583, 1948
PleI	GAGTC	6 cut(s)	14, 1144, 1168, 1338, 1384, 1984
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
PpsI	GAGTC	6 cut(s)	14, 1144, 1168, 1338, 1384, 1984
Ppu21I	YACGTR	2 cut(s)	233, 484
PscI	ACATGT	2 cut(s)	1410, 2029
PsiI	TTATAA	2 cut(s)	885, 1760
Psp6I	CCWGG	3 cut(s)	1780, 1993, 2236
PspCI	CACGTG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	899
PspGI	CCWGG	3 cut(s)	1780, 1993, 2236
PspN4I	GGNNCC	5 cut(s)	490, 1002, 1571, 1801, 1878
PstI	CTGCAG	2 cut(s)	720, 1032
PstNI	CAGNNNCTG	4 cut(s)	724, 1232, 1787, 2141
PsuI	RGATCY	3 cut(s)	1569, 1784, 1876
PsyI	GACNNNGTC	2 cut(s)	173, 239
RsaI	GTAC	2 cut(s)	377, 482
RsaNI	GTAC	2 cut(s)	376, 481
RseI	CAYNNNNRTG	6 cut(s)	231, 653, 777, 989, 1388, 1521
SalI	GTCGAC	1 cut(s)	500
SaqAI	TTAA	7 cut(s)	945, 975, 1359, 1548, 2096, 2177, 2364
SatI	GCNGC	7 cut(s)	55, 402, 716, 1031, 1148, 1582, 1947
Sau3AI	GATC	6 cut(s)	1197, 1569, 1784, 1876, 2047, 2313
SchI	GAGTC	6 cut(s)	15, 1145, 1169, 1339, 1385, 1984
ScrFI	CCNGG	4 cut(s)	1250, 1782, 1995, 2238
SduI	GDGCHC	4 cut(s)	986, 1315, 1686, 1698
SfaNI	GCATC	4 cut(s)	1090, 1988, 2073, 2332
SfcI	CTRYAG	3 cut(s)	716, 1028, 1117
SfuI	TTCGAA	1 cut(s)	815
SmiMI	CAYNNNNRTG	6 cut(s)	231, 653, 777, 989, 1388, 1521
SmlI	CTYRAG	3 cut(s)	212, 1373, 2061
SmoI	CTYRAG	3 cut(s)	212, 1373, 2061
Sse9I	AATT	9 cut(s)	475, 610, 976, 987, 1448, 1754, 1871, 1978, 2300
SseBI	AGGCCT	1 cut(s)	1748
SsiI	CCGC	8 cut(s)	63, 399, 402, 623, 629, 710, 822, 1436
SspMI	CTAG	4 cut(s)	840, 1403, 1443, 2087
StuI	AGGCCT	1 cut(s)	1748
StyD4I	CCNGG	4 cut(s)	1248, 1780, 1993, 2236
StyI	CCWWGG	3 cut(s)	314, 1516, 1749
TaaI	ACNGT	8 cut(s)	181, 361, 574, 925, 1111, 1118, 1288, 2372
TaiI	ACGT	5 cut(s)	174, 235, 282, 486, 1849
TaqI	TCGA	9 cut(s)	323, 473, 501, 521, 549, 677, 815, 980, 1094
TasI	AATT	9 cut(s)	475, 610, 976, 987, 1448, 1754, 1871, 1978, 2300
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	5 cut(s)	674, 1562, 2253, 2263, 2352
Tru1I	TTAA	7 cut(s)	945, 975, 1359, 1548, 2096, 2177, 2364
Tru9I	TTAA	7 cut(s)	945, 975, 1359, 1548, 2096, 2177, 2364
TscAI	CASTG	4 cut(s)	364, 752, 930, 1542
TseFI	GTSAC	5 cut(s)	175, 181, 233, 1480, 2018
TseI	GCWGC	6 cut(s)	54, 715, 1030, 1147, 1581, 1946
Tsp45I	GTSAC	5 cut(s)	175, 181, 233, 1480, 2018
TspDTI	ATGAA	7 cut(s)	761, 773, 1337, 1545, 1655, 1659, 2180
TspRI	CASTG	4 cut(s)	364, 752, 930, 1542
Tth111I	GACNNNGTC	2 cut(s)	173, 239
Van91I	CCANNNNNTGG	1 cut(s)	1660
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	4 cut(s)	475, 1754, 1978, 2300
XceI	RCATGY	3 cut(s)	1414, 1818, 2033
XmiI	GTMKAC	5 cut(s)	9, 501, 905, 1120, 1208
XmnI	GAANNNNTTC	2 cut(s)	83, 545
XspI	CTAG	4 cut(s)	840, 1403, 1443, 2087
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.