pycom02g07020

elf4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011811
Physical Location & Seq
Reverse (-)
4867675 .. 4868025
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07020.1

Sequence Viewer

Length: 351 bp
ATGGAGGGTGACACATTCTCAGGGCTTGGCAATGGCAGCACACAAATTGATGGAAAAGTTCTGCAGACGTTTCAGAAGAGCTTTGTGCAAGTGCAGAATATCTTGGACCAAAACAGGCTGCTGATAAATGAGATTAATCACAACCATGAATCCAAAATCCCTGACAATTTAAGCAGAAATGTGGGTCTGATCAGGGAGCTCAACAACAACATCAGGAGAGTGGTTGATCTTTATGCTGATCTCTCAAGCTCCTTCACCAAGTCCATGGATACTTCTTCTGAGGGAGGAGATTCCAGCGGGGCTTTGAAGTCTGATGGAAAAGCTGGGCACAAGAGAATTAGGCCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1313

Protein Analysis

117

Amino Acids

12.71

Weight (kDa)

6.83

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 95 5.9e-41 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 297
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 4 cut(s) 81, 199, 249, 323
AluI AGCT 4 cut(s) 81, 199, 249, 323
Alw21I GWGCWC 1 cut(s) 201
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 36, 118
AseI ATTAAT 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 20, 247
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 48, 105
BccI CCATC 2 cut(s) 44, 308
BciVI GTATCC 1 cut(s) 262
BclI TGATCA 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 262
BisI GCNGC 2 cut(s) 37, 119
BlsI GCNGC 2 cut(s) 38, 120
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 33, 270
BseRI GAGGAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 2 cut(s) 48, 105
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 201
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 201, 330
Bsp143I GATC 3 cut(s) 189, 226, 238
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 2 cut(s) 32, 271
BspMAI CTGCAG 1 cut(s) 66
BspQI GCTCTTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 189, 226, 238
BssT1I CCWWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 3 cut(s) 19, 279, 348
BstDSI CCRYGG 1 cut(s) 264
BstKTI GATC 3 cut(s) 192, 229, 241
BstMBI GATC 3 cut(s) 189, 226, 238
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 48, 105
BstXI CCANNNNNNTGG 1 cut(s) 265
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 2 cut(s) 146, 265
CviJI RGCY 8 cut(s) 25, 81, 118, 199, 249, 302, 323, 343
CviKI_1 RGCY 8 cut(s) 25, 81, 118, 199, 249, 302, 323, 343
DdeI CTNAG 3 cut(s) 19, 279, 348
DpnI GATC 3 cut(s) 191, 228, 240
DpnII GATC 3 cut(s) 189, 226, 238
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 264
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 149, 268
FaiI YATR 3 cut(s) 147, 234, 266
FatI CATG 2 cut(s) 145, 264
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 37, 119
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 37, 119
GluI GCNGC 2 cut(s) 37, 119
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 343
Hin1II CATG 2 cut(s) 149, 268
HinfI GANTC 2 cut(s) 149, 290
HphI GGTGA 2 cut(s) 20, 247
Hpy188I TCNGA 4 cut(s) 75, 189, 280, 313
Hpy188III TCNNGA 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 64, 88, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 3 cut(s) 19, 279, 348
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 149, 268
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 3 cut(s) 189, 226, 238
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 196, 254
LpnPI CCDG 7 cut(s) 6, 100, 174, 178, 199, 307, 309
Lsp1109I GCAGC 2 cut(s) 48, 105
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 191, 228, 240
MboI GATC 3 cut(s) 189, 226, 238
MboII GAAGA 2 cut(s) 88, 267
MhlI GDGCHC 2 cut(s) 201, 330
MluCI AATT 3 cut(s) 45, 166, 336
MnlI CCTC 2 cut(s) 274, 278
MseI TTAA 2 cut(s) 135, 170
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 189, 226, 238
NlaIII CATG 2 cut(s) 149, 268
NmuCI GTSAC 1 cut(s) 8
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 149, 290
PkrI GCNGC 2 cut(s) 38, 120
PshBI ATTAAT 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 106
PstI CTGCAG 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 135, 170
SatI GCNGC 2 cut(s) 37, 119
Sau3AI GATC 3 cut(s) 189, 226, 238
Sau96I GGNCC 1 cut(s) 106
SduI GDGCHC 2 cut(s) 201, 330
SetI ASST 5 cut(s) 71, 83, 201, 251, 325
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 3 cut(s) 45, 166, 336
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 1 cut(s) 297
SstI GAGCTC 1 cut(s) 201
StuI AGGCCT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 264
TaiI ACGT 1 cut(s) 71
TasI AATT 3 cut(s) 45, 166, 336
TfiI GAWTC 2 cut(s) 149, 290
Tru1I TTAA 2 cut(s) 135, 170
Tru9I TTAA 2 cut(s) 135, 170
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 36, 118
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 106
VspI ATTAAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.