Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0022528

Physical Location & Seq

Genomic Coordinates Reverse (-)

11149947 .. 11151134

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCAGATTCCGGTGAACAAGGGGCAACAATGTCTGGGCAAGTTTCCGATTCCGATGAACAAACAGCACCAAGTTCCGATGAACAAACAGCACCAAGTTCTGCGCAATTGCCAGAGTCCAGCGGAGAAGAAGCACAAGATTCTGGGGAATCAGTACCAAATTCTGAGGAAAGCCCAGATCCCAGCGAAGCAGCAGAAGATTCTGAGGAAAACACCGAATCCAGCGAGCCGGTACCACCAACTCCTGCGAATACACCGGCTTCCAGTGTAGGAGAAACCGCAGGGGAAAAGAATTTTGATTTCGAGGATGTAAGAGCAGCACTTGCTGAGACTATTCCGGGTTTCGTTGGACAACAAGCACAAGTAAACCCATTGAGAATCAACTTCAATGCGTCCGGTTCCGGTGAAGCAAGCGTAGCAGAAGCACCAAAGCTTATGCCAAATCCACCTTCTTGGATAGAGGATTCCGATGAAGAAGGATTTCAGGGTCAACGAGAAGCAGCAAATCCCAATGAACAAGAAACAGATTCCAGTGACTCCGGTGAACCAGAAGTACAGTCCGCCGCACCACTGGAGGTGATTATTATGACTCCAGCGGATTGGAAAAAGGCTCTTTCTGATCAAGCAAAGGCAGAAGAAGAAGAAGAAGAAAAAGACAATCCGAAGGAAGTTGTTCCAGAGTTAATTCATAACACTAACCTTCAACAAGCAGAGATTAAAGAACGGGCGGTTGTGCATCCATCCTTGATCGGTGGCTCTAGCATGAACCCTGATCCTCCCGCGGCCGTGCGGAAACCTGATTCGCAGCCGAGTGAAAGTGCAGCCGAGAATGTGGAGCTGGGGAAAAGAAAGATCGATGCGAAGGGCAAGGGGAAACTGGAAGAGAACCAAGAAGATAGAGGAGAAGAAGAGGAAGCTGCAAGTCCGAGATCGAAGATACCTAAAAAATCTCAAGATGAGAGGCTGGCAATTGGGATCGATCCGTCTTTGCAAGCTCGCTCTAACAAGAACCCTGTTCTTCCTCCTGCCACCCCCGTGACAAAACCCGATTTGAAGCCGAGTGAAAGCGCCACCGAGGGGAAAAGAAAGATCGGAGAGAAGGGCAAGGGGAGCAAAGGGGAAGAAGAGAGCGAAGAAGGTGAAGCTGCAAGTCCAAATTCGAAGAAATTGAAAGGTCCAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

396

Amino Acids

41.8

Weight (kDa)

4.33

Isoelectric Point (pI)

68.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022528)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g03120 pycom03g19470 pycom13g18620 pycom15g16010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	105
Acc65I	GGTACC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	232
AccII	CGCG	1 cut(s)	782
AciI	CCGC	9 cut(s)	123, 279, 561, 564, 596, 728, 780, 782, 790
AclWI	GGATC	4 cut(s)	173, 767, 974, 983
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	3 cut(s)	160, 292, 1156
AfaI	GTAC	3 cut(s)	156, 234, 555
AfiI	CCNNNNNNNGG	1 cut(s)	1077
AgsI	TTSAA	4 cut(s)	388, 704, 1054, 1171
AjuI	GAANNNNNNNTTGG	2 cut(s)	433, 465
AleI	CACNNNNGTG	1 cut(s)	1034
AluBI	AGCT	5 cut(s)	433, 838, 917, 995, 1145
AluI	AGCT	5 cut(s)	433, 838, 917, 995, 1145
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	4 cut(s)	173, 767, 974, 983
AoxI	GGCC	1 cut(s)	783
ApeKI	GCWGC	7 cut(s)	191, 317, 500, 805, 821, 917, 1145
ApoI	RAATTY	3 cut(s)	160, 292, 1156
Asp700I	GAANNNNTTC	2 cut(s)	480, 672
Asp718I	GGTACC	1 cut(s)	232
AspLEI	GCGC	2 cut(s)	106, 1070
AspS9I	GGNCC	1 cut(s)	1175
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	5 cut(s)	26, 416, 554, 589, 1151
AsuII	TTCGAA	1 cut(s)	1160
AvaII	GGWCC	1 cut(s)	1175
BanI	GGYRCC	1 cut(s)	232
BbvI	GCAGC	7 cut(s)	203, 329, 512, 817, 833, 904, 1132
BccI	CCATC	1 cut(s)	748
BceAI	ACGGC	1 cut(s)	770
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	1071
BisI	GCNGC	9 cut(s)	192, 318, 501, 564, 783, 806, 822, 918, 1146
BlsI	GCNGC	9 cut(s)	193, 319, 502, 565, 784, 807, 823, 919, 1147
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	1175
BmgT120I	GGNCC	1 cut(s)	1175
BmiI	GGNNCC	2 cut(s)	234, 400
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	745, 847
BpmI	CTGGAG	2 cut(s)	576, 593
Bpu14I	TTCGAA	1 cut(s)	1160
BpuEI	CTTGAG	1 cut(s)	936
BpuMI	CCSGG	1 cut(s)	339
Bsa29I	ATCGAT	2 cut(s)	855, 978
BsaJI	CCNNGG	2 cut(s)	780, 1074
BsaWI	WCCGGW	4 cut(s)	11, 395, 401, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	1077
Bse118I	RCCGGY	2 cut(s)	229, 256
Bse1I	ACTGG	4 cut(s)	264, 531, 576, 882
BseCI	ATCGAT	2 cut(s)	855, 978
BseDI	CCNNGG	2 cut(s)	780, 1074
BseGI	GGATG	3 cut(s)	313, 736, 740
BseLI	CCNNNNNNNGG	1 cut(s)	1077
BseMII	CTCAG	3 cut(s)	156, 195, 318
BseNI	ACTGG	4 cut(s)	264, 531, 576, 882
BseRI	GAGGAG	1 cut(s)	915
BseX3I	CGGCCG	1 cut(s)	783
BseXI	GCAGC	7 cut(s)	203, 329, 512, 817, 833, 904, 1132
BseYI	CCCAGC	2 cut(s)	182, 838
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	782
Bsh1285I	CGRYCG	1 cut(s)	786
BshFI	GGCC	1 cut(s)	785
BshNI	GGYRCC	1 cut(s)	232
BshVI	ATCGAT	2 cut(s)	855, 978
BsiEI	CGRYCG	1 cut(s)	786
BsiSI	CCGG	7 cut(s)	12, 230, 257, 338, 396, 402, 540
BslI	CCNNNNNNNGG	1 cut(s)	1077
BsmAI	GTCTC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	785
Bsp119I	TTCGAA	1 cut(s)	1160
Bsp143I	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
BspACI	CCGC	9 cut(s)	123, 279, 561, 564, 596, 728, 780, 782, 790
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	3 cut(s)	157, 196, 319
BspDI	ATCGAT	2 cut(s)	855, 978
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	2 cut(s)	234, 400
BspPI	GGATC	4 cut(s)	173, 767, 974, 983
BspT104I	TTCGAA	1 cut(s)	1160
BspT107I	GGYRCC	1 cut(s)	232
BsrFI	RCCGGY	2 cut(s)	229, 256
BsrI	ACTGG	4 cut(s)	264, 531, 576, 882
BssAI	RCCGGY	2 cut(s)	229, 256
BssECI	CCNNGG	2 cut(s)	780, 1074
BssMI	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
Bst4CI	ACNGT	1 cut(s)	558
Bst6I	CTCTTC	4 cut(s)	876, 903, 1119, 1176
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	1160
BstC8I	GCNNGC	5 cut(s)	227, 412, 966, 993, 997
BstDEI	CTNAG	3 cut(s)	165, 204, 327
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	3 cut(s)	313, 736, 740
BstFNI	CGCG	1 cut(s)	782
BstH2I	RGCGCY	1 cut(s)	1071
BstHHI	GCGC	2 cut(s)	106, 1070
BstKTI	GATC	9 cut(s)	181, 622, 750, 775, 855, 932, 978, 982, 1092
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
BstMCI	CGRYCG	1 cut(s)	786
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 416, 1110
BstSCI	CCNGG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	7 cut(s)	203, 329, 512, 817, 833, 904, 1132
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	2 cut(s)	453, 600
BstYI	RGATCY	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	783
Bsu15I	ATCGAT	2 cut(s)	855, 978
BsuRI	GGCC	1 cut(s)	785
BsuTUI	ATCGAT	2 cut(s)	855, 978
BtgI	CCRYGG	1 cut(s)	780
BtsCI	GGATG	3 cut(s)	313, 736, 740
BtsIMutI	CAGTG	3 cut(s)	271, 538, 569
Cac8I	GCNNGC	5 cut(s)	227, 412, 966, 993, 997
CfoI	GCGC	2 cut(s)	106, 1070
Cfr10I	RCCGGY	2 cut(s)	229, 256
Cfr13I	GGNCC	1 cut(s)	1175
Cfr42I	CCGCGG	1 cut(s)	783
ClaI	ATCGAT	2 cut(s)	855, 978
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	155, 233, 554
CviAII	CATG	1 cut(s)	763
CviQI	GTAC	3 cut(s)	155, 233, 554
DdeI	CTNAG	3 cut(s)	165, 204, 327
DpnI	GATC	9 cut(s)	180, 621, 749, 774, 854, 931, 977, 981, 1091
DpnII	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
EaeI	YGGCCR	1 cut(s)	783
EagI	CGGCCG	1 cut(s)	783
Eam1104I	CTCTTC	4 cut(s)	876, 903, 1119, 1176
EarI	CTCTTC	4 cut(s)	876, 903, 1119, 1176
EciI	GGCGGA	1 cut(s)	550
EclXI	CGGCCG	1 cut(s)	783
Eco47I	GGWCC	1 cut(s)	1175
Eco52I	CGGCCG	1 cut(s)	783
FaeI	CATG	1 cut(s)	766
FaiI	YATR	4 cut(s)	437, 587, 690, 764
FatI	CATG	1 cut(s)	762
FauI	CCCGC	1 cut(s)	787
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	9 cut(s)	192, 318, 501, 564, 783, 806, 822, 918, 1146
FokI	GGATG	3 cut(s)	320, 723, 727
Fsp4HI	GCNGC	9 cut(s)	192, 318, 501, 564, 783, 806, 822, 918, 1146
FspBI	CTAG	1 cut(s)	759
FspI	TGCGCA	1 cut(s)	105
GlaI	GCGC	2 cut(s)	105, 1069
GluI	GCNGC	9 cut(s)	192, 318, 501, 564, 783, 806, 822, 918, 1146
GsaI	CCCAGC	2 cut(s)	186, 842
GsuI	CTGGAG	2 cut(s)	576, 593
HaeII	RGCGCY	1 cut(s)	1071
HaeIII	GGCC	1 cut(s)	785
HapII	CCGG	7 cut(s)	12, 230, 257, 338, 396, 402, 540
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	106, 1070
Hin1II	CATG	1 cut(s)	766
Hin6I	GCGC	2 cut(s)	104, 1068
HinP1I	GCGC	2 cut(s)	104, 1068
HincII	GTYRAC	1 cut(s)	491
HindII	GTYRAC	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	431
HpaII	CCGG	7 cut(s)	12, 230, 257, 338, 396, 402, 540
HphI	GGTGA	5 cut(s)	26, 416, 554, 589, 1151
Hpy166II	GTNNAC	4 cut(s)	17, 367, 491, 545
Hpy188III	TCNNGA	3 cut(s)	677, 953, 1178
Hpy8I	GTNNAC	4 cut(s)	17, 367, 491, 545
HpyAV	CCTTC	7 cut(s)	459, 470, 658, 710, 856, 1093, 1130
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4V	TGCA	5 cut(s)	736, 821, 920, 991, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 416, 1110
HpyF3I	CTNAG	3 cut(s)	165, 204, 327
Hsp92II	CATG	1 cut(s)	766
HspAI	GCGC	2 cut(s)	104, 1068
KpnI	GGTACC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	619
KspI	CCGCGG	1 cut(s)	783
Kzo9I	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
LmnI	GCTCC	2 cut(s)	835, 1110
Lsp1109I	GCAGC	7 cut(s)	203, 329, 512, 817, 833, 904, 1132
LweI	GCATC	2 cut(s)	745, 847
MaeI	CTAG	1 cut(s)	759
MaeIII	GTNAC	2 cut(s)	533, 1036
MalI	GATC	9 cut(s)	180, 621, 749, 774, 854, 931, 977, 981, 1091
MboI	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
MfeI	CAATTG	2 cut(s)	107, 969
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	7 cut(s)	107, 160, 292, 684, 969, 1156, 1166
MlyI	GAGTC	3 cut(s)	125, 530, 583
MmeI	TCCRAC	1 cut(s)	328
MroXI	GAANNNNTTC	2 cut(s)	480, 672
MseI	TTAA	2 cut(s)	683, 717
MslI	CAYNNNNRTG	1 cut(s)	1034
MspA1I	CMGCKG	3 cut(s)	123, 596, 782
MspI	CCGG	7 cut(s)	12, 230, 257, 338, 396, 402, 540
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	2 cut(s)	107, 969
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	3 cut(s)	323, 416, 1110
NciI	CCSGG	1 cut(s)	339
NdeII	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
NlaIII	CATG	1 cut(s)	766
NlaIV	GGNNCC	2 cut(s)	234, 400
NmeAIII	GCCGAG	3 cut(s)	834, 850, 1083
NmuCI	GTSAC	2 cut(s)	533, 1036
NsbI	TGCGCA	1 cut(s)	105
NspV	TTCGAA	1 cut(s)	1160
OliI	CACNNNNGTG	1 cut(s)	1034
PdmI	GAANNNNTTC	2 cut(s)	480, 672
PkrI	GCNGC	9 cut(s)	193, 319, 502, 565, 784, 807, 823, 919, 1147
PleI	GAGTC	3 cut(s)	124, 530, 583
PpsI	GAGTC	3 cut(s)	124, 530, 583
PspFI	CCCAGC	2 cut(s)	182, 838
PspN4I	GGNNCC	2 cut(s)	234, 400
PspPI	GGNCC	1 cut(s)	1175
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	156, 234, 555
RsaNI	GTAC	3 cut(s)	155, 233, 554
RseI	CAYNNNNRTG	1 cut(s)	1034
SacII	CCGCGG	1 cut(s)	783
SaqAI	TTAA	2 cut(s)	683, 717
SatI	GCNGC	9 cut(s)	192, 318, 501, 564, 783, 806, 822, 918, 1146
Sau3AI	GATC	9 cut(s)	178, 619, 747, 772, 852, 929, 975, 979, 1089
Sau96I	GGNCC	1 cut(s)	1175
SchI	GAGTC	3 cut(s)	125, 530, 583
ScrFI	CCNGG	1 cut(s)	339
SfaNI	GCATC	2 cut(s)	745, 847
Sfr303I	CCGCGG	1 cut(s)	783
SfuI	TTCGAA	1 cut(s)	1160
SgrBI	CCGCGG	1 cut(s)	783
SinI	GGWCC	1 cut(s)	1175
SmiMI	CAYNNNNRTG	1 cut(s)	1034
SmlI	CTYRAG	1 cut(s)	951
SmoI	CTYRAG	1 cut(s)	951
Sse9I	AATT	7 cut(s)	107, 160, 292, 684, 969, 1156, 1166
SsiI	CCGC	9 cut(s)	123, 279, 561, 564, 596, 728, 780, 782, 790
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	558
TaqI	TCGA	5 cut(s)	303, 855, 932, 978, 1160
TasI	AATT	7 cut(s)	107, 160, 292, 684, 969, 1156, 1166
TatI	WGTACW	1 cut(s)	553
TauI	GCSGC	2 cut(s)	566, 785
Tru1I	TTAA	2 cut(s)	683, 717
Tru9I	TTAA	2 cut(s)	683, 717
TscAI	CASTG	3 cut(s)	271, 538, 576
TseFI	GTSAC	2 cut(s)	533, 1036
TseI	GCWGC	7 cut(s)	191, 317, 500, 805, 821, 917, 1145
Tsp45I	GTSAC	2 cut(s)	533, 1036
TspDTI	ATGAA	6 cut(s)	72, 96, 486, 528, 677, 779
TspGWI	ACGGA	1 cut(s)	972
TspRI	CASTG	3 cut(s)	271, 538, 576
VpaK11BI	GGWCC	1 cut(s)	1175
XapI	RAATTY	3 cut(s)	160, 292, 1156
XmnI	GAANNNNTTC	2 cut(s)	480, 672
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.