pycom02g21250

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0021170
Physical Location & Seq
Forward (+)
19422467 .. 19425090
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
ATGGTTTATTCTCAGCAGCACAGAAGCATTAGTATTCTTATGCTTCCATGGCGAACCCACGGTCACATTTCTCCCTTCCTCGAGCTAGCCAAGAAGCTCACCCATAAGAGAAACAATCTTCACTTCTACATTTGTTCCACGCCTGTGAACCTCACCTCCATCAAACCCAAACTCTCTGGAAAATACTCTCACTGCATTGAGTTTGTGGAACTCCATCTTCCGCACGATGAGTTGCCTGAACTGCCACCTCACTACCACACCACCAATGGCCTCCCACCCCATCTCATGTCCACTCTCAAAAAGGCCTTCAACATGTCCAGCAGCAACTTCTCCGACATCCTCCAAACCCTAAAACCGGATTTGCTAATTTATGATTTTCTCCAACCATGGGCGCCCTCTCTAGCTTTGTCGCACAATATTCCGGCCGTTGAGTTTTGTACCATTAACGCTGCCACCATTATTTCAATTTTCGCTAACCATTTCAAGAATTCCAGTGGAGTTTTCATCAATGGCCTAAAGGACGGAGAGCGCATACAGCAGTGCAGTTCTAGTTCTTGCAACATCATTTTGGCGAAGACATCCAGAGAGATTGAAGCAAAATATATCGATAGTCTCTCTGATTTAGTCGGGGAAGAAGATTGTGCCCGTCGGTCCACTAGTTCAAGATCCACTGGACCAAAAAACCGACGAGGAGTCTCCGATCATCCAGTGGCTGAACAAAAGGGAGAAGTCTTCGGTTGTGGATCGATCCTTTGGGAGGTTGGGCACCACAAGCAAAGATATTGCAGCACCCTGGCGTCGGTGGGTTTGAGGTCGGCGTGGGTGTGGAGGCTAAGAGAGCAGAAGGTGGTGGTTTGCAGCGAGAAGCGATTGCGGAGGCGATCGGAGATGTGGTTGTCCTTCTTTCCCATTCTCTACCTTCTCCACCTTTACCCTCATTTCTCTTTAAGTGCTATTTTGCCCATCTCTTTAATGATGGTGGTTGGCCACATCTCCCCAAAGATGGTGGTTCACTCCAATCCTCTTTCAATGGTGGTTGTGAGCTCGAGTTTCGTCTCAATTTGGGAACTGGACTTTTCCTGTGTTGATTTTCCTCTAATTGCCCACTGTTTCTTGCCAATATGCACCGGATTTTCTTTAGCCCCAAACCCACAAATCCTTAACCCCAACTACAATTTCACCCACATGCTCTCCATCGTCATATGCTGTTTCCCTTTCACCTCCATCCTGGCCCTACTGACTCTCACTTTCTGTCAAATTGGCTGCTTTCGGTTAAGTACTCTAACGAACTCTTGCGTCTACTACCCACCCCGAGAGCGAATCGTCGCTCATTCAGTTGGAGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

450

Amino Acids

50.61

Weight (kDa)

8.85

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021170)

Species Orthologous Gene IDs
malus_domestica MD02G1248100.v1.1 MD02G1248200.v1.1
prunus_persica Prupe.2G085300_v2.0.a1
pyrus_communis pycom02g21250 pycom02g21260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 391, 765
AccI GTMKAC 1 cut(s) 1299
AciI CCGC 2 cut(s) 221, 874
AclWI GGATC 3 cut(s) 660, 742, 751
AcoI YGGCCR 2 cut(s) 423, 985
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 2 cut(s) 392, 797
AfaI GTAC 2 cut(s) 439, 1279
AfiI CCNNNNNNNGG 5 cut(s) 355, 388, 757, 799, 1003
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 6 cut(s) 310, 465, 484, 593, 663, 1029
AhdI GACNNNNNGTC 1 cut(s) 692
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 2 cut(s) 792, 1227
AjuI GAANNNNNNNTTGG 2 cut(s) 1160, 1192
AleI CACNNNNGTG 1 cut(s) 143
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 85, 97, 404, 1044
AluI AGCT 4 cut(s) 85, 97, 404, 1044
Alw21I GWGCWC 1 cut(s) 1046
Alw26I GTCTC 3 cut(s) 617, 700, 1060
AlwI GGATC 3 cut(s) 660, 742, 751
AlwNI CAGNNNCTG 1 cut(s) 713
Ama87I CYCGRG 3 cut(s) 80, 1045, 1311
AoxI GGCC 6 cut(s) 268, 303, 423, 511, 985, 1230
ApeKI GCWGC 6 cut(s) 16, 321, 449, 786, 858, 1263
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
AspLEI GCGC 2 cut(s) 394, 531
AspS9I GGNCC 3 cut(s) 651, 674, 1231
AsuHPI GGTGA 4 cut(s) 91, 145, 1171, 1210
AsuNHI GCTAGC 1 cut(s) 85
AvaI CYCGRG 3 cut(s) 80, 1045, 1311
AvaII GGWCC 2 cut(s) 651, 674
BaeGI GKGCMC 2 cut(s) 646, 768
BalI TGGCCA 1 cut(s) 987
BanI GGYRCC 2 cut(s) 391, 765
BanII GRGCYC 1 cut(s) 1046
BbsI GAAGAC 2 cut(s) 581, 724
Bbv12I GWGCWC 1 cut(s) 1046
BbvI GCAGC 6 cut(s) 28, 333, 436, 798, 870, 1250
BccI CCATC 8 cut(s) 167, 222, 288, 970, 971, 997, 1202, 1232
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 2 cut(s) 794, 1229
BcoDI GTCTC 3 cut(s) 617, 700, 1060
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 4 cut(s) 86, 401, 549, 657
BfoI RGCGCY 1 cut(s) 395
BisI GCNGC 6 cut(s) 17, 322, 450, 787, 859, 1264
BlsI GCNGC 6 cut(s) 18, 323, 451, 788, 860, 1265
BmcAI AGTACT 1 cut(s) 1279
Bme1390I CCNGG 2 cut(s) 794, 1229
Bme18I GGWCC 2 cut(s) 651, 674
BmeRI GACNNNNNGTC 1 cut(s) 692
BmeT110I CYCGRG 3 cut(s) 80, 1045, 1311
BmgT120I GGNCC 3 cut(s) 651, 674, 1231
BmiI GGNNCC 2 cut(s) 393, 767
BmrFI CCNGG 2 cut(s) 794, 1229
BmtI GCTAGC 1 cut(s) 89
BpiI GAAGAC 2 cut(s) 581, 724
Bsa29I ATCGAT 2 cut(s) 606, 746
BsaHI GRCGYC 2 cut(s) 392, 797
BsaJI CCNNGG 4 cut(s) 47, 58, 386, 792
BsaWI WCCGGW 2 cut(s) 355, 1127
BsaXI ACNNNNNCTCC 6 cut(s) 140, 170, 878, 908, 1175, 1205
Bsc4I CCNNNNNNNGG 5 cut(s) 355, 388, 757, 799, 1003
Bse1I ACTGG 4 cut(s) 492, 676, 707, 1074
BseBI CCWGG 2 cut(s) 794, 1229
BseCI ATCGAT 2 cut(s) 606, 746
BseDI CCNNGG 4 cut(s) 47, 58, 386, 792
BseGI GGATG 4 cut(s) 336, 578, 703, 1224
BseLI CCNNNNNNNGG 5 cut(s) 355, 388, 757, 799, 1003
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 4 cut(s) 492, 676, 707, 1074
BseRI GAGGAG 1 cut(s) 705
BseSI GKGCMC 2 cut(s) 646, 768
BseX3I CGGCCG 1 cut(s) 423
BseXI GCAGC 6 cut(s) 28, 333, 436, 798, 870, 1250
BsgI GTGCAG 1 cut(s) 562
Bsh1285I CGRYCG 2 cut(s) 426, 884
BshFI GGCC 6 cut(s) 270, 305, 425, 513, 987, 1232
BshNI GGYRCC 2 cut(s) 391, 765
BshVI ATCGAT 2 cut(s) 606, 746
BsiEI CGRYCG 2 cut(s) 426, 884
BsiHKAI GWGCWC 1 cut(s) 1046
BsiHKCI CYCGRG 3 cut(s) 80, 1045, 1311
BsiSI CCGG 3 cut(s) 356, 422, 1128
BslI CCNNNNNNNGG 5 cut(s) 355, 388, 757, 799, 1003
BsmAI GTCTC 3 cut(s) 617, 700, 1060
BsmBI CGTCTC 1 cut(s) 1060
BsnI GGCC 6 cut(s) 270, 305, 425, 513, 987, 1232
BsoBI CYCGRG 3 cut(s) 80, 1045, 1311
Bsp1286I GDGCHC 3 cut(s) 646, 768, 1046
Bsp143I GATC 5 cut(s) 665, 700, 743, 747, 881
Bsp19I CCATGG 2 cut(s) 47, 386
BspACI CCGC 2 cut(s) 221, 874
BspANI GGCC 6 cut(s) 270, 305, 425, 513, 987, 1232
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 2 cut(s) 606, 746
BspLI GGNNCC 2 cut(s) 393, 767
BspOI GCTAGC 1 cut(s) 89
BspPI GGATC 3 cut(s) 660, 742, 751
BspT107I GGYRCC 2 cut(s) 391, 765
BsrI ACTGG 4 cut(s) 492, 676, 707, 1074
BssECI CCNNGG 4 cut(s) 47, 58, 386, 792
BssMI GATC 5 cut(s) 665, 700, 743, 747, 881
BssNI GRCGYC 2 cut(s) 392, 797
BssT1I CCWWGG 2 cut(s) 47, 386
Bst2UI CCWGG 2 cut(s) 794, 1229
Bst4CI ACNGT 2 cut(s) 62, 1109
BstACI GRCGYC 2 cut(s) 392, 797
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 12, 833
BstDSI CCRYGG 3 cut(s) 47, 58, 386
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 4 cut(s) 336, 578, 703, 1224
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 2 cut(s) 394, 531
BstKTI GATC 5 cut(s) 668, 703, 746, 750, 884
BstMAI GTCTC 3 cut(s) 617, 700, 1060
BstMBI GATC 5 cut(s) 665, 700, 743, 747, 881
BstMCI CGRYCG 2 cut(s) 426, 884
BstMWI GCNNNNNNNGC 5 cut(s) 49, 241, 535, 772, 838
BstNI CCWGG 2 cut(s) 794, 1229
BstNSI RCATGY 2 cut(s) 316, 1189
BstSCI CCNGG 2 cut(s) 792, 1227
BstSLI GKGCMC 2 cut(s) 646, 768
BstV1I GCAGC 6 cut(s) 28, 333, 436, 798, 870, 1250
BstV2I GAAGAC 2 cut(s) 581, 724
BstX2I RGATCY 1 cut(s) 665
BstYI RGATCY 1 cut(s) 665
BstZI CGGCCG 1 cut(s) 423
Bsu15I ATCGAT 2 cut(s) 606, 746
BsuRI GGCC 6 cut(s) 270, 305, 425, 513, 987, 1232
BsuTUI ATCGAT 2 cut(s) 606, 746
BtgI CCRYGG 3 cut(s) 47, 58, 386
BtsCI GGATG 4 cut(s) 336, 578, 703, 1224
BtsI GCAGTG 2 cut(s) 190, 545
BtsIMutI CAGTG 6 cut(s) 190, 499, 545, 669, 714, 1105
Cac8I GCNNGC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 713
CfoI GCGC 2 cut(s) 394, 531
Cfr13I GGNCC 3 cut(s) 651, 674, 1231
ClaI ATCGAT 2 cut(s) 606, 746
CseI GACGC 2 cut(s) 786, 1285
Csp6I GTAC 2 cut(s) 438, 1278
CspCI CAANNNNNGTGG 2 cut(s) 987, 1022
CviAII CATG 5 cut(s) 48, 286, 313, 387, 1186
CviQI GTAC 2 cut(s) 438, 1278
DdeI CTNAG 2 cut(s) 12, 833
DinI GGCGCC 1 cut(s) 393
DpnI GATC 5 cut(s) 667, 702, 745, 749, 883
DpnII GATC 5 cut(s) 665, 700, 743, 747, 881
DriI GACNNNNNGTC 1 cut(s) 692
EaeI YGGCCR 2 cut(s) 423, 985
EagI CGGCCG 1 cut(s) 423
Eam1105I GACNNNNNGTC 1 cut(s) 692
Ecl136II GAGCTC 1 cut(s) 1044
EclXI CGGCCG 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 47, 386
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 1046
Eco47I GGWCC 2 cut(s) 651, 674
Eco52I CGGCCG 1 cut(s) 423
Eco53kI GAGCTC 1 cut(s) 1044
Eco88I CYCGRG 3 cut(s) 80, 1045, 1311
EcoICRI GAGCTC 1 cut(s) 1044
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoRI GAATTC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 792, 1227
EcoT14I CCWWGG 2 cut(s) 47, 386
EcoT38I GRGCYC 1 cut(s) 1046
EgeI GGCGCC 1 cut(s) 393
EheI GGCGCC 1 cut(s) 393
ErhI CCWWGG 2 cut(s) 47, 386
Esp3I CGTCTC 1 cut(s) 1060
FaeI CATG 5 cut(s) 51, 289, 316, 390, 1189
FatI CATG 5 cut(s) 47, 285, 312, 386, 1185
FauNDI CATATG 1 cut(s) 1202
FblI GTMKAC 1 cut(s) 1299
Fnu4HI GCNGC 6 cut(s) 17, 322, 450, 787, 859, 1264
FokI GGATG 4 cut(s) 323, 565, 690, 1211
FriOI GRGCYC 1 cut(s) 1046
Fsp4HI GCNGC 6 cut(s) 17, 322, 450, 787, 859, 1264
FspBI CTAG 4 cut(s) 86, 401, 549, 657
GlaI GCGC 2 cut(s) 393, 530
GluI GCNGC 6 cut(s) 17, 322, 450, 787, 859, 1264
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 6 cut(s) 270, 305, 425, 513, 987, 1232
HapII CCGG 3 cut(s) 356, 422, 1128
HgaI GACGC 2 cut(s) 786, 1285
HhaI GCGC 2 cut(s) 394, 531
Hin1I GRCGYC 2 cut(s) 392, 797
Hin1II CATG 5 cut(s) 51, 289, 316, 390, 1189
Hin6I GCGC 2 cut(s) 392, 529
HinP1I GCGC 2 cut(s) 392, 529
HinfI GANTC 3 cut(s) 693, 1240, 1320
HpaII CCGG 3 cut(s) 356, 422, 1128
HphI GGTGA 4 cut(s) 91, 145, 1171, 1210
Hpy166II GTNNAC 5 cut(s) 148, 291, 654, 1012, 1300
Hpy188I TCNGA 4 cut(s) 334, 619, 700, 886
Hpy188III TCNNGA 4 cut(s) 177, 484, 582, 663
Hpy8I GTNNAC 5 cut(s) 148, 291, 654, 1012, 1300
Hpy99I CGWCG 4 cut(s) 651, 690, 802, 1328
HpyAV CCTTC 5 cut(s) 85, 316, 838, 910, 929
HpyCH4III ACNGT 2 cut(s) 62, 1109
HpyCH4V TGCA 6 cut(s) 195, 543, 558, 786, 858, 1125
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 241, 535, 772, 838
HpyF3I CTNAG 2 cut(s) 12, 833
Hsp92I GRCGYC 2 cut(s) 392, 797
Hsp92II CATG 5 cut(s) 51, 289, 316, 390, 1189
HspAI GCGC 2 cut(s) 392, 529
KasI GGCGCC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 665, 700, 743, 747, 881
Lsp1109I GCAGC 6 cut(s) 28, 333, 436, 798, 870, 1250
MaeI CTAG 4 cut(s) 86, 401, 549, 657
MaeIII GTNAC 1 cut(s) 62
MalI GATC 5 cut(s) 667, 702, 745, 749, 883
MboI GATC 5 cut(s) 665, 700, 743, 747, 881
MboII GAAGA 6 cut(s) 110, 209, 586, 644, 647, 724
MflI RGATCY 1 cut(s) 665
MhlI GDGCHC 3 cut(s) 646, 768, 1046
MlsI TGGCCA 1 cut(s) 987
MluCI AATT 7 cut(s) 366, 465, 487, 1059, 1098, 1174, 1257
MluNI TGGCCA 1 cut(s) 987
Mly113I GGCGCC 1 cut(s) 392
MlyI GAGTC 2 cut(s) 702, 1234
MmeI TCCRAC 3 cut(s) 357, 406, 1318
Mox20I TGGCCA 1 cut(s) 987
MscI TGGCCA 1 cut(s) 987
MseI TTAA 5 cut(s) 444, 947, 971, 1161, 1274
MslI CAYNNNNRTG 2 cut(s) 143, 1184
Msp20I TGGCCA 1 cut(s) 987
MspI CCGG 3 cut(s) 356, 422, 1128
MspR9I CCNGG 2 cut(s) 794, 1229
MvaI CCWGG 2 cut(s) 794, 1229
MwoI GCNNNNNNNGC 5 cut(s) 49, 241, 535, 772, 838
NarI GGCGCC 1 cut(s) 392
NcoI CCATGG 2 cut(s) 47, 386
NdeI CATATG 1 cut(s) 1202
NdeII GATC 5 cut(s) 665, 700, 743, 747, 881
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 5 cut(s) 51, 289, 316, 390, 1189
NlaIV GGNNCC 2 cut(s) 393, 767
NmuCI GTSAC 1 cut(s) 62
NspI RCATGY 2 cut(s) 316, 1189
OliI CACNNNNGTG 1 cut(s) 143
PaeR7I CTCGAG 2 cut(s) 80, 1045
PceI AGGCCT 1 cut(s) 305
PciI ACATGT 1 cut(s) 312
PfeI GAWTC 1 cut(s) 1320
PkrI GCNGC 6 cut(s) 18, 323, 451, 788, 860, 1265
Ple19I CGATCG 1 cut(s) 884
PleI GAGTC 2 cut(s) 701, 1234
PluTI GGCGCC 1 cut(s) 395
PpsI GAGTC 2 cut(s) 701, 1234
PscI ACATGT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 1046
Psp6I CCWGG 2 cut(s) 792, 1227
PspGI CCWGG 2 cut(s) 792, 1227
PspN4I GGNNCC 2 cut(s) 393, 767
PspPI GGNCC 3 cut(s) 651, 674, 1231
PspXI VCTCGAGB 2 cut(s) 80, 1045
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 665
PvuI CGATCG 1 cut(s) 884
RsaI GTAC 2 cut(s) 439, 1279
RsaNI GTAC 2 cut(s) 438, 1278
RseI CAYNNNNRTG 2 cut(s) 143, 1184
SacI GAGCTC 1 cut(s) 1046
SaqAI TTAA 5 cut(s) 444, 947, 971, 1161, 1274
SatI GCNGC 6 cut(s) 17, 322, 450, 787, 859, 1264
Sau3AI GATC 5 cut(s) 665, 700, 743, 747, 881
Sau96I GGNCC 3 cut(s) 651, 674, 1231
ScaI AGTACT 1 cut(s) 1279
SchI GAGTC 2 cut(s) 702, 1234
ScrFI CCNGG 2 cut(s) 794, 1229
SduI GDGCHC 3 cut(s) 646, 768, 1046
SfoI GGCGCC 1 cut(s) 393
Sfr274I CTCGAG 2 cut(s) 80, 1045
SinI GGWCC 2 cut(s) 651, 674
SlaI CTCGAG 2 cut(s) 80, 1045
SmiMI CAYNNNNRTG 2 cut(s) 143, 1184
SmlI CTYRAG 2 cut(s) 80, 1045
SmoI CTYRAG 2 cut(s) 80, 1045
SpeI ACTAGT 1 cut(s) 656
Sse9I AATT 7 cut(s) 366, 465, 487, 1059, 1098, 1174, 1257
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 2 cut(s) 221, 874
SspDI GGCGCC 1 cut(s) 391
SspI AATATT 1 cut(s) 418
SspMI CTAG 4 cut(s) 86, 401, 549, 657
SstI GAGCTC 1 cut(s) 1046
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 792, 1227
StyI CCWWGG 2 cut(s) 47, 386
TaaI ACNGT 2 cut(s) 62, 1109
TaqI TCGA 4 cut(s) 81, 606, 746, 1046
TaqII GACCGA 1 cut(s) 639
TasI AATT 7 cut(s) 366, 465, 487, 1059, 1098, 1174, 1257
TatI WGTACW 1 cut(s) 1277
TfiI GAWTC 1 cut(s) 1320
Tru1I TTAA 5 cut(s) 444, 947, 971, 1161, 1274
Tru9I TTAA 5 cut(s) 444, 947, 971, 1161, 1274
TscAI CASTG 6 cut(s) 197, 499, 545, 676, 714, 1112
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 6 cut(s) 16, 321, 449, 786, 858, 1263
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 493
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 6 cut(s) 197, 499, 545, 676, 714, 1112
VpaK11BI GGWCC 2 cut(s) 651, 674
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 1 cut(s) 487
XceI RCATGY 2 cut(s) 316, 1189
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
XhoI CTCGAG 2 cut(s) 80, 1045
XmiI GTMKAC 1 cut(s) 1299
XspI CTAG 4 cut(s) 86, 401, 549, 657
ZrmI AGTACT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.