Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0020431

Physical Location & Seq

Genomic Coordinates Forward (+)

18738434 .. 18739482

Gene Structure 1049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCATGAGTTTAAAGGGATGCTTTACAAGTCTATGGAAGATCCACAAATAGATTTAACAAATCTTGAAAACACAGTGAGGCTGTTATTGGAGCTGGAGCCCGAGTCAGATCCTGTATGGCACTATTTAAATATACAGGTTAGTAAATTTGTAACTATACTTGGGATTTATTTGTTTATTTTTAAATTTCCTTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

67

Amino Acids

7.86

Weight (kDa)

4.86

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec5	PF15469	1 - 50	2e-08	Exocyst complex component Sec5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020431)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g20650
rosa_chinensis	RchiOBHm_Chr6g0266101 RchiOBHm_Chr7g0219231 RchiOBHm_Chr7g0230911
rosa_samantha	Rh2CG044700 Rh7AG482200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	35, 104
AcsI	RAATTY	2 cut(s)	146, 185
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AlwI	GGATC	2 cut(s)	35, 104
AlwNI	CAGNNNCTG	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	146, 185
AvaI	CYCGRG	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
BseGI	GGATG	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	40, 109
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	35, 104
BssMI	GATC	2 cut(s)	40, 109
Bst4CI	ACNGT	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	43, 112
BstMBI	GATC	2 cut(s)	40, 109
BstX2I	RGATCY	2 cut(s)	40, 109
BstYI	RGATCY	2 cut(s)	40, 109
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	113
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	3 cut(s)	82, 94, 100
CviKI_1	RGCY	3 cut(s)	82, 94, 100
DpnI	GATC	2 cut(s)	42, 111
DpnII	GATC	2 cut(s)	40, 109
DraI	TTTAAA	3 cut(s)	13, 129, 184
Eco24I	GRGCYC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	101
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	8
FaiI	YATR	5 cut(s)	6, 35, 118, 134, 158
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	1 cut(s)	4
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	116
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	40, 109
LmnI	GCTCC	2 cut(s)	91, 97
LpnPI	CCDG	3 cut(s)	80, 122, 126
LweI	GCATC	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	42, 111
MboI	GATC	2 cut(s)	40, 109
MboII	GAAGA	1 cut(s)	50
MflI	RGATCY	2 cut(s)	40, 109
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	146, 185
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	1 cut(s)	72
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	12, 56, 128, 183
NdeII	GATC	2 cut(s)	40, 109
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	1 cut(s)	99
NsiI	ATGCAT	1 cut(s)	6
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	40, 109
SaqAI	TTAA	4 cut(s)	12, 56, 128, 183
Sau3AI	GATC	2 cut(s)	40, 109
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	2 cut(s)	96, 141
SfaNI	GCATC	1 cut(s)	9
SgeI	CNNG	9 cut(s)	17, 40, 77, 107, 113, 115, 125, 149, 173
SmiI	ATTTAAAT	1 cut(s)	129
Sse9I	AATT	2 cut(s)	146, 185
SwaI	ATTTAAAT	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	2 cut(s)	146, 185
Tru1I	TTAA	4 cut(s)	12, 56, 128, 183
Tru9I	TTAA	4 cut(s)	12, 56, 128, 183
TscAI	CASTG	1 cut(s)	81
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	2 cut(s)	146, 185
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.