pycom02g13480

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0017576
Physical Location & Seq
Reverse (-)
10004050 .. 10004797
748 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGATCAGGCAGGGTTTCCGAACCCCCAAGTGCGAGGAGCGTATGGAGTTGTACGATGAGCAAAGAGCGAAAAGCTACTCCTACAAATCGAAAGAGTGGGATGAAAACGAAGACAAAGTGGGTTCCAAGATGGCGGAACTGATTAAGACCAAAGAGGAGCTCAAGAAAGCTAAGGAGAGCGCCCTGCAGGCGTGGATAGACTCCAGGCCTCTGACTGATGAGCTTGAACTGCTGAAATGCGGCCTTGAAATTGCTGAAAAACGATGTGACACGCCCAGTATCATCTCGGACCTTGAAGCACAGCTTGAGACGACAATCCAGAGCATCAAATCCAAGAAGGAGGAACAACACAAGGCGACGGGGATGGTCAATGAAATAAATCAGGCGTTGGATCAAACGCGTCAAGAGACGGAAAGGTTTAAGTGCGATGCTGATGAAGAATTACAAGCAAGATCAACATTGAAGCAAGCCCTTCATCTGAGGAGACAGACTCTGCGAACACTGCAACTTGGACTTGAAGCTGTACGAATAGAAAAAGAAGCGAAGAGTACCATGCCTTGGCAAAAAGAGCTCAAGATGAAAATTCTCTTTCAGACTGGCGTGTTTTGGTTGCATCAGAACAGAAGCTCGCAACAGAGGCAAGCAGAAACAAAGCTTTGGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

223

Amino Acids

26.1

Weight (kDa)

8.23

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 21 - 182 1.4e-06 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15570
prunus_persica Prupe.7G137300_v2.0.a1
pyrus_communis pycom02g13480
rosa_laevigata RLG00000017366
rosa_multiflora Rmu_sc0003419.1_g000005
rosa_roxburghii Rroxscaffold_2G00138690
rosa_rugosa Rorug02G0123800
rosa_samantha Rh2AG174000 Rh2BG181600 Rh2CG178900 Rh2DG180300
rosa_wichuraiana Rw2G013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 558
AccII CGCG 1 cut(s) 400
AciI CCGC 2 cut(s) 134, 240
AclWI GGATC 1 cut(s) 399
AcsI RAATTY 1 cut(s) 582
AfaI GTAC 3 cut(s) 53, 525, 550
AfiI CCNNNNNNNGG 1 cut(s) 558
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 5 cut(s) 227, 248, 296, 463, 518
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 9 cut(s) 75, 160, 170, 223, 304, 521, 571, 627, 655
AluI AGCT 9 cut(s) 75, 160, 170, 223, 304, 521, 571, 627, 655
Alw21I GWGCWC 2 cut(s) 162, 573
Alw26I GTCTC 3 cut(s) 302, 401, 478
AlwI GGATC 1 cut(s) 399
AlwNI CAGNNNCTG 1 cut(s) 493
AoxI GGCC 2 cut(s) 206, 241
ApoI RAATTY 1 cut(s) 582
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 289
AvaII GGWCC 1 cut(s) 289
BanII GRGCYC 2 cut(s) 162, 573
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 162, 573
BccI CCATC 2 cut(s) 124, 358
BciT130I CCWGG 1 cut(s) 205
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 302, 401, 478
BfmI CTRYAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 205
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 3 cut(s) 333, 418, 622
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpmI CTGGAG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 3 cut(s) 146, 326, 557
BsaJI CCNNGG 1 cut(s) 557
Bsc4I CCNNNNNNNGG 1 cut(s) 558
Bse1I ACTGG 2 cut(s) 276, 601
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 557
BseGI GGATG 2 cut(s) 106, 369
BseLI CCNNNNNNNGG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 2 cut(s) 276, 601
BseRI GAGGAG 3 cut(s) 50, 170, 496
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 208, 243
BsiHKAI GWGCWC 2 cut(s) 162, 573
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 3 cut(s) 302, 401, 478
BsmBI CGTCTC 2 cut(s) 302, 401
BsnI GGCC 2 cut(s) 208, 243
Bsp1286I GDGCHC 2 cut(s) 162, 573
Bsp143I GATC 3 cut(s) 3, 391, 452
BspACI CCGC 2 cut(s) 134, 240
BspANI GGCC 2 cut(s) 208, 243
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 1 cut(s) 399
BsrI ACTGG 2 cut(s) 276, 601
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 3 cut(s) 3, 391, 452
BssT1I CCWWGG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 539
BstC8I GCNNGC 4 cut(s) 189, 468, 629, 642
BstDEI CTNAG 2 cut(s) 171, 479
BstF5I GGATG 2 cut(s) 106, 369
BstFNI CGCG 1 cut(s) 400
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 3 cut(s) 6, 394, 455
BstMAI GTCTC 3 cut(s) 302, 401, 478
BstMBI GATC 3 cut(s) 3, 391, 452
BstMWI GCNNNNNNNGC 5 cut(s) 188, 229, 502, 568, 637
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 185
BstUI CGCG 1 cut(s) 400
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 208, 243
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 106, 369
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 1 cut(s) 500
Cac8I GCNNGC 4 cut(s) 189, 468, 629, 642
CaiI CAGNNNCTG 1 cut(s) 493
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 1 cut(s) 389
Csp6I GTAC 3 cut(s) 52, 524, 549
CviAII CATG 1 cut(s) 553
CviQI GTAC 3 cut(s) 52, 524, 549
DdeI CTNAG 2 cut(s) 171, 479
DpnI GATC 3 cut(s) 5, 393, 454
DpnII GATC 3 cut(s) 3, 391, 452
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
EciI GGCGGA 1 cut(s) 149
Ecl136II GAGCTC 2 cut(s) 160, 571
Eco130I CCWWGG 1 cut(s) 557
Eco147I AGGCCT 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 162, 573
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 2 cut(s) 160, 571
EcoICRI GAGCTC 2 cut(s) 160, 571
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 557
EcoT38I GRGCYC 2 cut(s) 162, 573
ErhI CCWWGG 1 cut(s) 557
Esp3I CGTCTC 2 cut(s) 302, 401
FaeI CATG 1 cut(s) 556
FaiI YATR 2 cut(s) 44, 554
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 1 cut(s) 552
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 2 cut(s) 113, 376
FriOI GRGCYC 2 cut(s) 162, 573
Fsp4HI GCNGC 1 cut(s) 241
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 208, 243
HgaI GACGC 1 cut(s) 389
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 556
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 2 cut(s) 200, 490
Hpy188I TCNGA 6 cut(s) 20, 213, 289, 480, 594, 618
Hpy188III TCNNGA 4 cut(s) 163, 319, 404, 574
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 331, 482
HpyCH4V TGCA 3 cut(s) 187, 505, 613
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 229, 502, 568, 637
HpyF3I CTNAG 2 cut(s) 171, 479
Hsp92II CATG 1 cut(s) 556
HspAI GCGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 391, 452
LmnI GCTCC 2 cut(s) 37, 157
LpnPI CCDG 8 cut(s) 173, 190, 197, 217, 289, 332, 368, 582
LweI GCATC 3 cut(s) 333, 418, 622
MaeIII GTNAC 1 cut(s) 266
MalI GATC 3 cut(s) 5, 393, 454
MboI GATC 3 cut(s) 3, 391, 452
MboII GAAGA 3 cut(s) 122, 449, 556
MhlI GDGCHC 2 cut(s) 162, 573
MluCI AATT 4 cut(s) 249, 440, 582, 664
MluI ACGCGT 1 cut(s) 398
MlyI GAGTC 2 cut(s) 194, 484
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 6 cut(s) 28, 148, 219, 334, 474, 630
MseI TTAA 2 cut(s) 144, 420
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 5 cut(s) 188, 229, 502, 568, 637
NdeII GATC 3 cut(s) 3, 391, 452
NlaIII CATG 1 cut(s) 556
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 266
PceI AGGCCT 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 558
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 2 cut(s) 194, 484
PpsI GAGTC 2 cut(s) 194, 484
Psp124BI GAGCTC 2 cut(s) 162, 573
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 289
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 493
RsaI GTAC 3 cut(s) 53, 525, 550
RsaNI GTAC 3 cut(s) 52, 524, 549
SacI GAGCTC 2 cut(s) 162, 573
SaqAI TTAA 2 cut(s) 144, 420
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 3 cut(s) 3, 391, 452
Sau96I GGNCC 1 cut(s) 289
SbfI CCTGCAGG 1 cut(s) 189
SchI GAGTC 2 cut(s) 194, 484
ScrFI CCNGG 1 cut(s) 205
SdaI CCTGCAGG 1 cut(s) 189
SduI GDGCHC 2 cut(s) 162, 573
SfaNI GCATC 3 cut(s) 333, 418, 622
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 3 cut(s) 161, 305, 572
SmoI CTYRAG 3 cut(s) 161, 305, 572
Sse8387I CCTGCAGG 1 cut(s) 189
Sse9I AATT 4 cut(s) 249, 440, 582, 664
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 2 cut(s) 134, 240
SstI GAGCTC 2 cut(s) 162, 573
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 557
TaqI TCGA 1 cut(s) 89
TasI AATT 4 cut(s) 249, 440, 582, 664
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 2 cut(s) 144, 420
Tru9I TTAA 2 cut(s) 144, 420
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 5 cut(s) 117, 387, 450, 464, 593
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 1 cut(s) 507
Van91I CCANNNNNTGG 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.