RchiOBHm_Chr7g0219231

exocyst complex component

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
37584373 .. 37585538
1166 bp
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UTR
Exon/CDS
Intron
PRQ19622

Sequence Viewer

Length: 246 bp
ATGATTGGCATATTGTTTTTTCTGTTCGAGTTTTACGATGATCAACTATTGGCCTTCATGGTCCTACTTCTTGTCTGGTTGAGTGAACTATTTACCCTGGTGGGAATACTGAAACATGTTCTTGAAGAGGTTGAGAAAGTGATGCATGAGTTTAAAGGCACTCTATACAAGTCTATGGAAGATCCACAGATAGATCTAACCAATGTAAGCTTAGGATGTAAACTATTAGCACGTATTTACTCTTAG

Protein Analysis

81

Amino Acids

9.46

Weight (kDa)

4.74

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020431)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 61
AvaII GGWCC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 98
BclI TGATCA 1 cut(s) 40
BglII AGATCT 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 211
BsaAI YACGTR 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 221
BshFI GGCC 1 cut(s) 53
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 40, 181, 193
BspANI GGCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 40, 181, 193
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 211, 243
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 3 cut(s) 43, 184, 196
BstMBI GATC 3 cut(s) 40, 181, 193
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 181, 193
BstYI RGATCY 2 cut(s) 181, 193
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 3 cut(s) 58, 116, 146
CviJI RGCY 2 cut(s) 53, 210
CviKI_1 RGCY 2 cut(s) 53, 210
DdeI CTNAG 2 cut(s) 211, 243
DpnI GATC 3 cut(s) 42, 183, 195
DpnII GATC 3 cut(s) 40, 181, 193
DraI TTTAAA 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 147
FaeI CATG 3 cut(s) 61, 119, 149
FaiI YATR 6 cut(s) 11, 59, 117, 147, 166, 176
FatI CATG 3 cut(s) 57, 115, 145
FbaI TGATCA 1 cut(s) 40
FokI GGATG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 3 cut(s) 61, 119, 149
HindIII AAGCTT 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 86, 221
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 86, 221
HpyAV CCTTC 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 211, 243
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 61, 119, 149
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 3 cut(s) 40, 181, 193
LpnPI CCDG 3 cut(s) 61, 83, 110
LweI GCATC 1 cut(s) 132
MaeII ACGT 1 cut(s) 232
MalI GATC 3 cut(s) 42, 183, 195
MboI GATC 3 cut(s) 40, 181, 193
MboII GAAGA 2 cut(s) 137, 191
MflI RGATCY 2 cut(s) 181, 193
MnlI CCTC 1 cut(s) 121
Mph1103I ATGCAT 1 cut(s) 147
MseI TTAA 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NdeII GATC 3 cut(s) 40, 181, 193
NlaIII CATG 3 cut(s) 61, 119, 149
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 1 cut(s) 119
PciI ACATGT 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 233
PscI ACATGT 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 2 cut(s) 181, 193
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 3 cut(s) 40, 181, 193
Sau96I GGNCC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 98
SetI ASST 3 cut(s) 132, 212, 235
SfaNI GCATC 1 cut(s) 132
SinI GGWCC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 27
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 61
XceI RCATGY 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.