Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0021256

Physical Location & Seq

Genomic Coordinates Forward (+)

29430102 .. 29432913

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAAGGAGGAAGTGACTTAGATGCCCAAATAGAGAAATTGCTGAATGTGGAGAAACAAATGAGGCTCTCTGGTGATGTGGCGGGAACCAAGAAGGCTGTCACTGACATTCTTGAGCTTTGCTTTAAAGCAGGTGCTTGGAAGACCCTCAATGACCAGATTCTGGTCTTGTCCAAACGCCGTGGTCAGCTCAAGCAGGCCGTAACTGCATTGGTCCAGCAAGCAATGCAATATATTGATCAGACACCTGATCTTGAAACTCGTATAGAGCTGATTAAAACACTAAATAATGTTTCTGCGGGGAAGATATATGTTGAAATTGAGAGAGCACGGTTAATCAAAAGACTTGCAAAGATCAAGGAAGAGCAAGGGCTTATTGCTGAAGCTGCTGATTTGATGCAAGAAACTGCGGTTCGTTTGTGTGAAGACCGTCAGGATTATGTTCGTGCTCAAATACTGTCGAGGAAGATTAGTCCAAGGGTGTTTGATGTTGATGCTTCAAAAGAAAAGAAAAAACCCAAGGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCTGATGTACCATCGCTCTTGGAGTTGAAGCGGATCTACTATGAATTAATGATACGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031595 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0051603 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

7.65

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	11 - 136	2.2e-44	PSMD12/CSN4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021256)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g18950
rosa_multiflora	Rmu_co8406097.1_g000001
rosa_samantha	Rh1AG142400 Rh1CG134300 Rh1DG147300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	4 cut(s)	83, 299, 410, 583
AclWI	GGATC	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	561
AfiI	CCNNNNNNNGG	2 cut(s)	163, 524
AgsI	TTSAA	5 cut(s)	257, 317, 501, 542, 580
AluBI	AGCT	5 cut(s)	118, 190, 271, 386, 548
AluI	AGCT	5 cut(s)	118, 190, 271, 386, 548
Alw21I	GWGCWC	2 cut(s)	331, 451
AlwI	GGATC	1 cut(s)	593
AlwNI	CAGNNNCTG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	386
AseI	ATTAAT	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	86, 539
AvaII	GGWCC	1 cut(s)	214
BarI	GAAGNNNNNNTAC	2 cut(s)	572, 604
BbsI	GAAGAC	2 cut(s)	149, 432
Bbv12I	GWGCWC	2 cut(s)	331, 451
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	2 cut(s)	165, 185
BclI	TGATCA	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	3 cut(s)	13, 387, 484
BpiI	GAAGAC	2 cut(s)	149, 432
BpuEI	CTTGAG	2 cut(s)	134, 176
BsaJI	CCNNGG	3 cut(s)	181, 476, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 524
Bse3DI	GCAATG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	181, 476, 519
BseLI	CCNNNNNNNGG	2 cut(s)	163, 524
BseMI	GCAATG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	331, 451
BslI	CCNNNNNNNGG	2 cut(s)	163, 524
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	331, 451
Bsp143I	GATC	4 cut(s)	238, 250, 354, 585
BspACI	CCGC	4 cut(s)	83, 299, 410, 583
BspANI	GGCC	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	593
BspQI	GCTCTTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	3 cut(s)	181, 476, 519
BssMI	GATC	4 cut(s)	238, 250, 354, 585
BssT1I	CCWWGG	2 cut(s)	476, 519
Bst4CI	ACNGT	3 cut(s)	333, 431, 459
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	198, 222
BstDEI	CTNAG	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	181
BstKTI	GATC	4 cut(s)	241, 253, 357, 588
BstMBI	GATC	4 cut(s)	238, 250, 354, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	2 cut(s)	149, 432
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	198, 222
CaiI	CAGNNNCTG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	560
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviJI	RGCY	9 cut(s)	67, 98, 118, 190, 200, 271, 373, 386, 548
CviKI_1	RGCY	9 cut(s)	67, 98, 118, 190, 200, 271, 373, 386, 548
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	4 cut(s)	240, 252, 356, 587
DpnII	GATC	4 cut(s)	238, 250, 354, 585
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	476, 519
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	476, 519
ErhI	CCWWGG	2 cut(s)	476, 519
FaiI	YATR	6 cut(s)	234, 266, 310, 312, 441, 594
FauI	CCCGC	2 cut(s)	76, 292
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	86, 539
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	3 cut(s)	113, 254, 434
HpyAV	CCTTC	2 cut(s)	88, 518
HpyCH4III	ACNGT	3 cut(s)	333, 431, 459
HpyCH4V	TGCA	4 cut(s)	209, 229, 350, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
HpyF3I	CTNAG	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	238, 250, 354, 585
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	9 cut(s)	57, 117, 149, 170, 182, 230, 261, 419, 564
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	13, 387, 484
MaeIII	GTNAC	3 cut(s)	14, 100, 202
MalI	GATC	4 cut(s)	240, 252, 356, 587
MboI	GATC	4 cut(s)	238, 250, 354, 585
MboII	GAAGA	6 cut(s)	154, 316, 374, 437, 478, 554
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	331, 451
MluCI	AATT	3 cut(s)	38, 318, 596
MnlI	CCTC	4 cut(s)	57, 158, 456, 602
MseI	TTAA	4 cut(s)	126, 276, 335, 599
MwoI	GCNNNNNNNGC	3 cut(s)	206, 226, 386
NdeII	GATC	4 cut(s)	238, 250, 354, 585
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	14, 100
PaqCI	CACCTGC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	160
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	599
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	126, 276, 335, 599
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	238, 250, 354, 585
Sau96I	GGNCC	1 cut(s)	214
SduI	GDGCHC	2 cut(s)	331, 451
SetI	ASST	8 cut(s)	120, 136, 192, 250, 273, 388, 529, 550
SfaNI	GCATC	3 cut(s)	13, 387, 484
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	113, 191
SmoI	CTYRAG	2 cut(s)	113, 191
Sse9I	AATT	3 cut(s)	38, 318, 596
SsiI	CCGC	4 cut(s)	83, 299, 410, 583
StyI	CCWWGG	2 cut(s)	476, 519
TaaI	ACNGT	3 cut(s)	333, 431, 459
TaqI	TCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	38, 318, 596
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	4 cut(s)	126, 276, 335, 599
Tru9I	TTAA	4 cut(s)	126, 276, 335, 599
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	2 cut(s)	14, 100
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	14, 100
TspDTI	ATGAA	1 cut(s)	609
TspRI	CASTG	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.