Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0021256

Physical Location & Seq

Genomic Coordinates Reverse (-)

17002822 .. 17007334

Gene Structure 4513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAAGGAGGAGGCGATTTGGATACCCAAATAGAGAAGTTGCTGAATGTAGAGAAGCAAATGAGGCTTGCTGGTGATGTAGCGGGAACCAAGAAGGCGGCCACTGACATTCTTGAACTCTGCTTTAAAGCGGGTGCTTGGAAGACTCTCAATGATCAGATTGTTGTATTATCCAAACGTCGTGGTCAGCTCAAGCAGGCTGTGACTGCAATGGTCCAGCAAGCAATGCAATATATTGATCAGACACCAGATATTGAAACTCGTGTAGAGCTTATTAAAACACTGAATAATGTTTCTGCTGGGAAGATATATGTTGAAATTGAGAGAGCCCGGTTAATCAAGAGACTTGCAAAGATTAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGCGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAGTTCGGTTGTGTTTAGACCGTCAAGATTATGTTCGTGCTCAAATACTCTCGAGGAAGATCAGTCCAAGAGTTTTTGATATTGATGCTTCAAAAGAAAAGAAAAAACCAAAAGAAGGTGACAATGTTGTTGAAGAAGCTCCTGCTGATATACCATCGCTCTTGGAGTTGAAGCGATCGATCTACTATGAATTAATGATACGGTATTATTCTCACAACAATGATTACCTTGAGATTTGCCGTTGCTACAAGGCGATATACGATATTCCTTCTGTTAAGGAGAATTCAGCTCAGTGGATACCGGTCTTGAGGAAGATCTGTTGGTACTTGGTTCTGGCTCCATATCGATCCAATGCAGTCAAGCCTTCTCAATTCCATCCTGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

285

Amino Acids

32.31

Weight (kDa)

8.63

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	11 - 188	4.8e-68	PSMD12/CSN4, N-terminal
PSMD12-CSN4_N	PF22241	215 - 249	2.9e-08	PSMD12/CSN4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021256)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g18950
rosa_multiflora	Rmu_co8406097.1_g000001
rosa_samantha	Rh1AG142400 Rh1CG134300 Rh1DG147300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	4 cut(s)	83, 98, 131, 410
AclWI	GGATC	1 cut(s)	807
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	748
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgeI	ACCGGT	1 cut(s)	766
AgsI	TTSAA	7 cut(s)	116, 257, 317, 464, 558, 599, 637
AjnI	CCWGG	1 cut(s)	844
AluBI	AGCT	5 cut(s)	190, 271, 386, 605, 755
AluI	AGCT	5 cut(s)	190, 271, 386, 605, 755
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	807
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	748
AseI	ATTAAT	1 cut(s)	659
AsiGI	ACCGGT	1 cut(s)	766
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	86, 596
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	628, 849
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	2 cut(s)	16, 756
BclI	TGATCA	2 cut(s)	154, 238
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	429
BfuI	GTATCC	2 cut(s)	16, 756
BglII	AGATCT	1 cut(s)	780
BisI	GCNGC	2 cut(s)	99, 387
BlsI	GCNGC	2 cut(s)	100, 388
Bme1390I	CCNGG	2 cut(s)	331, 846
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	3 cut(s)	88, 427, 804
BmrFI	CCNGG	2 cut(s)	331, 846
BmsI	GCATC	2 cut(s)	387, 541
BpiI	GAAGAC	1 cut(s)	149
BpuEI	CTTGAG	3 cut(s)	176, 716, 793
BpuMI	CCSGG	1 cut(s)	331
Bsa29I	ATCGAT	2 cut(s)	644, 811
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	766
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	766
Bse3DI	GCAATG	2 cut(s)	216, 231
BseBI	CCWGG	1 cut(s)	846
BseCI	ATCGAT	2 cut(s)	644, 811
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	2 cut(s)	216, 231
BseMII	CTCAG	2 cut(s)	432, 770
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	644
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	425
BshTI	ACCGGT	1 cut(s)	766
BshVI	ATCGAT	2 cut(s)	644, 811
BsiEI	CGRYCG	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	331, 767
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	331, 508
Bsp143I	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	4 cut(s)	83, 98, 131, 410
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	433, 769
BspDI	ATCGAT	2 cut(s)	644, 811
BspLI	GGNNCC	3 cut(s)	88, 427, 804
BspPI	GGATC	1 cut(s)	807
BspQI	GCTCTTC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	425
BsrDI	GCAATG	2 cut(s)	216, 231
BsrFI	RCCGGY	1 cut(s)	766
BssAI	RCCGGY	1 cut(s)	766
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
BssNI	GRCGYC	1 cut(s)	426
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	488, 669
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	69, 198, 222
BstDEI	CTNAG	2 cut(s)	441, 756
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	841
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	7 cut(s)	157, 241, 528, 644, 648, 783, 815
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
BstMCI	CGRYCG	1 cut(s)	644
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 206, 226, 386
BstNI	CCWGG	1 cut(s)	846
BstSCI	CCNGG	2 cut(s)	329, 844
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	780
BstYI	RGATCY	1 cut(s)	780
Bsu15I	ATCGAT	2 cut(s)	644, 811
BsuI	GTATCC	2 cut(s)	16, 756
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	2 cut(s)	644, 811
BtgI	CCRYGG	1 cut(s)	429
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	1 cut(s)	841
BtsIMutI	CAGTG	3 cut(s)	102, 281, 764
Cac8I	GCNNGC	3 cut(s)	69, 198, 222
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	766
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	2 cut(s)	644, 811
Csp6I	GTAC	1 cut(s)	790
CspAI	ACCGGT	1 cut(s)	766
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	2 cut(s)	441, 756
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	7 cut(s)	156, 240, 527, 643, 647, 782, 814
DpnII	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
DraI	TTTAAA	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	517
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	331
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	1 cut(s)	433
FaiI	YATR	9 cut(s)	234, 310, 312, 431, 498, 617, 654, 724, 808
FatI	CATG	1 cut(s)	429
FauI	CCCGC	2 cut(s)	76, 124
FbaI	TGATCA	2 cut(s)	154, 238
Fnu4HI	GCNGC	2 cut(s)	99, 387
FokI	GGATG	1 cut(s)	828
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	99, 387
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	2 cut(s)	99, 387
GsaI	CCCAGC	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	331, 767
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	331, 767
HphI	GGTGA	2 cut(s)	86, 596
Hpy188I	TCNGA	2 cut(s)	159, 243
Hpy188III	TCNNGA	6 cut(s)	113, 340, 461, 491, 517, 772
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	4 cut(s)	88, 575, 744, 840
HpyCH4III	ACNGT	2 cut(s)	488, 669
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	209, 229, 350, 400, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 206, 226, 386
HpyF3I	CTNAG	2 cut(s)	441, 756
HpySE526I	ACGT	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	433
HspAI	GCGC	1 cut(s)	426
KasI	GGCGCC	1 cut(s)	425
Ksp22I	TGATCA	2 cut(s)	154, 238
Kzo9I	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	610, 808
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	387, 541
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	202, 584
MalI	GATC	7 cut(s)	156, 240, 527, 643, 647, 782, 814
MboI	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
MboII	GAAGA	7 cut(s)	154, 316, 374, 457, 535, 611, 790
MflI	RGATCY	1 cut(s)	780
MhlI	GDGCHC	2 cut(s)	331, 508
MluCI	AATT	5 cut(s)	318, 405, 656, 748, 836
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	5 cut(s)	5, 57, 513, 768, 842
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	6 cut(s)	126, 276, 335, 357, 659, 741
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	2 cut(s)	331, 767
MspR9I	CCNGG	2 cut(s)	331, 846
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	4 cut(s)	64, 206, 226, 386
NarI	GGCGCC	1 cut(s)	426
NciI	CCSGG	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	3 cut(s)	88, 427, 804
NmuCI	GTSAC	2 cut(s)	202, 584
PaeR7I	CTCGAG	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	468
PfoI	TCCNGGA	1 cut(s)	844
PinAI	ACCGGT	1 cut(s)	766
PkrI	GCNGC	2 cut(s)	100, 388
Ple19I	CGATCG	1 cut(s)	644
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	139
PshBI	ATTAAT	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	844
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	3 cut(s)	88, 427, 804
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	780
PvuI	CGATCG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	1 cut(s)	684
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	6 cut(s)	126, 276, 335, 357, 659, 741
SatI	GCNGC	2 cut(s)	99, 387
Sau3AI	GATC	7 cut(s)	154, 238, 525, 641, 645, 780, 812
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	331, 846
SduI	GDGCHC	2 cut(s)	331, 508
SetI	ASST	8 cut(s)	181, 192, 273, 388, 586, 607, 696, 757
SfaNI	GCATC	2 cut(s)	387, 541
SfoI	GGCGCC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	4 cut(s)	191, 517, 695, 772
SmoI	CTYRAG	4 cut(s)	191, 517, 695, 772
Sse9I	AATT	5 cut(s)	318, 405, 656, 748, 836
SsiI	CCGC	4 cut(s)	83, 98, 131, 410
SspDI	GGCGCC	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	329, 844
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	488, 669
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	3 cut(s)	518, 644, 811
TasI	AATT	5 cut(s)	318, 405, 656, 748, 836
TauI	GCSGC	1 cut(s)	101
Tru1I	TTAA	6 cut(s)	126, 276, 335, 357, 659, 741
Tru9I	TTAA	6 cut(s)	126, 276, 335, 357, 659, 741
TscAI	CASTG	3 cut(s)	109, 288, 764
TseFI	GTSAC	2 cut(s)	202, 584
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	202, 584
TspDTI	ATGAA	2 cut(s)	445, 669
TspRI	CASTG	3 cut(s)	109, 288, 764
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	659
XapI	RAATTY	1 cut(s)	748
XhoI	CTCGAG	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.