Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0022528

Physical Location & Seq

Genomic Coordinates Forward (+)

14682482 .. 14683000

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGATTGGGGATCCTTCTTTGCTCGCTTCCTCTAACGAGAACTTTGTGCTTCCTCTTGTCGCCGCCTTAATAGAACTCAATTCGCAGTCGAGTGAAAGCGCCGCTGAGAATGTGGAGCCGGGGAAAAGAAAGATCTATAAGAAGGGTTCGCTCAAGAAACAAAATCTACTGCTCACCTGGGATTCAATTTCCTTCATTCTTCTCTCTTATCCCCGAATCGGATTCCGCAACCGTGAAACCGCAACTGAATCTGTGTTGGTTGGCACCACGTGGAAAAAAAGAGATCGAGGCAGGGGTTGTCGGCGGAGAGATATATGGCAAGTTGTTCTCCGTCAGGCCTATCGGGGGGCTTCTTTTCATCGATATGTTGTTGAAACTGGAGACCATCAGGTCGACGAAGGGTTCGCCCGCTGCGGGTTTGCTGGACTCTGGAAGGCCGAGAAAAGTTGGAAGAGCCATGGCTGCGAACTCTATGAAAAATCATCGATCGACCGAGTCACTGAGACTTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

173

Amino Acids

19.51

Weight (kDa)

9.45

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022528)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g03120 pycom03g19470 pycom13g18620 pycom15g16010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	396
AciI	CCGC	7 cut(s)	66, 105, 229, 243, 307, 412, 417
AclWI	GGATC	2 cut(s)	8, 21
AcvI	CACGTG	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	221, 348, 417
AgsI	TTSAA	2 cut(s)	189, 377
AjnI	CCWGG	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	378, 500
AlwI	GGATC	2 cut(s)	8, 21
AoxI	GGCC	2 cut(s)	339, 438
ApeKI	GCWGC	2 cut(s)	414, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspLEI	GCGC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	401, 452
BccI	CCATC	1 cut(s)	396
BciT130I	CCWGG	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	378, 500
BfoI	RGCGCY	1 cut(s)	105
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	4 cut(s)	66, 105, 415, 466
BlsI	GCNGC	4 cut(s)	67, 106, 416, 467
Bme1390I	CCNGG	2 cut(s)	123, 181
BmiI	GGNNCC	3 cut(s)	15, 120, 268
BmrFI	CCNGG	2 cut(s)	123, 181
BpmI	CTGGAG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	123
Bsa29I	ATCGAT	2 cut(s)	364, 488
BsaAI	YACGTR	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	122, 180, 460
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 348, 417
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	181
BseCI	ATCGAT	2 cut(s)	364, 488
BseDI	CCNNGG	3 cut(s)	122, 180, 460
BseLI	CCNNNNNNNGG	3 cut(s)	221, 348, 417
BseMII	CTCAG	2 cut(s)	99, 495
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	401, 452
Bsh1285I	CGRYCG	2 cut(s)	492, 496
BshFI	GGCC	2 cut(s)	341, 440
BshNI	GGYRCC	1 cut(s)	266
BshVI	ATCGAT	2 cut(s)	364, 488
BsiEI	CGRYCG	2 cut(s)	492, 496
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	221, 348, 417
BsmAI	GTCTC	2 cut(s)	378, 500
BsnI	GGCC	2 cut(s)	341, 440
Bso31I	GGTCTC	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	13, 135, 286, 489
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	7 cut(s)	66, 105, 229, 243, 307, 412, 417
BspANI	GGCC	2 cut(s)	341, 440
BspCNI	CTCAG	2 cut(s)	100, 496
BspDI	ATCGAT	2 cut(s)	364, 488
BspLI	GGNNCC	3 cut(s)	15, 120, 268
BspPI	GGATC	2 cut(s)	8, 21
BspQI	GCTCTTC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	122, 180, 460
BssMI	GATC	4 cut(s)	13, 135, 286, 489
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	27, 412
BstDEI	CTNAG	2 cut(s)	108, 504
BstDSI	CCRYGG	1 cut(s)	460
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	4 cut(s)	16, 138, 289, 492
BstMAI	GTCTC	2 cut(s)	378, 500
BstMBI	GATC	4 cut(s)	13, 135, 286, 489
BstMCI	CGRYCG	2 cut(s)	492, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	121, 179
BstV1I	GCAGC	2 cut(s)	401, 452
BstX2I	RGATCY	2 cut(s)	13, 135
BstYI	RGATCY	2 cut(s)	13, 135
Bsu15I	ATCGAT	2 cut(s)	364, 488
BsuRI	GGCC	2 cut(s)	341, 440
BsuTUI	ATCGAT	2 cut(s)	364, 488
BtgI	CCRYGG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	27, 412
CfoI	GCGC	1 cut(s)	104
ClaI	ATCGAT	2 cut(s)	364, 488
CviAII	CATG	1 cut(s)	461
CviJI	RGCY	6 cut(s)	121, 341, 353, 440, 459, 465
CviKI_1	RGCY	6 cut(s)	121, 341, 353, 440, 459, 465
DdeI	CTNAG	2 cut(s)	108, 504
DpnI	GATC	4 cut(s)	15, 137, 288, 491
DpnII	GATC	4 cut(s)	13, 135, 286, 489
DraIII	CACNNNGTG	1 cut(s)	273
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
EciI	GGCGGA	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	460
Eco147I	AGGCCT	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	378
Eco72I	CACGTG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	464
FaiI	YATR	6 cut(s)	141, 317, 319, 369, 462, 477
FatI	CATG	1 cut(s)	460
FauI	CCCGC	2 cut(s)	410, 419
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	4 cut(s)	66, 105, 415, 466
Fsp4HI	GCNGC	4 cut(s)	66, 105, 415, 466
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	66, 105, 415, 466
GsuI	CTGGAG	1 cut(s)	402
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	341, 440
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	6 cut(s)	185, 219, 225, 251, 429, 498
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	2 cut(s)	157, 433
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	5 cut(s)	27, 139, 205, 395, 430
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	2 cut(s)	108, 504
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	13, 135, 286, 489
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	135, 166, 193, 280, 323, 366, 377, 411, 418
Lsp1109I	GCAGC	2 cut(s)	401, 452
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	15, 137, 288, 491
MboI	GATC	4 cut(s)	13, 135, 286, 489
MboII	GAAGA	2 cut(s)	194, 466
MflI	RGATCY	2 cut(s)	13, 135
MluCI	AATT	2 cut(s)	82, 189
MlyI	GAGTC	2 cut(s)	423, 507
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	3 cut(s)	43, 66, 284
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	107, 414
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	123, 181
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	4 cut(s)	13, 135, 286, 489
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	3 cut(s)	15, 120, 268
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	449
PfeI	GAWTC	4 cut(s)	185, 219, 225, 251
PflFI	GACNNNGTC	1 cut(s)	497
PkrI	GCNGC	4 cut(s)	67, 106, 416, 467
Ple19I	CGATCG	1 cut(s)	492
PleI	GAGTC	2 cut(s)	423, 506
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	423, 506
Ppu21I	YACGTR	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	179
PspCI	CACGTG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	3 cut(s)	15, 120, 268
PsuI	RGATCY	2 cut(s)	13, 135
PsyI	GACNNNGTC	1 cut(s)	497
PvuI	CGATCG	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	4 cut(s)	66, 105, 415, 466
Sau3AI	GATC	4 cut(s)	13, 135, 286, 489
SchI	GAGTC	2 cut(s)	423, 507
ScrFI	CCNGG	2 cut(s)	123, 181
SetI	ASST	3 cut(s)	182, 275, 396
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	82, 189
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	7 cut(s)	66, 105, 229, 243, 307, 412, 417
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	121, 179
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	6 cut(s)	92, 289, 364, 396, 488, 492
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	2 cut(s)	82, 189
TauI	GCSGC	2 cut(s)	68, 107
TfiI	GAWTC	4 cut(s)	185, 219, 225, 251
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	2 cut(s)	414, 465
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	187, 350, 492
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	508
Tth111I	GACNNNGTC	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.