Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406097.1

Orthogroup ID

OG0021256

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 871

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

atgattgttattgtgatcgggtttgtttctatgcaggccgtaactgcattggtccagcaagcaatgcaatatattgatcagacacgtgatcttgaaactcgtatagagctgattaaaacactaaataatgtttctgctgggaagatatatgttgaaattgagagagcacggttaatcaaaagacttgcaaagatcaaggaagagcaagggcttattgctgaagctgctgatttgatgcaagaaactgcggtggaaacatttggtgctatggcaaaaactgagaagattgcattcattcttgaacaagttcgtttgtgtgaagaccgtcaggattatgttcgtgctcaaatactgtcgaggaagattagtccaagggtgtttgatgttgatacttcaaaagaaaagaaaaaacccaaggaaggtgataatgttgttgaagaagctcctgctgatgtaccatcgctcttggagttgaagcggatctactatgaattaatgatacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

168

Amino Acids

19.22

Weight (kDa)

5.74

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021256)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g18950
rosa_multiflora	Rmu_co8406097.1_g000001
rosa_samantha	Rh1AG142400 Rh1CG134300 Rh1DG147300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	248, 478
AclWI	GGATC	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	240
AcvI	CACGTG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	6 cut(s)	95, 155, 302, 396, 437, 475
AluBI	AGCT	3 cut(s)	109, 224, 443
AluI	AGCT	3 cut(s)	109, 224, 443
Alw21I	GWGCWC	2 cut(s)	169, 346
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	494
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	52
BarI	GAAGNNNNNNTAC	2 cut(s)	467, 499
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	169, 346
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	466
BceAI	ACGGC	1 cut(s)	23
BclI	TGATCA	1 cut(s)	76
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	371, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	371, 414
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	169, 346
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	169, 346
Bsp143I	GATC	5 cut(s)	15, 76, 88, 192, 480
BspACI	CCGC	2 cut(s)	248, 478
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	488
BspQI	GCTCTTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	371, 414
BssMI	GATC	5 cut(s)	15, 76, 88, 192, 480
BssT1I	CCWWGG	2 cut(s)	371, 414
Bst4CI	ACNGT	3 cut(s)	171, 326, 354
Bst6I	CTCTTC	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	36, 60
BstDEI	CTNAG	1 cut(s)	279
BstKTI	GATC	5 cut(s)	18, 79, 91, 195, 483
BstMBI	GATC	5 cut(s)	15, 76, 88, 192, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 64, 224
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	36, 60
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	455
CviJI	RGCY	5 cut(s)	38, 109, 211, 224, 443
CviKI_1	RGCY	5 cut(s)	38, 109, 211, 224, 443
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	17, 78, 90, 194, 482
DpnII	GATC	5 cut(s)	15, 76, 88, 192, 480
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	371, 414
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	240
Eco72I	CACGTG	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	371, 414
ErhI	CCWWGG	2 cut(s)	371, 414
FaiI	YATR	8 cut(s)	32, 72, 104, 148, 150, 269, 336, 489
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	3 cut(s)	92, 299, 329
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	3 cut(s)	171, 326, 354
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	6 cut(s)	34, 47, 67, 188, 238, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 64, 224
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	15, 76, 88, 192, 480
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	5 cut(s)	20, 68, 123, 314, 459
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	5 cut(s)	17, 78, 90, 194, 482
MboI	GATC	5 cut(s)	15, 76, 88, 192, 480
MboII	GAAGA	6 cut(s)	154, 212, 295, 332, 373, 449
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	2 cut(s)	169, 346
MluCI	AATT	2 cut(s)	156, 491
MnlI	CCTC	1 cut(s)	351
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	3 cut(s)	114, 173, 494
Mva1269I	GAATGC	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	44, 64, 224
NdeII	GATC	5 cut(s)	15, 76, 88, 192, 480
PciSI	GCTCTTC	1 cut(s)	195
PctI	GAATGC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	226
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	494
PspCI	CACGTG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	114, 173, 494
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	5 cut(s)	15, 76, 88, 192, 480
Sau96I	GGNCC	1 cut(s)	52
SduI	GDGCHC	2 cut(s)	169, 346
SetI	ASST	5 cut(s)	88, 111, 226, 424, 445
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	156, 491
SsiI	CCGC	2 cut(s)	248, 478
StyI	CCWWGG	2 cut(s)	371, 414
TaaI	ACNGT	3 cut(s)	171, 326, 354
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	356
TasI	AATT	2 cut(s)	156, 491
Tru1I	TTAA	3 cut(s)	114, 173, 494
Tru9I	TTAA	3 cut(s)	114, 173, 494
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.