pycom03g00400

Arabinogalactan peptide

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
324103 .. 324285
183 bp
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UTR
Exon/CDS
Intron
pycom03g00400.1

Sequence Viewer

Length: 183 bp
ATGGAGGCAATGAAGATGAATCTTTTTGTTGCTTTGTTGGTGGTTATGATGGTGGCCTTCTCAGGCATTCAACAAGTAGCTGCAGCTGATGCTCCAGCTCCAAGCCCAACATCTGATGCCTTCACATTTGCCCCCACTTTCTTTGCTTCTCTAGCAGCTTTGGCTTTTGGCTTCTTCTTTTAA

Protein Analysis

61

Amino Acids

6.33

Weight (kDa)

4.05

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55330 AT3G13520 AT4G26320 AT5G56540
malus_domestica MD03G1004000.v1.1 MD11G1003700.v1.1
prunus_persica Prupe.6G003500_v2.0.a1
pyrus_communis pycom03g00400
rosa_chinensis RchiOBHm_Chr5g0083751
rosa_roxburghii Rroxscaffold_1G00000830
rosa_wichuraiana Rw5G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 4 cut(s) 80, 86, 98, 158
AluI AGCT 4 cut(s) 80, 86, 98, 158
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 80, 83, 155
BbvI GCAGC 3 cut(s) 67, 95, 167
BccI CCATC 1 cut(s) 43
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 3 cut(s) 81, 84, 156
BlsI GCNGC 3 cut(s) 82, 85, 157
BmsI GCATC 2 cut(s) 79, 106
BpmI CTGGAG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 67, 95, 167
BshFI GGCC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 1 cut(s) 56
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 89, 152, 161
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 67, 95, 167
BsuRI GGCC 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviJI RGCY 8 cut(s) 56, 80, 86, 98, 105, 158, 164, 171
CviKI_1 RGCY 8 cut(s) 56, 80, 86, 98, 105, 158, 164, 171
DdeI CTNAG 1 cut(s) 61
FaiI YATR 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 81, 84, 156
Fsp4HI GCNGC 3 cut(s) 81, 84, 156
FspBI CTAG 1 cut(s) 152
GluI GCNGC 3 cut(s) 81, 84, 156
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 56
HinfI GANTC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 67, 130
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 152, 161
HpyF3I CTNAG 1 cut(s) 61
LmnI GCTCC 2 cut(s) 97, 103
LpnPI CCDG 2 cut(s) 48, 108
Lsp1109I GCAGC 3 cut(s) 67, 95, 167
LweI GCATC 2 cut(s) 79, 106
MaeI CTAG 1 cut(s) 152
MboII GAAGA 2 cut(s) 25, 166
MseI TTAA 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 66
MwoI GCNNNNNNNGC 3 cut(s) 89, 152, 161
PctI GAATGC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 82, 85, 157
PstI CTGCAG 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 181
SatI GCNGC 3 cut(s) 81, 84, 156
SetI ASST 4 cut(s) 82, 88, 100, 160
SfaNI GCATC 2 cut(s) 79, 106
SfcI CTRYAG 1 cut(s) 81
SgeI CNNG 5 cut(s) 75, 86, 107, 114, 164
SspMI CTAG 1 cut(s) 152
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TseI GCWGC 3 cut(s) 80, 83, 155
TspDTI ATGAA 2 cut(s) 26, 32
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.