Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0021256

Physical Location & Seq

Genomic Coordinates Forward (+)

26927474 .. 26954121

Gene Structure 26648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG142400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAGGAGGAAGTGACTTAGATGCCCAAATAGAGAAATTGCTGAATGTGGAGAAACAAATGAGGCTCTCTGGTGATGTGGCGGGAACCAAGAAGGCTGTCACTGACATTCTTGAGCTTTGCTTTAAAGCAGGTGCTTGGAAGACCCTCAATGACCAGATTCTGGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGCCGTAACTGCATTGGTCCAGCAAGCAATGCAATATATTGATCAGACACCTGATCTTGAAACTCGTATAGAGCTGATTAAAACACTAAATAATGTTTCTGCGGGGAAGATATATGTTGAAATTGAGAGAGCACGGTTAATCAAAAGACTTGCAAAGATCAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAACTGCGGTTCGTTTGTGTGAAGACCGTCAGGATTATGTTCGTGCTCAAATACTGTCGAGGAAGATTAGTCCAAGGGTGTTTGATGTTGATGCTTCAAAAGAAAAGAAAAAACCCAAGGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCTGATGTACCATCGCTCTTGGAGTTGAAGCGGATCTACTATGAATTAATGATACGAAAAACGTCTTTGAACGAGCGCAAGGGTAGATTTTATCGGTCCACAGCAGCATTGGCAGCTGGATATCCTCCCGGGTTTCCTGGTTTTCCTCCTGGGCCAACTGGTTTCTCCACTTCCTGTGGAAGTCTTCGAAAGATATCCACAGTCAAGTATGAGGATTCCATGTCCACTAAGCGCAGAGCTGCCTTCTTACTCTCATCACGGAACCTTTCCAATGCTTCATTAGCTGCAGCAGCTATTTCAGCTTGCGGAGTCGGAAAACCGTCTCAATTCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

295

Amino Acids

32.6

Weight (kDa)

9.42

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	11 - 136	5.6e-44	PSMD12/CSN4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021256)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g18950
rosa_multiflora	Rmu_co8406097.1_g000001
rosa_samantha	Rh1AG142400 Rh1CG134300 Rh1DG147300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	5 cut(s)	83, 299, 410, 583, 858
AclWI	GGATC	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	2 cut(s)	163, 524
AgsI	TTSAA	6 cut(s)	257, 317, 501, 542, 580, 622
AjnI	CCWGG	2 cut(s)	688, 700
Alw21I	GWGCWC	2 cut(s)	331, 451
Alw26I	GTCTC	1 cut(s)	879
AlwI	GGATC	1 cut(s)	593
AlwNI	CAGNNNCTG	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	198, 704
ApeKI	GCWGC	7 cut(s)	386, 656, 665, 791, 836, 839, 842
AseI	ATTAAT	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	630, 786
AspS9I	GGNCC	3 cut(s)	214, 648, 704
AsuC2I	CCSGG	2 cut(s)	681, 682
AsuHPI	GGTGA	2 cut(s)	86, 539
AsuII	TTCGAA	1 cut(s)	739
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	214, 648
BarI	GAAGNNNNNNTAC	2 cut(s)	572, 604
BbsI	GAAGAC	3 cut(s)	149, 432, 728
Bbv12I	GWGCWC	2 cut(s)	331, 451
BbvI	GCAGC	7 cut(s)	373, 668, 677, 778, 823, 851, 854
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	2 cut(s)	165, 185
BciT130I	CCWGG	2 cut(s)	690, 702
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	681, 682
BcoDI	GTCTC	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	837
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	7 cut(s)	387, 657, 666, 792, 837, 840, 843
BlsI	GCNGC	7 cut(s)	388, 658, 667, 793, 838, 841, 844
Bme1390I	CCNGG	4 cut(s)	681, 682, 690, 702
Bme18I	GGWCC	2 cut(s)	214, 648
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	3 cut(s)	214, 648, 704
BmiI	GGNNCC	2 cut(s)	88, 815
BmrFI	CCNGG	4 cut(s)	681, 682, 690, 702
BmsI	GCATC	3 cut(s)	13, 387, 484
BpiI	GAAGAC	3 cut(s)	149, 432, 728
Bpu14I	TTCGAA	1 cut(s)	739
BpuEI	CTTGAG	2 cut(s)	134, 176
BpuMI	CCSGG	2 cut(s)	681, 682
BsaJI	CCNNGG	5 cut(s)	181, 476, 519, 680, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 524
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	690, 702
BseDI	CCNNGG	5 cut(s)	181, 476, 519, 680, 701
BseLI	CCNNNNNNNGG	2 cut(s)	163, 524
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	715
BseXI	GCAGC	7 cut(s)	373, 668, 677, 778, 823, 851, 854
BshFI	GGCC	2 cut(s)	200, 706
BsiHKAI	GWGCWC	2 cut(s)	331, 451
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	1 cut(s)	681
BslI	CCNNNNNNNGG	2 cut(s)	163, 524
BsmAI	GTCTC	1 cut(s)	879
BsmBI	CGTCTC	1 cut(s)	879
BsnI	GGCC	2 cut(s)	200, 706
BsoBI	CYCGRG	1 cut(s)	680
Bsp119I	TTCGAA	1 cut(s)	739
Bsp1286I	GDGCHC	2 cut(s)	331, 451
Bsp143I	GATC	4 cut(s)	238, 250, 354, 585
BspACI	CCGC	5 cut(s)	83, 299, 410, 583, 858
BspANI	GGCC	2 cut(s)	200, 706
BspLI	GGNNCC	2 cut(s)	88, 815
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	593
BspQI	GCTCTTC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	739
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	715
BssECI	CCNNGG	5 cut(s)	181, 476, 519, 680, 701
BssMI	GATC	4 cut(s)	238, 250, 354, 585
BssT1I	CCWWGG	2 cut(s)	476, 519
Bst2UI	CCWGG	2 cut(s)	690, 702
Bst4CI	ACNGT	5 cut(s)	333, 431, 459, 754, 873
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	739
BstC8I	GCNNGC	3 cut(s)	198, 222, 856
BstDEI	CTNAG	2 cut(s)	19, 780
BstDSI	CCRYGG	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	630, 786
BstKTI	GATC	4 cut(s)	241, 253, 357, 588
BstMAI	GTCTC	1 cut(s)	879
BstMBI	GATC	4 cut(s)	238, 250, 354, 585
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 226, 386, 662, 665, 833, 842, 851
BstNI	CCWGG	2 cut(s)	690, 702
BstSCI	CCNGG	4 cut(s)	679, 680, 688, 700
BstSFI	CTRYAG	1 cut(s)	837
BstV1I	GCAGC	7 cut(s)	373, 668, 677, 778, 823, 851, 854
BstV2I	GAAGAC	3 cut(s)	149, 432, 728
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	2 cut(s)	200, 706
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	198, 222, 856
CaiI	CAGNNNCTG	1 cut(s)	163
CfoI	GCGC	2 cut(s)	630, 786
Cfr13I	GGNCC	3 cut(s)	214, 648, 704
Cfr9I	CCCGGG	1 cut(s)	680
Csp6I	GTAC	1 cut(s)	560
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	1 cut(s)	772
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	2 cut(s)	19, 780
DpnI	GATC	4 cut(s)	240, 252, 356, 587
DpnII	GATC	4 cut(s)	238, 250, 354, 585
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	476, 519
Eco32I	GATATC	2 cut(s)	674, 747
Eco47I	GGWCC	2 cut(s)	214, 648
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	688, 700
EcoRV	GATATC	2 cut(s)	674, 747
EcoT14I	CCWWGG	2 cut(s)	476, 519
ErhI	CCWWGG	2 cut(s)	476, 519
Esp3I	CGTCTC	1 cut(s)	879
FaeI	CATG	1 cut(s)	775
FaiI	YATR	9 cut(s)	234, 266, 310, 312, 441, 594, 762, 773, 886
FatI	CATG	1 cut(s)	771
FauI	CCCGC	2 cut(s)	76, 292
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	7 cut(s)	387, 657, 666, 792, 837, 840, 843
Fsp4HI	GCNGC	7 cut(s)	387, 657, 666, 792, 837, 840, 843
GlaI	GCGC	2 cut(s)	629, 785
GluI	GCNGC	7 cut(s)	387, 657, 666, 792, 837, 840, 843
HaeIII	GGCC	2 cut(s)	200, 706
HapII	CCGG	1 cut(s)	681
HhaI	GCGC	2 cut(s)	630, 786
Hin1II	CATG	1 cut(s)	775
Hin6I	GCGC	2 cut(s)	628, 784
HinP1I	GCGC	2 cut(s)	628, 784
HinfI	GANTC	3 cut(s)	160, 767, 861
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	2 cut(s)	86, 539
Hpy166II	GTNNAC	2 cut(s)	651, 777
Hpy188I	TCNGA	2 cut(s)	243, 866
Hpy188III	TCNNGA	3 cut(s)	113, 254, 434
Hpy8I	GTNNAC	2 cut(s)	651, 777
HpyAV	CCTTC	3 cut(s)	88, 518, 805
HpyCH4III	ACNGT	5 cut(s)	333, 431, 459, 754, 873
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	5 cut(s)	209, 229, 350, 400, 839
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 226, 386, 662, 665, 833, 842, 851
HpyF3I	CTNAG	2 cut(s)	19, 780
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	1 cut(s)	775
HspAI	GCGC	2 cut(s)	628, 784
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	238, 250, 354, 585
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	7 cut(s)	373, 668, 677, 778, 823, 851, 854
LweI	GCATC	3 cut(s)	13, 387, 484
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	3 cut(s)	14, 100, 202
MalI	GATC	4 cut(s)	240, 252, 356, 587
MboI	GATC	4 cut(s)	238, 250, 354, 585
MboII	GAAGA	7 cut(s)	154, 316, 374, 437, 478, 554, 728
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	331, 451
MluCI	AATT	4 cut(s)	38, 318, 596, 878
MlyI	GAGTC	1 cut(s)	870
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	6 cut(s)	57, 158, 456, 687, 708, 757
MseI	TTAA	4 cut(s)	126, 276, 335, 599
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	4 cut(s)	681, 682, 690, 702
MvaI	CCWGG	2 cut(s)	690, 702
MwoI	GCNNNNNNNGC	8 cut(s)	206, 226, 386, 662, 665, 833, 842, 851
NciI	CCSGG	2 cut(s)	681, 682
NdeII	GATC	4 cut(s)	238, 250, 354, 585
NlaIII	CATG	1 cut(s)	775
NlaIV	GGNNCC	2 cut(s)	88, 815
NmuCI	GTSAC	2 cut(s)	14, 100
NspV	TTCGAA	1 cut(s)	739
PaqCI	CACCTGC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	160, 767
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	7 cut(s)	388, 658, 667, 793, 838, 841, 844
PleI	GAGTC	1 cut(s)	869
PpsI	GAGTC	1 cut(s)	869
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	688, 700
PspGI	CCWGG	2 cut(s)	688, 700
PspN4I	GGNNCC	2 cut(s)	88, 815
PspPI	GGNCC	3 cut(s)	214, 648, 704
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	126, 276, 335, 599
SatI	GCNGC	7 cut(s)	387, 657, 666, 792, 837, 840, 843
Sau3AI	GATC	4 cut(s)	238, 250, 354, 585
Sau96I	GGNCC	3 cut(s)	214, 648, 704
SchI	GAGTC	1 cut(s)	870
ScrFI	CCNGG	4 cut(s)	681, 682, 690, 702
SduI	GDGCHC	2 cut(s)	331, 451
SfaNI	GCATC	3 cut(s)	13, 387, 484
SfcI	CTRYAG	1 cut(s)	837
SfuI	TTCGAA	1 cut(s)	739
SinI	GGWCC	2 cut(s)	214, 648
SmaI	CCCGGG	1 cut(s)	682
SmlI	CTYRAG	2 cut(s)	113, 191
SmoI	CTYRAG	2 cut(s)	113, 191
Sse9I	AATT	4 cut(s)	38, 318, 596, 878
SsiI	CCGC	5 cut(s)	83, 299, 410, 583, 858
StyD4I	CCNGG	4 cut(s)	679, 680, 688, 700
StyI	CCWWGG	2 cut(s)	476, 519
TaaI	ACNGT	5 cut(s)	333, 431, 459, 754, 873
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	2 cut(s)	461, 739
TaqII	GACCGA	1 cut(s)	636
TasI	AATT	4 cut(s)	38, 318, 596, 878
TfiI	GAWTC	2 cut(s)	160, 767
Tru1I	TTAA	4 cut(s)	126, 276, 335, 599
Tru9I	TTAA	4 cut(s)	126, 276, 335, 599
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	14, 100
TseI	GCWGC	7 cut(s)	386, 656, 665, 791, 836, 839, 842
Tsp45I	GTSAC	2 cut(s)	14, 100
TspDTI	ATGAA	2 cut(s)	609, 819
TspGWI	ACGGA	1 cut(s)	826
TspMI	CCCGGG	1 cut(s)	680
TspRI	CASTG	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	214, 648
VspI	ATTAAT	1 cut(s)	599
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmaI	CCCGGG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.