pycom03g17810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0021043
Physical Location & Seq
Forward (+)
18894179 .. 18896622
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGTTTGGCGCTATATATGATCATAACAGCTATTGGGCACTGAGGACAATAGTTCAAGGATTTTGCAAACAGATAAGAAAAAGGTTGAAAGCATCAAATCTCATGGCAGCGACATTGACAAAAAGAGCCCTCTCCAACATCTCAACACATTTGCCTAAGGAGCATCCCCCTTGCATTCAATCCTGCTTATCCAGGGCTTGCTTCTCCACTTCCTATGAACGTGTCCAAGACCCAAGAAATAGGCCACCAACAGAGGCAGGCAGGCATGGAGCAGCGACTGAGGGAAGAGAAGGTGATACGAGGATTGATGACATGAGTGGCGTTACAGGATTTATGGCAGACACAGCAAGACAAAGCGCGGCAAAAGCAACGGAGGTGGCGGAGGACCCGGTTGACATGGCAAGGGAGACAAATGTTGCATGGGATTCTGCCAAGAACACTACCCGGAAGGCCACCGACACTTTGGTTGCTGAGGCTGATGCGAACGTTGTTGATACAGCTGAGTATAGAACTATTGAAGATCACAGTAAGTTCGCAGATCAGAACGACCACCATCAGAAGGGTCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.06

Weight (kDa)

6.7

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021043)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g19660
pyrus_communis pycom03g17810
rosa_laevigata RLG00000033435
rosa_roxburghii Rroxscaffold_1G00047160
rosa_rugosa Rorug05G0134200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 359, 380
AclI AACGTT 1 cut(s) 486
AfiI CCNNNNNNNGG 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 4 cut(s) 56, 88, 179, 518
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 30, 500
AluI AGCT 2 cut(s) 30, 500
Alw26I GTCTC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 2 cut(s) 242, 450
ApeKI GCWGC 2 cut(s) 107, 272
AspLEI GCGC 2 cut(s) 11, 359
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 2 cut(s) 389, 445
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 1 cut(s) 385
AxyI CCTNAGG 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 2 cut(s) 119, 284
BccI CCATC 1 cut(s) 561
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 2 cut(s) 389, 445
BcoDI GTCTC 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 3 cut(s) 108, 273, 360
BlsI GCNGC 3 cut(s) 109, 274, 361
Bme1390I CCNGG 3 cut(s) 193, 389, 445
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 3 cut(s) 193, 389, 445
BmsI GCATC 3 cut(s) 101, 172, 469
Bpu10I CCTNAGC 1 cut(s) 471
BpuMI CCSGG 2 cut(s) 389, 445
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse21I CCTNAGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 4 cut(s) 32, 270, 462, 492
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 2 cut(s) 119, 284
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 244, 452
BsiSI CCGG 2 cut(s) 389, 445
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 2 cut(s) 244, 452
Bsp1286I GDGCHC 2 cut(s) 40, 130
Bsp143I GATC 3 cut(s) 19, 520, 538
BspACI CCGC 2 cut(s) 359, 380
BspANI GGCC 2 cut(s) 244, 452
BspCNI CTCAG 4 cut(s) 33, 271, 463, 493
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 19, 520, 538
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 199, 259, 263
BstDEI CTNAG 5 cut(s) 41, 156, 279, 471, 501
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 359
BstKTI GATC 3 cut(s) 22, 523, 541
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 3 cut(s) 19, 520, 538
BstMWI GCNNNNNNNGC 3 cut(s) 160, 344, 365
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 3 cut(s) 191, 387, 443
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 2 cut(s) 119, 284
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 2 cut(s) 244, 452
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 3 cut(s) 199, 259, 263
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 2 cut(s) 11, 359
Cfr13I GGNCC 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 5 cut(s) 103, 266, 313, 397, 420
CviJI RGCY 7 cut(s) 30, 128, 197, 244, 452, 476, 500
CviKI_1 RGCY 7 cut(s) 30, 128, 197, 244, 452, 476, 500
DdeI CTNAG 5 cut(s) 41, 156, 279, 471, 501
DpnI GATC 3 cut(s) 21, 522, 540
DpnII GATC 3 cut(s) 19, 520, 538
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 385
Eco81I CCTNAGG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 5 cut(s) 106, 269, 316, 400, 423
FatI CATG 5 cut(s) 102, 265, 312, 396, 419
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 108, 273, 360
FokI GGATG 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 108, 273, 360
GlaI GCGC 2 cut(s) 10, 358
GluI GCNGC 3 cut(s) 108, 273, 360
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 244, 452
HapII CCGG 2 cut(s) 389, 445
HhaI GCGC 2 cut(s) 11, 359
Hin1II CATG 5 cut(s) 106, 269, 316, 400, 423
Hin6I GCGC 2 cut(s) 9, 357
HinP1I GCGC 2 cut(s) 9, 357
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 425
HpaII CCGG 2 cut(s) 389, 445
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 543, 558
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 3 cut(s) 284, 442, 553
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 2 cut(s) 220, 486
HpyCH4V TGCA 3 cut(s) 66, 174, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 344, 365
HpyF3I CTNAG 5 cut(s) 41, 156, 279, 471, 501
HpySE526I ACGT 2 cut(s) 220, 486
Hsp92II CATG 5 cut(s) 106, 269, 316, 400, 423
HspAI GCGC 2 cut(s) 9, 357
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 19, 520, 538
LmnI GCTCC 2 cut(s) 160, 269
LpnPI CCDG 8 cut(s) 178, 196, 205, 243, 247, 312, 402, 458
Lsp1109I GCAGC 2 cut(s) 119, 284
LweI GCATC 3 cut(s) 101, 172, 469
MaeII ACGT 2 cut(s) 220, 486
MaeIII GTNAC 2 cut(s) 322, 563
MalI GATC 3 cut(s) 21, 522, 540
MboI GATC 3 cut(s) 19, 520, 538
MboII GAAGA 2 cut(s) 297, 530
MhlI GDGCHC 2 cut(s) 40, 130
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 36, 140, 247, 274, 294, 367, 376, 466
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 2 cut(s) 389, 445
MspR9I CCNGG 3 cut(s) 193, 389, 445
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 160, 344, 365
NciI CCSGG 2 cut(s) 389, 445
NdeII GATC 3 cut(s) 19, 520, 538
NlaIII CATG 5 cut(s) 106, 269, 316, 400, 423
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 563
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 3 cut(s) 109, 274, 361
PpuMI RGGWCCY 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 385
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 500
SatI GCNGC 3 cut(s) 108, 273, 360
Sau3AI GATC 3 cut(s) 19, 520, 538
Sau96I GGNCC 1 cut(s) 385
ScrFI CCNGG 3 cut(s) 193, 389, 445
SduI GDGCHC 2 cut(s) 40, 130
SetI ASST 7 cut(s) 32, 86, 223, 295, 378, 489, 502
SfaNI GCATC 3 cut(s) 101, 172, 469
SinI GGWCC 1 cut(s) 385
SsiI CCGC 2 cut(s) 359, 380
StyD4I CCNGG 3 cut(s) 191, 387, 443
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 2 cut(s) 223, 489
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 425
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 2 cut(s) 107, 272
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.