pycom07g07970
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013805
Physical Location & Seq
Forward (+)
7349951 .. 7352641
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07970.4

Sequence Viewer

Length: 627 bp
ATGGCTAATGCTAGAACAACAGCAGCAGGTGCAGCAGCATCAACATCAAAGTTCATCAAATGTGTGACAGTTGGAGATGGTGCTGTTGGAAAGACATGCCTTCTCATCTCCTACACTAGCAACACTTTCCCTACCGATTATGTTCCAACTGTTTTTGACAACTTCAGTGCCAACGTTTTGGTTGATGGGCAGACTGTAAATTTGGGTCTCTGGGATACTGCTGGTCAAGAAGATTACAACAGATTGAGGCCTCTTAGTTACAGAGGAGCTGATGTGTTCCTTCTTGCCTTTTCCCTCATAAGTAGGCCTAGCTATGAGAACATATCAAAGAAATGGATCCCTGAGCTAAGACATTATGCCCCATCAGTGCCTATCATTCTTGTAGGGACAAAACTAGATCTGAGGGAAGACAAACAATTCTTAATGGATTACCCCGGGGCAGGTACCATCTCTACACAACAGGGTGAAGATTTGAAGAAGCAAATAGGTGCTGTGTCGTACATAGAGTGCAGCTCAAAGAAACAGCATAATGTGAAGACTGTTTTTGATGCAGCTATCAAGTTGGCTCTCTATCCTCCAAAGTCCGAGAAGCAAAAGAGGAAATTGAGCATCTGCAGCGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009966 GO:0010646 GO:0010928 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0023051 GO:0030427 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0070013 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

209

Amino Acids

22.82

Weight (kDa)

9.08

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44690
fragaria_vesca FvH4_7g09150 FvH4_7g09150 FvH4_7g09150
malus_domestica MD07G1096600.v1.1
prunus_persica Prupe.2G120300_v2.0.a1 Prupe.2G120300_v2.0.a1
pyrus_communis pycom02g18520 pycom07g07970
rosa_chinensis RchiOBHm_Chr1g0345191
rosa_laevigata RLG00000028848
rosa_multiflora Rmu_sc0011699.1_g000001
rosa_roxburghii Rroxscaffold_4G00309190
rosa_rugosa Rorug01G0176400.1
rosa_samantha Rh1AG194400 Rh1DG191200
rosa_wichuraiana Rw1G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 2 cut(s) 17, 431
Acc65I GGTACC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 443
AclI AACGTT 1 cut(s) 174
AclWI GGATC 2 cut(s) 331, 344
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 148
AfaI GTAC 2 cut(s) 445, 500
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 475
AluBI AGCT 5 cut(s) 269, 312, 346, 513, 554
AluI AGCT 5 cut(s) 269, 312, 346, 513, 554
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 331, 344
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 2 cut(s) 248, 305
ApeKI GCWGC 6 cut(s) 23, 32, 35, 510, 551, 615
ApoI RAATTY 1 cut(s) 199
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
Asp718I GGTACC 1 cut(s) 443
AsuC2I CCSGG 2 cut(s) 435, 436
AsuHPI GGTGA 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 434
BamHI GGATCC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 414, 542
BbvI GCAGC 5 cut(s) 35, 44, 47, 522, 563
BccI CCATC 4 cut(s) 71, 179, 370, 455
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 2 cut(s) 435, 436
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 4 cut(s) 12, 117, 309, 395
BfmI CTRYAG 1 cut(s) 613
BfuAI ACCTGC 2 cut(s) 17, 431
BfuI GTATCC 1 cut(s) 208
BglII AGATCT 1 cut(s) 397
BisI GCNGC 6 cut(s) 24, 33, 36, 511, 552, 616
BlsI GCNGC 6 cut(s) 25, 34, 37, 512, 553, 617
Bme1390I CCNGG 2 cut(s) 435, 436
BmeT110I CYCGRG 1 cut(s) 434
BmiI GGNNCC 2 cut(s) 338, 445
BmrFI CCNGG 2 cut(s) 435, 436
BmsI GCATC 3 cut(s) 47, 538, 618
BpiI GAAGAC 2 cut(s) 414, 542
BplI GAGNNNNNCTC 2 cut(s) 497, 529
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 435, 436
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 433, 434, 435
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 433, 434, 435
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 2 cut(s) 333, 392
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 5 cut(s) 35, 44, 47, 522, 563
BsgI GTGCAG 2 cut(s) 51, 529
BshFI GGCC 2 cut(s) 250, 307
BshNI GGYRCC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 2 cut(s) 250, 307
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 434
Bsp143I GATC 2 cut(s) 336, 397
BspANI GGCC 2 cut(s) 250, 307
BspCNI CTCAG 2 cut(s) 334, 393
BspLI GGNNCC 2 cut(s) 338, 445
BspMAI CTGCAG 1 cut(s) 617
BspMI ACCTGC 2 cut(s) 17, 431
BspPI GGATC 2 cut(s) 331, 344
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 433, 434, 435
BssMI GATC 2 cut(s) 336, 397
Bst4CI ACNGT 4 cut(s) 70, 151, 196, 541
BstAPI GCANNNNNTGC 1 cut(s) 29
BstDEI CTNAG 4 cut(s) 254, 342, 347, 401
BstKTI GATC 2 cut(s) 339, 400
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 336, 397
BstMWI GCNNNNNNNGC 3 cut(s) 29, 32, 615
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 433, 434
BstSFI CTRYAG 1 cut(s) 613
BstV1I GCAGC 5 cut(s) 35, 44, 47, 522, 563
BstV2I GAAGAC 2 cut(s) 414, 542
BstX2I RGATCY 2 cut(s) 336, 397
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 2 cut(s) 336, 397
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 250, 307
BtsIMutI CAGTG 2 cut(s) 172, 372
BveI ACCTGC 2 cut(s) 17, 431
Cfr9I CCCGGG 1 cut(s) 434
Csp6I GTAC 2 cut(s) 444, 499
CviAII CATG 1 cut(s) 96
CviJI RGCY 9 cut(s) 5, 250, 269, 307, 312, 346, 513, 554, 566
CviKI_1 RGCY 9 cut(s) 5, 250, 269, 307, 312, 346, 513, 554, 566
CviQI GTAC 2 cut(s) 444, 499
DdeI CTNAG 4 cut(s) 254, 342, 347, 401
DpnI GATC 2 cut(s) 338, 399
DpnII GATC 2 cut(s) 336, 397
Eco147I AGGCCT 2 cut(s) 250, 307
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 434
FaeI CATG 1 cut(s) 99
FaiI YATR 8 cut(s) 97, 141, 299, 315, 323, 357, 503, 528
FaqI GGGAC 1 cut(s) 400
FatI CATG 1 cut(s) 95
Fnu4HI GCNGC 6 cut(s) 24, 33, 36, 511, 552, 616
Fsp4HI GCNGC 6 cut(s) 24, 33, 36, 511, 552, 616
FspBI CTAG 4 cut(s) 12, 117, 309, 395
GluI GCNGC 6 cut(s) 24, 33, 36, 511, 552, 616
HaeIII GGCC 2 cut(s) 250, 307
HapII CCGG 1 cut(s) 435
Hin1II CATG 1 cut(s) 99
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 2 cut(s) 402, 586
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 110, 290
HpyCH4III ACNGT 4 cut(s) 70, 151, 196, 541
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 32, 510, 551, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 32, 615
HpyF3I CTNAG 4 cut(s) 254, 342, 347, 401
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 1 cut(s) 99
KpnI GGTACC 1 cut(s) 447
Kzo9I GATC 2 cut(s) 336, 397
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 7 cut(s) 12, 196, 207, 354, 426, 446, 448
Lsp1109I GCAGC 5 cut(s) 35, 44, 47, 522, 563
LweI GCATC 3 cut(s) 47, 538, 618
MaeI CTAG 4 cut(s) 12, 117, 309, 395
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 64, 257
MalI GATC 2 cut(s) 338, 399
MboI GATC 2 cut(s) 336, 397
MboII GAAGA 5 cut(s) 242, 419, 479, 487, 547
MflI RGATCY 2 cut(s) 336, 397
MluCI AATT 3 cut(s) 199, 416, 602
MmeI TCCRAC 3 cut(s) 52, 67, 170
MnlI CCTC 7 cut(s) 240, 257, 261, 305, 396, 585, 591
MseI TTAA 2 cut(s) 422, 625
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 2 cut(s) 435, 436
MwoI GCNNNNNNNGC 3 cut(s) 29, 32, 615
NciI CCSGG 2 cut(s) 435, 436
NdeII GATC 2 cut(s) 336, 397
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 338, 445
NmuCI GTSAC 1 cut(s) 64
NspI RCATGY 1 cut(s) 99
PaqCI CACCTGC 1 cut(s) 17
PceI AGGCCT 2 cut(s) 250, 307
PkrI GCNGC 6 cut(s) 25, 34, 37, 512, 553, 617
Psp1406I AACGTT 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 338, 445
PstI CTGCAG 1 cut(s) 617
PsuI RGATCY 2 cut(s) 336, 397
RsaI GTAC 2 cut(s) 445, 500
RsaNI GTAC 2 cut(s) 444, 499
SaqAI TTAA 2 cut(s) 422, 625
SatI GCNGC 6 cut(s) 24, 33, 36, 511, 552, 616
Sau3AI GATC 2 cut(s) 336, 397
ScrFI CCNGG 2 cut(s) 435, 436
SetI ASST 9 cut(s) 31, 177, 271, 314, 348, 445, 490, 515, 556
SfaNI GCATC 3 cut(s) 47, 538, 618
SfcI CTRYAG 1 cut(s) 613
SmaI CCCGGG 1 cut(s) 436
Sse9I AATT 3 cut(s) 199, 416, 602
SseBI AGGCCT 2 cut(s) 250, 307
SspMI CTAG 4 cut(s) 12, 117, 309, 395
StuI AGGCCT 2 cut(s) 250, 307
StyD4I CCNGG 2 cut(s) 433, 434
TaaI ACNGT 4 cut(s) 70, 151, 196, 541
TaiI ACGT 1 cut(s) 177
TasI AATT 3 cut(s) 199, 416, 602
Tru1I TTAA 2 cut(s) 422, 625
Tru9I TTAA 2 cut(s) 422, 625
TscAI CASTG 2 cut(s) 172, 372
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 6 cut(s) 23, 32, 35, 510, 551, 615
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 43
TspMI CCCGGG 1 cut(s) 434
TspRI CASTG 2 cut(s) 172, 372
XapI RAATTY 1 cut(s) 199
XceI RCATGY 1 cut(s) 99
XmaI CCCGGG 1 cut(s) 434
XspI CTAG 4 cut(s) 12, 117, 309, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.