pycom02g18520
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013805
Physical Location & Seq
Reverse (-)
16690017 .. 16695458
5442 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18520.1

Sequence Viewer

Length: 648 bp
ATGGATAATGCTAATACTAGAACAACAACAGCAGCAGCAGGTGCAGCAGCTCCAGCAGCATCAACATCAAAGTTCATCAAATGTGTGACAGTTGGAGATGGTGCTGTTGGAAAGACATGCCTTCTCATCTCCTATACTAGCAACACATTTCCCACTGATTATGTTCCAACTGTTTTTGACAACTTCAGTGCCAATGTTTCGGTTGATGGGCAGACTGTTAATTTGGGTCTCTGGGATACTGCTGGTCAAGAAGATTACAACAGATTGAGGCCTCTTAGTTACAGAGGAGCTGATGTGTTCCTTCTTGCCTTTTCTCTCATAAGTAGGCCTAGCTATGAGAACATATCAAAGAAATGGATCCCTGAGCTAAGACATTATGCCTCATCAGTGCCTATCATTCTTGTGGGGACAAAACTAGATCTGAGAGAAGACAGACAATTCCTAATGGATTATCCCGGGGCAAGTACCATCTCTACACAACAGGGTGAAGATTTGAAGAAGCGAATAGGTGCTGTGGCATATATAGAGTGCAGCTCAAAGAAACAGCATAATGTGAAGGCTGTTTTTGACGCAGCTATCAAGTTGGCTCTCCATCCTCCAAAGTCCGAGAAGCAAAAGAGAAAATTGAGCATCTGCAGCGTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0010646 GO:0010928 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0023051 GO:0030427 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070013 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

216

Amino Acids

23.49

Weight (kDa)

9.11

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 27 - 195 1.5e-51 Ras family
Roc PF08477 27 - 140 7.2e-24 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44690
fragaria_vesca FvH4_7g09150 FvH4_7g09150 FvH4_7g09150
malus_domestica MD07G1096600.v1.1
prunus_persica Prupe.2G120300_v2.0.a1 Prupe.2G120300_v2.0.a1
pyrus_communis pycom02g18520 pycom07g07970
rosa_chinensis RchiOBHm_Chr1g0345191
rosa_laevigata RLG00000028848
rosa_multiflora Rmu_sc0011699.1_g000001
rosa_roxburghii Rroxscaffold_4G00309190
rosa_rugosa Rorug01G0176400.1
rosa_samantha Rh1AG194400 Rh1DG191200
rosa_wichuraiana Rw1G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AclWI GGATC 2 cut(s) 352, 365
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 1 cut(s) 466
AgsI TTSAA 1 cut(s) 496
AluBI AGCT 6 cut(s) 50, 290, 333, 367, 534, 575
AluI AGCT 6 cut(s) 50, 290, 333, 367, 534, 575
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 2 cut(s) 352, 365
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 2 cut(s) 269, 326
ApeKI GCWGC 8 cut(s) 32, 35, 44, 47, 56, 531, 572, 636
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AsuC2I CCSGG 2 cut(s) 456, 457
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 455
BamHI GGATCC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 7 cut(s) 44, 47, 56, 59, 68, 543, 584
BccI CCATC 4 cut(s) 92, 200, 476, 600
BciVI GTATCC 1 cut(s) 229
BcnI CCSGG 2 cut(s) 456, 457
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 4 cut(s) 18, 138, 330, 416
BfmI CTRYAG 1 cut(s) 634
BfuAI ACCTGC 1 cut(s) 29
BfuI GTATCC 1 cut(s) 229
BglII AGATCT 1 cut(s) 418
BisI GCNGC 8 cut(s) 33, 36, 45, 48, 57, 532, 573, 637
BlsI GCNGC 8 cut(s) 34, 37, 46, 49, 58, 533, 574, 638
Bme1390I CCNGG 2 cut(s) 456, 457
BmeT110I CYCGRG 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 456, 457
BmsI GCATC 2 cut(s) 68, 639
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpmI CTGGAG 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 456, 457
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 455, 456
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
BseDI CCNNGG 2 cut(s) 455, 456
BseGI GGATG 1 cut(s) 592
BseMII CTCAG 2 cut(s) 354, 413
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 7 cut(s) 44, 47, 56, 59, 68, 543, 584
BsgI GTGCAG 2 cut(s) 63, 550
BshFI GGCC 2 cut(s) 271, 328
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 2 cut(s) 271, 328
Bso31I GGTCTC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 455
Bsp143I GATC 2 cut(s) 357, 418
BspANI GGCC 2 cut(s) 271, 328
BspCNI CTCAG 2 cut(s) 355, 414
BspLI GGNNCC 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 638
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 352, 365
BspTNI GGTCTC 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 455, 456
BssMI GATC 2 cut(s) 357, 418
Bst4CI ACNGT 3 cut(s) 91, 172, 217
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 4 cut(s) 275, 363, 368, 422
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 2 cut(s) 360, 421
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 357, 418
BstMWI GCNNNNNNNGC 5 cut(s) 41, 44, 53, 56, 636
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 454, 455
BstSFI CTRYAG 1 cut(s) 634
BstV1I GCAGC 7 cut(s) 44, 47, 56, 59, 68, 543, 584
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 2 cut(s) 357, 418
BstYI RGATCY 2 cut(s) 357, 418
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 271, 328
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 3 cut(s) 153, 193, 393
BveI ACCTGC 1 cut(s) 29
Cfr9I CCCGGG 1 cut(s) 455
CseI GACGC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 465
CviAII CATG 1 cut(s) 117
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 4 cut(s) 275, 363, 368, 422
DpnI GATC 2 cut(s) 359, 420
DpnII GATC 2 cut(s) 357, 418
Eco147I AGGCCT 2 cut(s) 271, 328
Eco31I GGTCTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 455
FaeI CATG 1 cut(s) 120
FaqI GGGAC 1 cut(s) 421
FatI CATG 1 cut(s) 116
Fnu4HI GCNGC 8 cut(s) 33, 36, 45, 48, 57, 532, 573, 637
FokI GGATG 1 cut(s) 579
Fsp4HI GCNGC 8 cut(s) 33, 36, 45, 48, 57, 532, 573, 637
FspBI CTAG 4 cut(s) 18, 138, 330, 416
GluI GCNGC 8 cut(s) 33, 36, 45, 48, 57, 532, 573, 637
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 2 cut(s) 271, 328
HapII CCGG 1 cut(s) 456
HgaI GACGC 1 cut(s) 578
Hin1II CATG 1 cut(s) 120
HpaII CCGG 1 cut(s) 456
HphI GGTGA 1 cut(s) 497
Hpy188I TCNGA 2 cut(s) 423, 607
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 131, 311, 550
HpyCH4III ACNGT 3 cut(s) 91, 172, 217
HpyCH4V TGCA 3 cut(s) 44, 531, 636
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 44, 53, 56, 636
HpyF3I CTNAG 4 cut(s) 275, 363, 368, 422
Hsp92II CATG 1 cut(s) 120
Kzo9I GATC 2 cut(s) 357, 418
LmnI GCTCC 2 cut(s) 55, 287
LpnPI CCDG 7 cut(s) 24, 66, 217, 228, 375, 467, 469
Lsp1109I GCAGC 7 cut(s) 44, 47, 56, 59, 68, 543, 584
LweI GCATC 2 cut(s) 68, 639
MaeI CTAG 4 cut(s) 18, 138, 330, 416
MaeIII GTNAC 2 cut(s) 85, 278
MalI GATC 2 cut(s) 359, 420
MboI GATC 2 cut(s) 357, 418
MboII GAAGA 4 cut(s) 263, 440, 500, 508
MflI RGATCY 2 cut(s) 357, 418
MluCI AATT 3 cut(s) 220, 437, 623
MmeI TCCRAC 3 cut(s) 73, 88, 191
MnlI CCTC 5 cut(s) 261, 278, 282, 391, 606
MseI TTAA 2 cut(s) 219, 646
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 2 cut(s) 456, 457
MwoI GCNNNNNNNGC 5 cut(s) 41, 44, 53, 56, 636
NciI CCSGG 2 cut(s) 456, 457
NdeII GATC 2 cut(s) 357, 418
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 120
PaqCI CACCTGC 1 cut(s) 29
PceI AGGCCT 2 cut(s) 271, 328
PkrI GCNGC 8 cut(s) 34, 37, 46, 49, 58, 533, 574, 638
PspN4I GGNNCC 1 cut(s) 359
PstI CTGCAG 1 cut(s) 638
PsuI RGATCY 2 cut(s) 357, 418
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 2 cut(s) 219, 646
SatI GCNGC 8 cut(s) 33, 36, 45, 48, 57, 532, 573, 637
Sau3AI GATC 2 cut(s) 357, 418
ScrFI CCNGG 2 cut(s) 456, 457
SetI ASST 8 cut(s) 43, 52, 292, 335, 369, 511, 536, 577
SfaNI GCATC 2 cut(s) 68, 639
SfcI CTRYAG 1 cut(s) 634
SmaI CCCGGG 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 3 cut(s) 220, 437, 623
SseBI AGGCCT 2 cut(s) 271, 328
SspMI CTAG 4 cut(s) 18, 138, 330, 416
StuI AGGCCT 2 cut(s) 271, 328
StyD4I CCNGG 2 cut(s) 454, 455
TaaI ACNGT 3 cut(s) 91, 172, 217
TasI AATT 3 cut(s) 220, 437, 623
Tru1I TTAA 2 cut(s) 219, 646
Tru9I TTAA 2 cut(s) 219, 646
TscAI CASTG 3 cut(s) 160, 193, 393
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 8 cut(s) 32, 35, 44, 47, 56, 531, 572, 636
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 64, 632
TspMI CCCGGG 1 cut(s) 455
TspRI CASTG 3 cut(s) 160, 193, 393
XceI RCATGY 1 cut(s) 120
XmaI CCCGGG 1 cut(s) 455
XspI CTAG 4 cut(s) 18, 138, 330, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.