Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004374

Physical Location & Seq

Genomic Coordinates Forward (+)

18958303 .. 18963068

Gene Structure 4766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17880.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAGAGTTCTCTTCATTATACCTCGAGAAAATCCACCTCAGTTGGATGAGCATTTTTCTCGACCTATGAAAGAATTTGTTTCATTTTGTTTGAAGAAGGTACCAGCTGAGCGTGCAAGTGCCAAGGAACTTCTAAAGCACCGTTTTATTCGGACTGCAAGGAAGAGTCCACGACTTCTGGAGAGAATAAGAGAGCGTCCAAAATACCCTATCAAGGAAGATGCTGACAGCCCTAGAAATGGTCCTACAGCTAGAGGGGAGATATCTGATACTGTGAAAGTGACTAGAAATATAATAGATGAAACTGTTCGGGCTAGTGACCAGGGTAAGACCACAAAAAATGCTGGATGGGATTTCAGTATTGGAGCACAGGGTACAGGTACTGTTAGAAGTGTTCCAAAACTAAAACCACCGCAGGCAAGAGAGAAAAAGCCAGAAGGCAGTCAGATTACCTCTGGAAGAGTCCCAGAGAATATTAACCGACGGTTCTCGGCGTCTGGGAATGCTCTTCAAGAATCGCGTGAAGATTATTTTTCTAGGGATGGTAGAGATTCATATCATGATGAGTCAAATCCTGAAGATGATGAATTGACTGCGAGTGGGTCAGGAACTGTTGTTATACGAACTCCCAAAGGATCTCAACCATCTACTCAGTTTCGTCATCAAAACTCTCTGTCTAGTGGCACATACGCTTCTTATGAAGATGCTTCATCCAGTGGAACTGTTGTTTTTCGTGGTCAACATGATGATTCTGATTCTCCTGGAACGCCAAAATCGAGGCTGGGAATTCAAGAGAAAACTTCAACTGCCCCAAACGAAGACAGTGCCATTAATCTTGCAGAGGCAAAGGCTGCGATTCAAGGAGGGAGGAAAGGAAATGCCAGAGATAGGTCTGCACTTAACAAGATCAACTACGATGAGCACGATAGTAGAAGAGGGCAGATGACAAGTAGCTCTGATTCTTCCAGACAATCTCATGAATACTTTGATGCCCGAAAGGCATTTCCAAGATCACCCCAAGCAAGTGATGACGAAGAAAGTGCAAAAGTTATATCATCATCTGCAGCACTATCGATAGTGCTTATCCCTTCGTTAAAAGAGGCCATTGCTGATGATCCAGAAGGGTCAGCTGTGCGTTCAGTTGTAAATTCGCTTGTCAAGTTGGAGAGCTTGAAGCCAGATCGATCTTCTGAAGTTTTTGTCAGCAAATTGCTTCAGCGATTATCAAGTTCACAAAGTCCGAAGGAATCTTCATTGAAAGACTTACAGGAGCTGGCTGCTCGCATCTTTGCTAAGGGCAAGACAGCTTCTGAAGAAACACAAAAAGCAGAAGCTGATAACAAGAAAAGGCAGCAGAACAAGGAGTTCCAATCCCACGCAAATATGAGCCCGCTCGCAAGATTTTTGCTTTCAAGATGGCAAGGGCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

478

Amino Acids

52.72

Weight (kDa)

9.45

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15220
fragaria_vesca	FvH4_3g19600 FvH4_3g19600 FvH4_3g19600 FvH4_3g19600
malus_domestica	MD03G1231300.v1.1 MD11G1252300.v1.1
prunus_persica	Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1
pyrus_communis	pycom03g17880 pycom11g22380
rosa_chinensis	RchiOBHm_Chr5g0032781
rosa_laevigata	RLG00000033428
rosa_multiflora	Rmu_sc0002981.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047320 Rroxscaffold_1G00047780
rosa_rugosa	Rorug05G0133700 Rorug05G0133800 Rorug05G0133900
rosa_samantha	Rh5AG226500 Rh5BG227500 Rh5CG255300 Rh5DG232200
rosa_wichuraiana	Rw5G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AccBSI	CCGCTC	1 cut(s)	1393
AccII	CGCG	1 cut(s)	520
AciI	CCGC	2 cut(s)	413, 1391
AclWI	GGATC	2 cut(s)	643, 1109
AcsI	RAATTY	3 cut(s)	74, 786, 1147
AcuI	CTGAAG	4 cut(s)	597, 1199, 1212, 1332
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	3 cut(s)	102, 376, 382
AfiI	CCNNNNNNNGG	3 cut(s)	214, 239, 888
AgsI	TTSAA	8 cut(s)	94, 512, 791, 804, 860, 1174, 1258, 1413
AjnI	CCWGG	2 cut(s)	321, 760
AluBI	AGCT	9 cut(s)	107, 251, 954, 1130, 1170, 1273, 1307, 1334, 1430
AluI	AGCT	9 cut(s)	107, 251, 954, 1130, 1170, 1273, 1307, 1334, 1430
Alw21I	GWGCWC	2 cut(s)	370, 924
AlwI	GGATC	2 cut(s)	643, 1109
AlwNI	CAGNNNCTG	5 cut(s)	383, 611, 1273, 1310, 1334
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	1101
ApeKI	GCWGC	4 cut(s)	851, 1064, 1277, 1351
ApoI	RAATTY	3 cut(s)	74, 786, 1147
AseI	ATTAAT	1 cut(s)	831
Asp700I	GAANNNNTTC	1 cut(s)	306
Asp718I	GGTACC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	1005
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	1391
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	2 cut(s)	370, 924
BbvI	GCAGC	4 cut(s)	838, 1076, 1264, 1363
BccI	CCATC	4 cut(s)	342, 536, 652, 1410
BcgI	CGANNNNNNTGC	8 cut(s)	41, 75, 806, 840, 1022, 1053, 1056, 1087
BciT130I	CCWGG	2 cut(s)	323, 762
BfaI	CTAG	6 cut(s)	234, 252, 285, 315, 537, 678
BfmI	CTRYAG	2 cut(s)	246, 1062
BglI	GCCNNNNNGGC	1 cut(s)	998
BisI	GCNGC	4 cut(s)	852, 1065, 1278, 1352
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	4 cut(s)	853, 1066, 1279, 1353
Bme1390I	CCNGG	2 cut(s)	323, 762
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	323, 762
BmsI	GCATC	4 cut(s)	211, 694, 979, 1293
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	1293
Bpu1102I	GCTNAGC	1 cut(s)	108
Bsa29I	ATCGAT	2 cut(s)	1073, 1183
BsaBI	GATNNNNATC	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	123, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 239, 888
Bse1I	ACTGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	1104
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	2 cut(s)	323, 762
BseCI	ATCGAT	2 cut(s)	1073, 1183
BseDI	CCNNGG	2 cut(s)	123, 322
BseGI	GGATG	4 cut(s)	52, 353, 547, 710
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	3 cut(s)	214, 239, 888
BseMI	GCAATG	1 cut(s)	1104
BseMII	CTCAG	3 cut(s)	53, 99, 665
BseNI	ACTGG	1 cut(s)	714
BseXI	GCAGC	4 cut(s)	838, 1076, 1264, 1363
BseYI	CCCAGC	1 cut(s)	781
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	1103
BshNI	GGYRCC	1 cut(s)	100
BshVI	ATCGAT	2 cut(s)	1073, 1183
BsiHKAI	GWGCWC	2 cut(s)	370, 924
BsiHKCI	CYCGRG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	214, 239, 888
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	1103
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	3 cut(s)	370, 924, 1391
Bsp143I	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	413, 1391
BspANI	GGCC	1 cut(s)	1103
BspCNI	CTCAG	3 cut(s)	52, 100, 664
BspDI	ATCGAT	2 cut(s)	1073, 1183
BspFNI	CGCG	1 cut(s)	520
BspHI	TCATGA	2 cut(s)	559, 976
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	1066
BspPI	GGATC	2 cut(s)	643, 1109
BspQI	GCTCTTC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	100
BsrBI	CCGCTC	1 cut(s)	1393
BsrDI	GCAATG	1 cut(s)	1104
BsrI	ACTGG	1 cut(s)	714
BssECI	CCNNGG	2 cut(s)	123, 322
BssMI	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	323, 762
Bst4CI	ACNGT	8 cut(s)	143, 274, 307, 385, 486, 613, 724, 824
Bst6I	CTCTTC	5 cut(s)	17, 158, 454, 513, 928
BstACI	GRCGYC	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	851
BstC8I	GCNNGC	7 cut(s)	114, 417, 1275, 1282, 1391, 1395, 1428
BstDEI	CTNAG	4 cut(s)	39, 108, 651, 1293
BstF5I	GGATG	4 cut(s)	52, 353, 547, 710
BstFNI	CGCG	1 cut(s)	520
BstKTI	GATC	6 cut(s)	638, 909, 1013, 1117, 1183, 1187
BstMBI	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 851, 998
BstNI	CCWGG	2 cut(s)	323, 762
BstSCI	CCNGG	2 cut(s)	321, 760
BstSFI	CTRYAG	2 cut(s)	246, 1062
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	838, 1076, 1264, 1363
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
Bsu15I	ATCGAT	2 cut(s)	1073, 1183
BsuRI	GGCC	1 cut(s)	1103
BsuTUI	ATCGAT	2 cut(s)	1073, 1183
BtsCI	GGATG	4 cut(s)	52, 353, 547, 710
BtsIMutI	CAGTG	2 cut(s)	721, 829
Cac8I	GCNNGC	7 cut(s)	114, 417, 1275, 1282, 1391, 1395, 1428
CaiI	CAGNNNCTG	5 cut(s)	383, 611, 1273, 1310, 1334
CciI	TCATGA	2 cut(s)	559, 976
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	2 cut(s)	1073, 1183
CseI	GACGC	2 cut(s)	185, 483
Csp6I	GTAC	3 cut(s)	101, 375, 381
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviAII	CATG	3 cut(s)	560, 743, 977
CviQI	GTAC	3 cut(s)	101, 375, 381
DdeI	CTNAG	4 cut(s)	39, 108, 651, 1293
DpnI	GATC	6 cut(s)	637, 908, 1012, 1116, 1182, 1186
DpnII	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
Eam1104I	CTCTTC	5 cut(s)	17, 158, 454, 513, 928
EarI	CTCTTC	5 cut(s)	17, 158, 454, 513, 928
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	1391
Eco32I	GATATC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	4 cut(s)	597, 1199, 1212, 1332
Eco88I	CYCGRG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	786
EcoRII	CCWGG	2 cut(s)	321, 760
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	1391
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	563, 746, 980
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	3 cut(s)	559, 742, 976
FauI	CCCGC	1 cut(s)	1398
Fnu4HI	GCNGC	4 cut(s)	852, 1065, 1278, 1352
FokI	GGATG	4 cut(s)	59, 360, 554, 697
FriOI	GRGCYC	1 cut(s)	1391
Fsp4HI	GCNGC	4 cut(s)	852, 1065, 1278, 1352
FspBI	CTAG	6 cut(s)	234, 252, 285, 315, 537, 678
GluI	GCNGC	4 cut(s)	852, 1065, 1278, 1352
GsaI	CCCAGC	1 cut(s)	785
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	1103
HgaI	GACGC	2 cut(s)	185, 483
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	3 cut(s)	563, 746, 980
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HindIII	AAGCTT	1 cut(s)	1428
HphI	GGTGA	1 cut(s)	1005
Hpy166II	GTNNAC	3 cut(s)	170, 740, 1232
Hpy188I	TCNGA	8 cut(s)	153, 268, 447, 754, 958, 1192, 1242, 1312
Hpy8I	GTNNAC	3 cut(s)	170, 740, 1232
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	5 cut(s)	91, 431, 1098, 1115, 1237
HpyCH4III	ACNGT	8 cut(s)	143, 274, 307, 385, 486, 613, 724, 824
HpyCH4V	TGCA	6 cut(s)	116, 158, 839, 896, 1043, 1064
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 851, 998
HpyF3I	CTNAG	4 cut(s)	39, 108, 651, 1293
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	3 cut(s)	563, 746, 980
KpnI	GGTACC	1 cut(s)	104
Kzo9I	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	365, 1270
Lsp1109I	GCAGC	4 cut(s)	838, 1076, 1264, 1363
LweI	GCATC	4 cut(s)	211, 694, 979, 1293
MaeI	CTAG	6 cut(s)	234, 252, 285, 315, 537, 678
MaeIII	GTNAC	2 cut(s)	280, 317
MalI	GATC	6 cut(s)	637, 908, 1012, 1116, 1182, 1186
MbiI	CCGCTC	1 cut(s)	1393
MboI	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	3 cut(s)	370, 924, 1391
MluCI	AATT	5 cut(s)	74, 587, 786, 1147, 1208
MlyI	GAGTC	3 cut(s)	175, 471, 575
MmeI	TCCRAC	2 cut(s)	24, 1143
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	5 cut(s)	477, 831, 900, 1094, 1432
MspA1I	CMGCKG	2 cut(s)	107, 1130
MspR9I	CCNGG	2 cut(s)	323, 762
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	2 cut(s)	323, 762
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	3 cut(s)	113, 851, 998
NdeII	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
NlaIII	CATG	3 cut(s)	563, 746, 980
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	2 cut(s)	280, 317
PaeR7I	CTCGAG	1 cut(s)	24
PagI	TCATGA	2 cut(s)	559, 976
PciSI	GCTCTTC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	2 cut(s)	773, 921
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	7 cut(s)	515, 551, 749, 755, 856, 959, 1247
PfoI	TCCNGGA	1 cut(s)	760
PkrI	GCNGC	4 cut(s)	853, 1066, 1279, 1353
PleI	GAGTC	3 cut(s)	174, 470, 574
PpsI	GAGTC	3 cut(s)	174, 470, 574
PshBI	ATTAAT	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	321, 760
PspFI	CCCAGC	1 cut(s)	781
PspGI	CCWGG	2 cut(s)	321, 760
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	1066
PstNI	CAGNNNCTG	5 cut(s)	383, 611, 1273, 1310, 1334
PsuI	RGATCY	1 cut(s)	635
PvuII	CAGCTG	2 cut(s)	107, 1130
RsaI	GTAC	3 cut(s)	102, 376, 382
RsaNI	GTAC	3 cut(s)	101, 375, 381
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	5 cut(s)	477, 831, 900, 1094, 1432
SatI	GCNGC	4 cut(s)	852, 1065, 1278, 1352
Sau3AI	GATC	6 cut(s)	635, 906, 1010, 1114, 1180, 1184
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	3 cut(s)	175, 471, 575
ScrFI	CCNGG	2 cut(s)	323, 762
SduI	GDGCHC	3 cut(s)	370, 924, 1391
SfaNI	GCATC	4 cut(s)	211, 694, 979, 1293
SfcI	CTRYAG	2 cut(s)	246, 1062
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	242
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	5 cut(s)	74, 587, 786, 1147, 1208
SsiI	CCGC	2 cut(s)	413, 1391
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	6 cut(s)	234, 252, 285, 315, 537, 678
StyD4I	CCNGG	2 cut(s)	321, 760
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	8 cut(s)	143, 274, 307, 385, 486, 613, 724, 824
TaqI	TCGA	5 cut(s)	25, 61, 776, 1073, 1183
TasI	AATT	5 cut(s)	74, 587, 786, 1147, 1208
TfiI	GAWTC	7 cut(s)	515, 551, 749, 755, 856, 959, 1247
Tru1I	TTAA	5 cut(s)	477, 831, 900, 1094, 1432
Tru9I	TTAA	5 cut(s)	477, 831, 900, 1094, 1432
TscAI	CASTG	2 cut(s)	721, 829
TseFI	GTSAC	2 cut(s)	280, 317
TseI	GCWGC	4 cut(s)	851, 1064, 1277, 1351
Tsp45I	GTSAC	2 cut(s)	280, 317
TspRI	CASTG	2 cut(s)	721, 829
VpaK11BI	GGWCC	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	831
XapI	RAATTY	3 cut(s)	74, 786, 1147
XhoI	CTCGAG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	6 cut(s)	234, 252, 285, 315, 537, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.