Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0021256

Physical Location & Seq

Genomic Coordinates Forward (+)

30859766 .. 30862570

Gene Structure 2805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGGAGGAAGTGACTTAGATGCCCAAATAGAGAAATTGCTGAATGTGGAGAAACAAATGAGGCTCTCTGGTGATGTGGCGGGAACCAAGAAGGCTGTCACTGACATTCTTGAGCTTTGCTTTAAAGCAGGTGCTTGGAAGACCCTCAATGACCAGATTCTGGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGCCGTAACTGCATTGGTCCAGCAAGCAATGCAATATATTGATCAGACACCTGATCTTGAAACTCGTATAGAGCTGATTAAAACACTAAATAATGTTTCTGCGGGGAAGATATATGTTGAAATTGAGAGAGCACGGTTAATCAAAAGACTTGCAAAGATCAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAACTGCGGTGGAAACATTTGGTGCTATGGCAAAAACTGAGAAGATTGCATTCATTCTTGAACAAGTTCGTTTGTGTGAAGACCGTCAGGATTATGTTCGTGCTCAAATACTGTCGAGGAAGATTAGTCCAAGGGTGTTTGATGTTGATGCTTCAAAAGAAAAGAAAAAACCCAAGGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCTGATGTACCATCGCTCTTGGAGTTGAAGCGGATCTACTATGAATTAATGATACGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

223

Amino Acids

25.15

Weight (kDa)

6.49

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	11 - 189	4.8e-66	PSMD12/CSN4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021256)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g18950
rosa_multiflora	Rmu_co8406097.1_g000001
rosa_samantha	Rh1AG142400 Rh1CG134300 Rh1DG147300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	4 cut(s)	83, 299, 410, 640
AclWI	GGATC	1 cut(s)	650
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	163, 581
AgsI	TTSAA	6 cut(s)	257, 317, 464, 558, 599, 637
AluBI	AGCT	5 cut(s)	118, 190, 271, 386, 605
AluI	AGCT	5 cut(s)	118, 190, 271, 386, 605
Alw21I	GWGCWC	2 cut(s)	331, 508
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	386
AseI	ATTAAT	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	86, 596
AvaII	GGWCC	1 cut(s)	214
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BbsI	GAAGAC	2 cut(s)	149, 489
Bbv12I	GWGCWC	2 cut(s)	331, 508
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	2 cut(s)	165, 185
BclI	TGATCA	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	3 cut(s)	13, 387, 541
BpiI	GAAGAC	2 cut(s)	149, 489
BpuEI	CTTGAG	2 cut(s)	134, 176
BsaJI	CCNNGG	3 cut(s)	181, 533, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 581
Bse3DI	GCAATG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	181, 533, 576
BseLI	CCNNNNNNNGG	2 cut(s)	163, 581
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	331, 508
BslI	CCNNNNNNNGG	2 cut(s)	163, 581
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	331, 508
Bsp143I	GATC	4 cut(s)	238, 250, 354, 642
BspACI	CCGC	4 cut(s)	83, 299, 410, 640
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	3 cut(s)	181, 533, 576
BssMI	GATC	4 cut(s)	238, 250, 354, 642
BssT1I	CCWWGG	2 cut(s)	533, 576
Bst4CI	ACNGT	3 cut(s)	333, 488, 516
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	198, 222
BstDEI	CTNAG	2 cut(s)	19, 441
BstDSI	CCRYGG	1 cut(s)	181
BstKTI	GATC	4 cut(s)	241, 253, 357, 645
BstMBI	GATC	4 cut(s)	238, 250, 354, 642
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	2 cut(s)	149, 489
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	198, 222
CaiI	CAGNNNCTG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	617
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviJI	RGCY	9 cut(s)	67, 98, 118, 190, 200, 271, 373, 386, 605
CviKI_1	RGCY	9 cut(s)	67, 98, 118, 190, 200, 271, 373, 386, 605
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	2 cut(s)	19, 441
DpnI	GATC	4 cut(s)	240, 252, 356, 644
DpnII	GATC	4 cut(s)	238, 250, 354, 642
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	533, 576
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	533, 576
ErhI	CCWWGG	2 cut(s)	533, 576
FaiI	YATR	7 cut(s)	234, 266, 310, 312, 431, 498, 651
FauI	CCCGC	2 cut(s)	76, 292
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	86, 596
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	4 cut(s)	113, 254, 461, 491
HpyAV	CCTTC	2 cut(s)	88, 575
HpyCH4III	ACNGT	3 cut(s)	333, 488, 516
HpyCH4V	TGCA	5 cut(s)	209, 229, 350, 400, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
HpyF3I	CTNAG	2 cut(s)	19, 441
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	238, 250, 354, 642
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	610
LpnPI	CCDG	9 cut(s)	57, 117, 149, 170, 182, 230, 261, 476, 621
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	13, 387, 541
MaeIII	GTNAC	3 cut(s)	14, 100, 202
MalI	GATC	4 cut(s)	240, 252, 356, 644
MboI	GATC	4 cut(s)	238, 250, 354, 642
MboII	GAAGA	7 cut(s)	154, 316, 374, 457, 494, 535, 611
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	331, 508
MluCI	AATT	3 cut(s)	38, 318, 653
MnlI	CCTC	4 cut(s)	57, 158, 513, 659
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	4 cut(s)	126, 276, 335, 656
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
NdeII	GATC	4 cut(s)	238, 250, 354, 642
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	14, 100
PaqCI	CACCTGC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	357
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	656
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	126, 276, 335, 656
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	238, 250, 354, 642
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	2 cut(s)	331, 508
SetI	ASST	8 cut(s)	120, 136, 192, 250, 273, 388, 586, 607
SfaNI	GCATC	3 cut(s)	13, 387, 541
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	113, 191
SmoI	CTYRAG	2 cut(s)	113, 191
Sse9I	AATT	3 cut(s)	38, 318, 653
SsiI	CCGC	4 cut(s)	83, 299, 410, 640
StyI	CCWWGG	2 cut(s)	533, 576
TaaI	ACNGT	3 cut(s)	333, 488, 516
TaqI	TCGA	1 cut(s)	518
TasI	AATT	3 cut(s)	38, 318, 653
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	4 cut(s)	126, 276, 335, 656
Tru9I	TTAA	4 cut(s)	126, 276, 335, 656
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	14, 100
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	14, 100
TspDTI	ATGAA	2 cut(s)	445, 666
TspRI	CASTG	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.