Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0022376

Physical Location & Seq

Genomic Coordinates Reverse (-)

15703220 .. 15704956

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTATTCACCTACAAATCGTAGTAATCCACCAAAAGAAAATGTTCAAAAAAACTGTTTTGGGTTGTACAATTGGATTTGCAAGTTTAAACGTCCGAAGAAGATTGGGATGCTCCTTCTTTGGTTCATCTCCACTGTTTTTGCAATTAATTCCTCACACTTGCCAGTGATTCCTTTTGCAACTGCAAACTGTGTTATGCCTAGGAAACTCAGAATACCTGGGAAGGTTGCTGAAATTCAGCATGCCAATTTGCGCATCTTTAATGGTGATGTTTATCCAGATGATGTGGTTTTGCAAGATGTCCCAACTTCTTACGATCAAGAATATAACAATGTTTCAAACTCTTTACTATCACATGACAATACAACCAATCCTGTTCAACCATATACATCTTTTTTGAAACAAAATGCATCTGTTAGCGATGAATTCAACTCATCTTCGTCTGTTGCTAGCACTTCACATGAAATCACTGTCCCTATTTTTCTTGCGAATGATGCCACTTTGCGTGTTATATTGGTCACTGATACTGAAGCTGGTCATTCTGTGGTGTTCCAGATTATATTGATTTTGGCCCTAGAAATTTTCAATGTCAATATTGTGGCACTTTATTTTGGTCTACAGAGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1

Protein Analysis

210

Amino Acids

23.38

Weight (kDa)

6.19

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022376)

Species	Orthologous Gene IDs
malus_domestica	MD02G1286700.v1.1 MD08G1140500.v1.1 MD08G1235000.v1.1
pyrus_communis	pycom02g17580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	616
AcsI	RAATTY	3 cut(s)	234, 425, 579
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	68
AgsI	TTSAA	6 cut(s)	47, 339, 380, 400, 430, 586
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	1 cut(s)	533
AluI	AGCT	1 cut(s)	533
AoxI	GGCC	1 cut(s)	570
ApoI	RAATTY	3 cut(s)	234, 425, 579
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	42
AspA2I	CCTAGG	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	278
AsuNHI	GCTAGC	1 cut(s)	449
AvrII	CCTAGG	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	219
BfaI	CTAG	3 cut(s)	201, 450, 575
BfmI	CTRYAG	1 cut(s)	617
BlnI	CCTAGG	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	4 cut(s)	99, 264, 419, 484
BmtI	GCTAGC	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	200, 218
Bse1I	ACTGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	200, 218
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	572
BslFI	GGGAC	2 cut(s)	287, 458
BsmFI	GGGAC	2 cut(s)	287, 458
BsnI	GGCC	1 cut(s)	572
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	200, 218
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	56, 136, 191, 472
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	243, 451
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	617
BsuRI	GGCC	1 cut(s)	572
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	4 cut(s)	132, 171, 468, 519
Cac8I	GCNNGC	2 cut(s)	243, 451
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	571
Csp6I	GTAC	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	3 cut(s)	242, 356, 461
CviJI	RGCY	2 cut(s)	533, 572
CviKI_1	RGCY	2 cut(s)	533, 572
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraI	TTTAAA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	3 cut(s)	245, 359, 464
FaiI	YATR	9 cut(s)	197, 243, 327, 357, 385, 387, 462, 512, 560
FaqI	GGGAC	2 cut(s)	287, 458
FatI	CATG	3 cut(s)	241, 355, 460
FblI	GTMKAC	1 cut(s)	616
FokI	GGATG	1 cut(s)	121
FspBI	CTAG	3 cut(s)	201, 450, 575
FspI	TGCGCA	1 cut(s)	254
GlaI	GCGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	245, 359, 464
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	2 cut(s)	96, 212
Hpy188III	TCNNGA	3 cut(s)	278, 320, 553
Hpy8I	GTNNAC	1 cut(s)	617
HpyAV	CCTTC	2 cut(s)	125, 217
HpyCH4III	ACNGT	4 cut(s)	56, 136, 191, 472
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	6 cut(s)	81, 143, 179, 185, 295, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	245, 359, 464
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	177, 204, 231, 291, 387, 519, 566
LweI	GCATC	4 cut(s)	99, 264, 419, 484
MaeI	CTAG	3 cut(s)	201, 450, 575
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	109, 112, 429
MfeI	CAATTG	1 cut(s)	70
MluCI	AATT	7 cut(s)	70, 144, 148, 234, 247, 425, 579
MnlI	CCTC	1 cut(s)	163
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	4 cut(s)	87, 147, 261, 628
MspR9I	CCNGG	1 cut(s)	219
MssI	GTTTAAAC	1 cut(s)	88
MunI	CAATTG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	494
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	3 cut(s)	245, 359, 464
NmuCI	GTSAC	1 cut(s)	517
NsbI	TGCGCA	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	169
PmeI	GTTTAAAC	1 cut(s)	88
PshBI	ATTAAT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	571
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	87, 147, 261, 628
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	5 cut(s)	13, 94, 220, 228, 535
SfaNI	GCATC	4 cut(s)	99, 264, 419, 484
SfcI	CTRYAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	245
Sse9I	AATT	7 cut(s)	70, 144, 148, 234, 247, 425, 579
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	3 cut(s)	201, 450, 575
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	4 cut(s)	56, 136, 191, 472
TaiI	ACGT	1 cut(s)	94
TasI	AATT	7 cut(s)	70, 144, 148, 234, 247, 425, 579
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	4 cut(s)	87, 147, 261, 628
Tru9I	TTAA	4 cut(s)	87, 147, 261, 628
TscAI	CASTG	4 cut(s)	139, 171, 475, 526
TseFI	GTSAC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	3 cut(s)	115, 438, 477
TspRI	CASTG	4 cut(s)	139, 171, 475, 526
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	3 cut(s)	234, 425, 579
XceI	RCATGY	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	3 cut(s)	201, 450, 575
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.