Rmu_sc0011699.1_g000001
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011699.1
Physical Location & Seq
Forward (+)
145 .. 2424
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011699.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
atggcaactaccaatactacagcaaaagaagcatcttcatcgacatcaaagttcataaaatgtgtgacagttggagatggtgctgttggaaagacttgccttctcatctcttacactagcaacacttttcctactgattatgttccaactgtatttgacaacttcagtgctaatgttttggttgatgggcagactgtgaatctgggtctctgggatactgctggtcaagaagactataacaggttgaggcctcttagttacagaggagctgatatttttcttcttgccttttctctcataagtaggcctagctatgagaacatatcaaagaaatgggttccagagcttagacattatgccccatcagtgcccattattctcgtgggaactaaactagatctgagagaaggcagacagttcgtaatggattaccctggggcatgtaccatctcaacagaacagggtgaagatctaaaaaagagaataggggctgtggcatatatagagtgcagctcgaagacacagcagaacgtgaaggctattttcgatgcagctattaagttggctctctatccttcaaagtccaagaagaaaaagagaaaactgatgccctgcaatgttgtttaa
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

9.22

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44690
fragaria_vesca FvH4_7g09150 FvH4_7g09150 FvH4_7g09150
malus_domestica MD07G1096600.v1.1
prunus_persica Prupe.2G120300_v2.0.a1 Prupe.2G120300_v2.0.a1
pyrus_communis pycom02g18520 pycom07g07970
rosa_chinensis RchiOBHm_Chr1g0345191
rosa_laevigata RLG00000028848
rosa_multiflora Rmu_sc0011699.1_g000001
rosa_roxburghii Rroxscaffold_4G00309190
rosa_rugosa Rorug01G0176400.1
rosa_samantha Rh1AG194400 Rh1DG191200
rosa_wichuraiana Rw1G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 1 cut(s) 445
AgsI TTSAA 1 cut(s) 579
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 5 cut(s) 269, 312, 346, 513, 554
AluI AGCT 5 cut(s) 269, 312, 346, 513, 554
Alw26I GTCTC 1 cut(s) 212
AoxI GGCC 2 cut(s) 248, 305
ApeKI GCWGC 2 cut(s) 510, 551
AsuHPI GGTGA 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 372
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 2 cut(s) 237, 524
BbvI GCAGC 2 cut(s) 522, 563
BccI CCATC 4 cut(s) 71, 179, 370, 455
BcgI CGANNNNNNTGC 4 cut(s) 21, 55, 400, 434
BciT130I CCWGG 1 cut(s) 435
BciVI GTATCC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 3 cut(s) 117, 309, 395
BfmI CTRYAG 1 cut(s) 18
BfuI GTATCC 1 cut(s) 208
BglII AGATCT 2 cut(s) 397, 469
BisI GCNGC 2 cut(s) 511, 552
BlsI GCNGC 2 cut(s) 512, 553
Bme1390I CCNGG 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 3 cut(s) 41, 538, 597
BpiI GAAGAC 2 cut(s) 237, 524
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 433, 434
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 433, 434
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 2 cut(s) 522, 563
BsgI GTGCAG 1 cut(s) 529
BshFI GGCC 2 cut(s) 250, 307
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 2 cut(s) 250, 307
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 397, 469
BspANI GGCC 2 cut(s) 250, 307
BspCNI CTCAG 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 339
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 622
BssECI CCNNGG 2 cut(s) 433, 434
BssMI GATC 2 cut(s) 397, 469
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 4 cut(s) 70, 151, 196, 417
BstDEI CTNAG 3 cut(s) 254, 347, 401
BstKTI GATC 2 cut(s) 400, 472
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 397, 469
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 522, 563
BstV2I GAAGAC 2 cut(s) 237, 524
BstX2I RGATCY 2 cut(s) 397, 469
BstYI RGATCY 2 cut(s) 397, 469
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 250, 307
BtsIMutI CAGTG 2 cut(s) 172, 372
Csp6I GTAC 1 cut(s) 444
CviAII CATG 1 cut(s) 441
CviQI GTAC 1 cut(s) 444
DdeI CTNAG 3 cut(s) 254, 347, 401
DpnI GATC 2 cut(s) 399, 471
DpnII GATC 2 cut(s) 397, 469
Eco147I AGGCCT 2 cut(s) 250, 307
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 433
FaeI CATG 1 cut(s) 444
FatI CATG 1 cut(s) 440
Fnu4HI GCNGC 2 cut(s) 511, 552
Fsp4HI GCNGC 2 cut(s) 511, 552
FspBI CTAG 3 cut(s) 117, 309, 395
GluI GCNGC 2 cut(s) 511, 552
HaeIII GGCC 2 cut(s) 250, 307
Hin1II CATG 1 cut(s) 444
HinfI GANTC 1 cut(s) 199
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 227, 341
HpyAV CCTTC 4 cut(s) 110, 401, 529, 585
HpyCH4III ACNGT 4 cut(s) 70, 151, 196, 417
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 3 cut(s) 510, 551, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 254, 347, 401
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 1 cut(s) 444
Kzo9I GATC 2 cut(s) 397, 469
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 8 cut(s) 188, 196, 207, 226, 354, 420, 446, 447
Lsp1109I GCAGC 2 cut(s) 522, 563
LweI GCATC 3 cut(s) 41, 538, 597
MaeI CTAG 3 cut(s) 117, 309, 395
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 2 cut(s) 64, 257
MalI GATC 2 cut(s) 399, 471
MboI GATC 2 cut(s) 397, 469
MboII GAAGA 6 cut(s) 27, 242, 272, 479, 529, 601
MflI RGATCY 2 cut(s) 397, 469
MhlI GDGCHC 1 cut(s) 372
MmeI TCCRAC 3 cut(s) 52, 67, 170
MnlI CCTC 3 cut(s) 240, 257, 261
MseI TTAA 2 cut(s) 558, 625
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 397, 469
NlaIII CATG 1 cut(s) 444
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 444
PasI CCCWGGG 1 cut(s) 434
PceI AGGCCT 2 cut(s) 250, 307
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 512, 553
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 339
PsuI RGATCY 2 cut(s) 397, 469
RsaI GTAC 1 cut(s) 445
RsaNI GTAC 1 cut(s) 444
SaqAI TTAA 2 cut(s) 558, 625
SatI GCNGC 2 cut(s) 511, 552
Sau3AI GATC 2 cut(s) 397, 469
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 372
SetI ASST 7 cut(s) 245, 271, 314, 348, 515, 534, 556
SfaNI GCATC 3 cut(s) 41, 538, 597
SfcI CTRYAG 1 cut(s) 18
SseBI AGGCCT 2 cut(s) 250, 307
SspMI CTAG 3 cut(s) 117, 309, 395
StuI AGGCCT 2 cut(s) 250, 307
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 4 cut(s) 70, 151, 196, 417
TaiI ACGT 1 cut(s) 534
TaqI TCGA 3 cut(s) 41, 515, 546
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 558, 625
Tru9I TTAA 2 cut(s) 558, 625
TscAI CASTG 2 cut(s) 172, 372
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 510, 551
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 27, 43
TspRI CASTG 2 cut(s) 172, 372
XceI RCATGY 1 cut(s) 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 3 cut(s) 117, 309, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.