Rroxscaffold_1G00000830

Arabinogalactan peptide

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
1250050 .. 1250235
186 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00000830.1

Sequence Viewer

Length: 186 bp
ATGGAGTCAATGAAGATGAAGCTTTCAGTGGCTATGTTGGTGGTTGTGATGGTGGCCTTGTCAAGCATTGAGAAGGTGGCTGCAGCTGATGCTCCAGCACCTAGCCCAACATCTGATGCCGCCACCCTCTTTGTGCCCACTTTCTTTGCATCTCTAGCAGCTTTGGCTTTTGGAGTCCTCTTCTGA

Protein Analysis

61

Amino Acids

6.26

Weight (kDa)

4.78

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55330 AT3G13520 AT4G26320 AT5G56540
malus_domestica MD03G1004000.v1.1 MD11G1003700.v1.1
prunus_persica Prupe.6G003500_v2.0.a1
pyrus_communis pycom03g00400
rosa_chinensis RchiOBHm_Chr5g0083751
rosa_roxburghii Rroxscaffold_1G00000830
rosa_wichuraiana Rw5G050100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AluBI AGCT 3 cut(s) 22, 86, 161
AluI AGCT 3 cut(s) 22, 86, 161
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 80, 83, 158
BaeGI GKGCMC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 67, 95, 170
BccI CCATC 1 cut(s) 43
BfaI CTAG 2 cut(s) 102, 155
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 4 cut(s) 81, 84, 120, 159
BlsI GCNGC 4 cut(s) 82, 85, 121, 160
BmsI GCATC 3 cut(s) 79, 106, 158
BpmI CTGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 3 cut(s) 67, 95, 170
BshFI GGCC 1 cut(s) 56
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 138
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 56
BspMAI CTGCAG 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 89
BstMWI GCNNNNNNNGC 3 cut(s) 89, 155, 164
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 67, 95, 170
BsuRI GGCC 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 33
CspCI CAANNNNNGTGG 4 cut(s) 112, 127, 147, 162
CviJI RGCY 8 cut(s) 22, 32, 56, 80, 86, 105, 161, 167
CviKI_1 RGCY 8 cut(s) 22, 32, 56, 80, 86, 105, 161, 167
FaiI YATR 1 cut(s) 35
Fnu4HI GCNGC 4 cut(s) 81, 84, 120, 159
Fsp4HI GCNGC 4 cut(s) 81, 84, 120, 159
FspBI CTAG 2 cut(s) 102, 155
GluI GCNGC 4 cut(s) 81, 84, 120, 159
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 5, 174
Hpy188I TCNGA 2 cut(s) 115, 185
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 83, 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 155, 164
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 1 cut(s) 108
Lsp1109I GCAGC 3 cut(s) 67, 95, 170
LweI GCATC 3 cut(s) 79, 106, 158
MaeI CTAG 2 cut(s) 102, 155
MboII GAAGA 2 cut(s) 25, 172
MhlI GDGCHC 1 cut(s) 138
MlyI GAGTC 2 cut(s) 14, 183
MnlI CCTC 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 89, 155, 164
PkrI GCNGC 4 cut(s) 82, 85, 121, 160
PleI GAGTC 2 cut(s) 13, 182
PpsI GAGTC 2 cut(s) 13, 182
PstI CTGCAG 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 86
SatI GCNGC 4 cut(s) 81, 84, 120, 159
SchI GAGTC 2 cut(s) 14, 183
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 24, 78, 88, 103, 163
SfaNI GCATC 3 cut(s) 79, 106, 158
SfcI CTRYAG 1 cut(s) 81
SgeI CNNG 5 cut(s) 70, 75, 107, 114, 167
SsiI CCGC 1 cut(s) 120
SspMI CTAG 2 cut(s) 102, 155
TauI GCSGC 1 cut(s) 122
TscAI CASTG 1 cut(s) 33
TseI GCWGC 3 cut(s) 80, 83, 158
TspDTI ATGAA 2 cut(s) 26, 32
TspRI CASTG 1 cut(s) 33
XspI CTAG 2 cut(s) 102, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.