Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0022528

Physical Location & Seq

Genomic Coordinates Reverse (-)

2031146 .. 2032012

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCGGGTTCCGGTGAACAAGAAGCACCAATTTCTGGGCAAGTCTCCGATTCAGGCGAACTAGAAGCACCGAGTTTTGCGCAAGTGCCATATTCCGGCGAACAAGCACCAAGTTCTGGGGAAAACTCCAATTCCACCGAACAAGAAGCACCAAATTCTGAGGAAAATCTCGGTTCCAGCGAAGCAACACAAGATTCTGAGGAAAACCCCGATTCCGGTGAAGCAGCACAAGATTCTGAGGAAAACCCCGAATCGGGCGAAGAAGCACCAACTTCTGAGGAGAACTCCGATTCCCGCGAATCAGCACCAACTTCTGAGAAAACGTCCGGGCCCAGCGAAGCAGCGCCAACTTCTGAGGAAAACACCAATTCCGATGAAGACCCAATGTCAGTGACCGGTTCCAATGAAGTTGAAAGAACCATTTCTGGGAATACCTCTGATTCCGGCGAAGCAACACCAATTTCTAGGGACAACACCGCTTCCGGCGAGGAAACAACATCTGGGGAAATGTCATTGACCGAAGCACCAATTTCTGGGAAAATCTCCGATTCCGAGCAAGAATATCGACCAATTTCTCCGAAAATGCCGGATCCATGGAAACAAGAGGAAATACCAAATTGTGATGATTATGTTCCATGGTTGATCGATAACACTGAATTTGTACAGGAACTCGTTGAGGAGCTGATGATTGGAGATCCACCTTTGCTCGATTACTCTCACGAGAACCCTGATCTTCCTCCTACCGTCACTGCGACAAAACCCTCTTCATCGTCGAGTGAGAGCGCAGCTGAGAATGTGAAGCTGGGAAAAGGAAAGATCGATGAGAAAGGTAAGGGGAAAGAAAAGCAAGAAGATGGTCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

289

Amino Acids

30.52

Weight (kDa)

4.05

Isoelectric Point (pI)

62.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022528)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g03120 pycom03g19470 pycom13g18620 pycom15g16010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
AccB7I	CCANNNNNTGG	3 cut(s)	35, 116, 533
AccII	CGCG	1 cut(s)	297
AciI	CCGC	2 cut(s)	295, 477
AclWI	GGATC	3 cut(s)	584, 597, 689
AcsI	RAATTY	2 cut(s)	154, 656
AfaI	GTAC	1 cut(s)	663
AfiI	CCNNNNNNNGG	8 cut(s)	35, 95, 116, 215, 253, 254, 426, 533
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	413
AhdI	GACNNNNNGTC	1 cut(s)	385
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	3 cut(s)	682, 788, 802
AluI	AGCT	3 cut(s)	682, 788, 802
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	584, 597, 689
AoxI	GGCC	1 cut(s)	329
ApaI	GGGCCC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	224, 341, 785
ApoI	RAATTY	2 cut(s)	154, 656
AsiGI	ACCGGT	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	3 cut(s)	82, 346, 785
AspS9I	GGNCC	2 cut(s)	329, 330
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	26, 230
BaeGI	GKGCMC	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	719
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	236, 353, 797
BccI	CCATC	1 cut(s)	848
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	62, 465
BfoI	RGCGCY	1 cut(s)	347
BisI	GCNGC	3 cut(s)	225, 342, 786
BlsI	GCNGC	3 cut(s)	226, 343, 787
Bme1390I	CCNGG	1 cut(s)	328
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	329, 330
BmiI	GGNNCC	5 cut(s)	10, 175, 331, 400, 591
BmrFI	CCNGG	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuMI	CCSGG	1 cut(s)	328
Bsa29I	ATCGAT	2 cut(s)	645, 819
BsaJI	CCNNGG	2 cut(s)	593, 635
BsaWI	WCCGGW	3 cut(s)	11, 215, 395
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 95, 116, 215, 253, 254, 426, 533
Bse118I	RCCGGY	1 cut(s)	395
BseCI	ATCGAT	2 cut(s)	645, 819
BseDI	CCNNGG	2 cut(s)	593, 635
BseLI	CCNNNNNNNGG	8 cut(s)	35, 95, 116, 215, 253, 254, 426, 533
BseMII	CTCAG	7 cut(s)	150, 189, 228, 267, 306, 345, 780
BseRI	GAGGAG	2 cut(s)	293, 692
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	3 cut(s)	236, 353, 797
BseYI	CCCAGC	2 cut(s)	332, 802
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	331
BshTI	ACCGGT	1 cut(s)	395
BshVI	ATCGAT	2 cut(s)	645, 819
BsiSI	CCGG	8 cut(s)	12, 96, 216, 327, 396, 444, 483, 587
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	8 cut(s)	35, 95, 116, 215, 253, 254, 426, 533
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	331
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp1407I	TGTACA	1 cut(s)	661
Bsp143I	GATC	5 cut(s)	589, 642, 694, 730, 816
Bsp19I	CCATGG	2 cut(s)	593, 635
BspACI	CCGC	2 cut(s)	295, 477
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	7 cut(s)	151, 190, 229, 268, 307, 346, 781
BspDI	ATCGAT	2 cut(s)	645, 819
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	5 cut(s)	10, 175, 331, 400, 591
BspPI	GGATC	3 cut(s)	584, 597, 689
BsrFI	RCCGGY	1 cut(s)	395
BsrGI	TGTACA	1 cut(s)	661
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	593, 635
BssMI	GATC	5 cut(s)	589, 642, 694, 730, 816
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	2 cut(s)	593, 635
Bst2BI	CACGAG	1 cut(s)	719
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	1 cut(s)	769
BstAUI	TGTACA	1 cut(s)	661
BstDEI	CTNAG	7 cut(s)	159, 198, 237, 276, 315, 354, 789
BstDSI	CCRYGG	2 cut(s)	593, 635
BstFNI	CGCG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	3 cut(s)	82, 346, 785
BstKTI	GATC	5 cut(s)	592, 645, 697, 733, 819
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	589, 642, 694, 730, 816
BstSCI	CCNGG	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	236, 353, 797
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	2 cut(s)	589, 694
BstYI	RGATCY	2 cut(s)	589, 694
Bsu15I	ATCGAT	2 cut(s)	645, 819
BsuRI	GGCC	1 cut(s)	331
BsuTUI	ATCGAT	2 cut(s)	645, 819
BtgI	CCRYGG	2 cut(s)	593, 635
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	396, 651, 747
CfoI	GCGC	3 cut(s)	82, 346, 785
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	329, 330
ClaI	ATCGAT	2 cut(s)	645, 819
Csp6I	GTAC	1 cut(s)	662
CspAI	ACCGGT	1 cut(s)	395
CviAII	CATG	2 cut(s)	594, 636
CviJI	RGCY	4 cut(s)	331, 682, 788, 802
CviKI_1	RGCY	4 cut(s)	331, 682, 788, 802
CviQI	GTAC	1 cut(s)	662
DdeI	CTNAG	7 cut(s)	159, 198, 237, 276, 315, 354, 789
DpnI	GATC	5 cut(s)	591, 644, 696, 732, 818
DpnII	GATC	5 cut(s)	589, 642, 694, 730, 816
DriI	GACNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	769
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	769
Eco130I	CCWWGG	2 cut(s)	593, 635
Eco24I	GRGCYC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	593, 635
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	593, 635
FaeI	CATG	2 cut(s)	597, 639
FaiI	YATR	4 cut(s)	91, 595, 630, 637
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	2 cut(s)	593, 635
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	3 cut(s)	225, 342, 786
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	3 cut(s)	225, 342, 786
FspBI	CTAG	2 cut(s)	62, 465
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	3 cut(s)	81, 345, 784
GluI	GCNGC	3 cut(s)	225, 342, 786
GsaI	CCCAGC	2 cut(s)	336, 806
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	8 cut(s)	12, 96, 216, 327, 396, 444, 483, 587
HhaI	GCGC	3 cut(s)	82, 346, 785
Hin1II	CATG	2 cut(s)	597, 639
Hin6I	GCGC	3 cut(s)	80, 344, 783
HinP1I	GCGC	3 cut(s)	80, 344, 783
HinfI	GANTC	9 cut(s)	50, 194, 212, 233, 251, 290, 299, 440, 548
HpaII	CCGG	8 cut(s)	12, 96, 216, 327, 396, 444, 483, 587
HphI	GGTGA	2 cut(s)	26, 230
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	719
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	775
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4IV	ACGT	1 cut(s)	323
HpyF3I	CTNAG	7 cut(s)	159, 198, 237, 276, 315, 354, 789
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	2 cut(s)	597, 639
HspAI	GCGC	3 cut(s)	80, 344, 783
Kzo9I	GATC	5 cut(s)	589, 642, 694, 730, 816
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	3 cut(s)	236, 353, 797
MaeI	CTAG	2 cut(s)	62, 465
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	391, 745
MalI	GATC	5 cut(s)	591, 644, 696, 732, 818
MboI	GATC	5 cut(s)	589, 642, 694, 730, 816
MboII	GAAGA	5 cut(s)	272, 389, 725, 756, 863
MflI	RGATCY	2 cut(s)	589, 694
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	9 cut(s)	30, 130, 154, 367, 459, 528, 570, 616, 656
MroXI	GAANNNNTTC	1 cut(s)	421
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	8 cut(s)	12, 96, 216, 327, 396, 444, 483, 587
MspR9I	CCNGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	297
NciI	CCSGG	1 cut(s)	328
NcoI	CCATGG	2 cut(s)	593, 635
NdeII	GATC	5 cut(s)	589, 642, 694, 730, 816
NlaIII	CATG	2 cut(s)	597, 639
NlaIV	GGNNCC	5 cut(s)	10, 175, 331, 400, 591
NmuCI	GTSAC	2 cut(s)	391, 745
NsbI	TGCGCA	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	9 cut(s)	50, 194, 212, 233, 251, 290, 299, 440, 548
PflMI	CCANNNNNTGG	3 cut(s)	35, 116, 533
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	226, 343, 787
PspFI	CCCAGC	2 cut(s)	332, 802
PspN4I	GGNNCC	5 cut(s)	10, 175, 331, 400, 591
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	2 cut(s)	329, 330
PsuI	RGATCY	2 cut(s)	589, 694
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	663
RsaNI	GTAC	1 cut(s)	662
SatI	GCNGC	3 cut(s)	225, 342, 786
Sau3AI	GATC	5 cut(s)	589, 642, 694, 730, 816
Sau96I	GGNCC	2 cut(s)	329, 330
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	7 cut(s)	326, 437, 684, 703, 790, 804, 832
Sse9I	AATT	9 cut(s)	30, 130, 154, 367, 459, 528, 570, 616, 656
SsiI	CCGC	2 cut(s)	295, 477
SspMI	CTAG	2 cut(s)	62, 465
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	2 cut(s)	593, 635
TaaI	ACNGT	1 cut(s)	745
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	5 cut(s)	565, 645, 708, 773, 819
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	9 cut(s)	30, 130, 154, 367, 459, 528, 570, 616, 656
TatI	WGTACW	1 cut(s)	661
TfiI	GAWTC	9 cut(s)	50, 194, 212, 233, 251, 290, 299, 440, 548
TscAI	CASTG	3 cut(s)	396, 658, 754
TseFI	GTSAC	2 cut(s)	391, 745
TseI	GCWGC	3 cut(s)	224, 341, 785
Tsp45I	GTSAC	2 cut(s)	391, 745
TspDTI	ATGAA	3 cut(s)	390, 420, 756
TspRI	CASTG	3 cut(s)	396, 658, 754
Van91I	CCANNNNNTGG	3 cut(s)	35, 116, 533
XapI	RAATTY	2 cut(s)	154, 656
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	2 cut(s)	62, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.