RchiOBHm_Chr7g0230911

Tumour-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020431
Physical Location & Seq
Reverse (-)
54544538 .. 54548209
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20690

Sequence Viewer

Length: 450 bp
ATGATGGTGACAAAGTGTGCCGTTCTTATGATGTCTCTGTTTGTGTTCTTTACAACCACTATGTCTGTGTCATTTACTTTGAGAGAGACGCAGACTCGGATGCTGAAGTTCACAGTGCAGCTTCAACACCATGCTCGTCATCAGCTTCCAACATTTCAGTTGATTTTTGTGCATGTAATTGAATCACTTGTCTTTGTCCCGATTATGATTGGCATATTGTTTTTTCTGTTCGAGTTTTACGATGATCAACTATTGGCCTTCATGGTCCTAATTCTTGTCTGGTTGAGTGAACTATTTACCCTGGTGGGAATACTGAAACGTGTTCTTGAAGAGGTTGAGAAAGTGATGCATGAGTTTAAAGGCACTCTATACAAGTCTATGGAAGATCCACAGATAGATCTAACCAATGTAAGCTTAGGATGTAAACTATTAGCACGTATTTACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Membralin

Protein Analysis

149

Amino Acids

17.45

Weight (kDa)

6.5

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020431)

Species Orthologous Gene IDs
pyrus_communis pycom02g20650
rosa_chinensis RchiOBHm_Chr6g0266101 RchiOBHm_Chr7g0219231 RchiOBHm_Chr7g0230911
rosa_samantha Rh2CG044700 Rh7AG482200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 125, 182, 329
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 3 cut(s) 121, 145, 414
AluI AGCT 3 cut(s) 121, 145, 414
Alw26I GTCTC 2 cut(s) 39, 80
AlwI GGATC 1 cut(s) 380
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 39, 80
BglII AGATCT 1 cut(s) 397
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 90, 336
Bpu10I CCTNAGC 1 cut(s) 415
BsaAI YACGTR 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 105, 425
BseXI GCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 257
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 39, 80
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 244, 385, 397
BspANI GGCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 244, 385, 397
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 437
BstDEI CTNAG 2 cut(s) 415, 447
BstF5I GGATG 2 cut(s) 105, 425
BstKTI GATC 3 cut(s) 247, 388, 400
BstMAI GTCTC 2 cut(s) 39, 80
BstMBI GATC 3 cut(s) 244, 385, 397
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 130
BstX2I RGATCY 2 cut(s) 385, 397
BstYI RGATCY 2 cut(s) 385, 397
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 2 cut(s) 105, 425
BtsIMutI CAGTG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 97
CviAII CATG 4 cut(s) 131, 173, 262, 350
CviJI RGCY 4 cut(s) 121, 145, 257, 414
CviKI_1 RGCY 4 cut(s) 121, 145, 257, 414
DdeI CTNAG 2 cut(s) 415, 447
DpnI GATC 3 cut(s) 246, 387, 399
DpnII GATC 3 cut(s) 244, 385, 397
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 4 cut(s) 134, 176, 265, 353
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 130, 172, 261, 349
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 2 cut(s) 112, 432
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 257
HgaI GACGC 1 cut(s) 97
Hin1II CATG 4 cut(s) 134, 176, 265, 353
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 2 cut(s) 94, 182
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 3 cut(s) 111, 290, 425
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 199, 326
Hpy8I GTNNAC 3 cut(s) 111, 290, 425
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 2 cut(s) 319, 436
HpyCH4V TGCA 3 cut(s) 118, 172, 349
HpyF3I CTNAG 2 cut(s) 415, 447
HpySE526I ACGT 2 cut(s) 319, 436
Hsp92II CATG 4 cut(s) 134, 176, 265, 353
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 244, 385, 397
LpnPI CCDG 3 cut(s) 265, 287, 314
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 2 cut(s) 90, 336
MaeII ACGT 2 cut(s) 319, 436
MaeIII GTNAC 1 cut(s) 7
MalI GATC 3 cut(s) 246, 387, 399
MboI GATC 3 cut(s) 244, 385, 397
MboII GAAGA 2 cut(s) 341, 395
MflI RGATCY 2 cut(s) 385, 397
MluCI AATT 2 cut(s) 177, 270
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 1 cut(s) 325
Mph1103I ATGCAT 1 cut(s) 351
MseI TTAA 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 3 cut(s) 244, 385, 397
NlaIII CATG 4 cut(s) 134, 176, 265, 353
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 265
PsuI RGATCY 2 cut(s) 385, 397
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 3 cut(s) 244, 385, 397
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 302
SetI ASST 6 cut(s) 123, 147, 322, 336, 416, 439
SfaNI GCATC 2 cut(s) 90, 336
SinI GGWCC 1 cut(s) 265
Sse9I AATT 2 cut(s) 177, 270
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 2 cut(s) 322, 439
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 177, 270
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 265
XceI RCATGY 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.