Rorug05G0133900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004374
Physical Location & Seq
Reverse (-)
11944959 .. 11946041
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0133900.1

Sequence Viewer

Length: 1083 bp
ATGGATAAGTACAAGAACCTTGTCAAAGTCGTTGCAGTGCAAGATCTCATCCTGGCAAACCCCAGTGACCCTGCAGTTTCTGTTGATTTTCTCTCCAGGCTCTCCCAAAAGCTCCATCTCAACCGTGGTGCAGTCGCCTTCCTCCGCAAATACCCTCATATCTTCCACATATACCATGACCCAATAAAGGGACAGACCCGATGCACATTAACTGATACTGCTTTTCGAATTTCAGAAGAAGAAGCAGAGGCTATTAATGCCTCGTTGCCACTTATTGTTGATCGATTGGTTCGGCTTCTGTCCATGTCGACTTCCAAGATGTTGCCACTGCGCGCCATTTTTAAAGTTTGCAGGGAACTTGGGCTTCCTGATGATTTTGAGGAGTCTGTAATATCTAAAAACTCCCAGCTTTTTCAACTTTGCGATGCTCATGAACCCAACACTCATAACTTGAAACTGGTTGGTGCAATTTCTGACAAGTTTGTTGCAGCTGTTGAGAATTGGAGGGTAGAGGAATATTGCAAAGAGGGTTGCAGTGTTGATAGGGCTGAACTTCAGTTTAGTTTTAAGCATGGATATCCTCCAGGGATGAGGTTAAGAAAGAATTTTAGAGCCAAGGTTAAAGAATGGCAGAAGTTGCCATACATCGGGCCATATGATGAGGTCACAGAGAAGAGGTTGTCTAAAGCTGGAATGATAGTTGGGGAGAAACGAGCAGTTGCAATAGTTCATGAGTTCTTGAATCTGACAGTTGAGAGGATGGTTGAAGTGGAGAAAATCAGTCATTTCAGAAAATGGTTTGGGTTTGATTTGAATATAAGGGATTTGTTCCTGGATCACCCTGGGATGTTTTATTTGTCTACCAAGGGAAAGAGACACACTGTTTTTCTGAGAGAAGCTTATGAGAGAGGGTGTTTGATTCACCCAAATCCGGTTTATAATGCAAGGAGAAAGCTACTGGATCTTGTTGTTTTGGGACGTCATGATATGTTTACTGGTGACACAAAGATGAGGAGTATTGCTAATAGCAAGGAGGCTGAGTTTCTGGAGCAGTACAATGGAGAAACCTCCGACTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

360

Amino Acids

41.46

Weight (kDa)

8.73

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 1 - 327 2.8e-105 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AatII GACGTC 1 cut(s) 982
AccI GTMKAC 2 cut(s) 308, 860
AccII CGCG 1 cut(s) 333
AciI CCGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 843, 969
AcsI RAATTY 2 cut(s) 228, 604
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 979
AfaI GTAC 2 cut(s) 11, 1055
AfiI CCNNNNNNNGG 4 cut(s) 187, 188, 647, 931
AgsI TTSAA 5 cut(s) 416, 454, 742, 767, 814
AjnI CCWGG 5 cut(s) 51, 95, 583, 831, 841
AluBI AGCT 6 cut(s) 112, 409, 491, 689, 899, 955
AluI AGCT 6 cut(s) 112, 409, 491, 689, 899, 955
Alw26I GTCTC 1 cut(s) 868
AlwI GGATC 2 cut(s) 843, 969
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 1 cut(s) 650
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 2 cut(s) 228, 604
AseI ATTAAT 1 cut(s) 255
AspLEI GCGC 2 cut(s) 333, 335
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 3 cut(s) 830, 914, 1010
AsuII TTCGAA 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbvI GCAGC 1 cut(s) 500
BccI CCATC 2 cut(s) 123, 754
BciT130I CCWGG 5 cut(s) 53, 97, 585, 833, 843
BcoDI GTCTC 1 cut(s) 868
BfmI CTRYAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 43
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 5 cut(s) 53, 97, 585, 833, 843
BmgT120I GGNCC 1 cut(s) 650
BmrFI CCNGG 5 cut(s) 53, 97, 585, 833, 843
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 191, 415
BmuI ACTGGG 1 cut(s) 57
BpmI CTGGAG 3 cut(s) 79, 567, 1067
Bpu14I TTCGAA 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 979
BsaJI CCNNGG 6 cut(s) 124, 584, 615, 841, 842, 864
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 2 cut(s) 1025, 1055
Bsc4I CCNNNNNNNGG 4 cut(s) 187, 188, 647, 931
Bse1I ACTGG 4 cut(s) 63, 462, 963, 1000
BseBI CCWGG 5 cut(s) 53, 97, 585, 833, 843
BseCI ATCGAT 1 cut(s) 283
BseDI CCNNGG 6 cut(s) 124, 584, 615, 841, 842, 864
BseGI GGATG 4 cut(s) 48, 594, 765, 852
BseLI CCNNNNNNNGG 4 cut(s) 187, 188, 647, 931
BseMII CTCAG 2 cut(s) 881, 1029
BseNI ACTGG 4 cut(s) 63, 462, 963, 1000
BsePI GCGCGC 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 395, 1027
BseXI GCAGC 1 cut(s) 500
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 1 cut(s) 652
BshVI ATCGAT 1 cut(s) 283
BsiSI CCGG 1 cut(s) 932
BslFI GGGAC 2 cut(s) 204, 990
BslI CCNNNNNNNGG 4 cut(s) 187, 188, 647, 931
BsmAI GTCTC 1 cut(s) 868
BsmFI GGGAC 2 cut(s) 204, 990
BsnI GGCC 1 cut(s) 652
Bsp119I TTCGAA 1 cut(s) 226
Bsp143I GATC 4 cut(s) 43, 280, 835, 961
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 652
BspCNI CTCAG 2 cut(s) 882, 1030
BspDI ATCGAT 1 cut(s) 283
BspFNI CGCG 1 cut(s) 333
BspHI TCATGA 3 cut(s) 430, 730, 982
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 843, 969
BspT104I TTCGAA 1 cut(s) 226
BsrI ACTGG 4 cut(s) 63, 462, 963, 1000
BssECI CCNNGG 6 cut(s) 124, 584, 615, 841, 842, 864
BssHII GCGCGC 1 cut(s) 331
BssMI GATC 4 cut(s) 43, 280, 835, 961
BssNI GRCGYC 1 cut(s) 979
BssT1I CCWWGG 2 cut(s) 615, 864
Bst2UI CCWGG 5 cut(s) 53, 97, 585, 833, 843
Bst4CI ACNGT 3 cut(s) 125, 751, 883
Bst6I CTCTTC 1 cut(s) 668
BstACI GRCGYC 1 cut(s) 979
BstAPI GCANNNNNTGC 1 cut(s) 637
BstBI TTCGAA 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 890, 1038
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 4 cut(s) 48, 594, 765, 852
BstFNI CGCG 1 cut(s) 333
BstHHI GCGC 2 cut(s) 333, 335
BstKTI GATC 4 cut(s) 46, 283, 838, 964
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 4 cut(s) 43, 280, 835, 961
BstMWI GCNNNNNNNGC 2 cut(s) 257, 637
BstNI CCWGG 5 cut(s) 53, 97, 585, 833, 843
BstSCI CCNGG 5 cut(s) 51, 95, 583, 831, 841
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 43, 961
BstYI RGATCY 2 cut(s) 43, 961
Bsu15I ATCGAT 1 cut(s) 283
BsuRI GGCC 1 cut(s) 652
BsuTUI ATCGAT 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 4 cut(s) 48, 594, 765, 852
BtsI GCAGTG 3 cut(s) 42, 326, 541
BtsIMutI CAGTG 5 cut(s) 42, 70, 326, 541, 879
Cac8I GCNNGC 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 80
CciI TCATGA 3 cut(s) 430, 730, 982
CfoI GCGC 2 cut(s) 333, 335
Cfr13I GGNCC 1 cut(s) 650
ClaI ATCGAT 1 cut(s) 283
Csp6I GTAC 2 cut(s) 10, 1054
CviAII CATG 6 cut(s) 176, 304, 431, 572, 731, 983
CviQI GTAC 2 cut(s) 10, 1054
DdeI CTNAG 2 cut(s) 890, 1038
DpnI GATC 4 cut(s) 45, 282, 837, 963
DpnII GATC 4 cut(s) 43, 280, 835, 961
DraI TTTAAA 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
Eco130I CCWWGG 2 cut(s) 615, 864
Eco32I GATATC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 539
EcoRII CCWGG 5 cut(s) 51, 95, 583, 831, 841
EcoRV GATATC 1 cut(s) 578
EcoT14I CCWWGG 2 cut(s) 615, 864
ErhI CCWWGG 2 cut(s) 615, 864
FaeI CATG 6 cut(s) 179, 307, 434, 575, 734, 986
FaqI GGGAC 2 cut(s) 204, 990
FatI CATG 6 cut(s) 175, 303, 430, 571, 730, 982
FauNDI CATATG 1 cut(s) 655
FblI GTMKAC 2 cut(s) 308, 860
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 4 cut(s) 35, 601, 772, 859
Fsp4HI GCNGC 1 cut(s) 489
GlaI GCGC 2 cut(s) 332, 334
GluI GCNGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 3 cut(s) 79, 567, 1067
HaeIII GGCC 1 cut(s) 652
HapII CCGG 1 cut(s) 932
HhaI GCGC 2 cut(s) 333, 335
Hin1I GRCGYC 1 cut(s) 979
Hin1II CATG 6 cut(s) 179, 307, 434, 575, 734, 986
Hin6I GCGC 2 cut(s) 331, 333
HinP1I GCGC 2 cut(s) 331, 333
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 4 cut(s) 383, 742, 919, 1073
HpaII CCGG 1 cut(s) 932
HphI GGTGA 3 cut(s) 830, 914, 1010
Hpy166II GTNNAC 3 cut(s) 309, 861, 993
Hpy188I TCNGA 7 cut(s) 235, 475, 747, 791, 891, 1072, 1078
Hpy188III TCNNGA 6 cut(s) 368, 431, 731, 739, 983, 1046
Hpy8I GTNNAC 3 cut(s) 309, 861, 993
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 3 cut(s) 125, 751, 883
HpyCH4IV ACGT 1 cut(s) 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 637
HpyF3I CTNAG 2 cut(s) 890, 1038
HpySE526I ACGT 1 cut(s) 979
Hsp92I GRCGYC 1 cut(s) 979
Hsp92II CATG 6 cut(s) 179, 307, 434, 575, 734, 986
HspAI GCGC 2 cut(s) 331, 333
Kzo9I GATC 4 cut(s) 43, 280, 835, 961
LmnI GCTCC 2 cut(s) 117, 1048
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 2 cut(s) 191, 415
MaeII ACGT 1 cut(s) 979
MaeIII GTNAC 3 cut(s) 65, 664, 998
MalI GATC 4 cut(s) 45, 282, 837, 963
MboI GATC 4 cut(s) 43, 280, 835, 961
MboII GAAGA 4 cut(s) 154, 248, 251, 685
MflI RGATCY 2 cut(s) 43, 961
MluCI AATT 4 cut(s) 228, 468, 499, 604
MlyI GAGTC 2 cut(s) 392, 1067
MseI TTAA 6 cut(s) 209, 255, 342, 567, 596, 621
MslI CAYNNNNRTG 1 cut(s) 1007
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 932
MspR9I CCNGG 5 cut(s) 53, 97, 585, 833, 843
MvaI CCWGG 5 cut(s) 53, 97, 585, 833, 843
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 257, 637
NdeI CATATG 1 cut(s) 655
NdeII GATC 4 cut(s) 43, 280, 835, 961
NlaIII CATG 6 cut(s) 179, 307, 434, 575, 734, 986
NmuCI GTSAC 3 cut(s) 65, 664, 998
NspV TTCGAA 1 cut(s) 226
PagI TCATGA 3 cut(s) 430, 730, 982
PasI CCCWGGG 1 cut(s) 842
PauI GCGCGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 742, 919
PfoI TCCNGGA 1 cut(s) 831
PkrI GCNGC 1 cut(s) 490
PleI GAGTC 2 cut(s) 391, 1067
PpsI GAGTC 2 cut(s) 391, 1067
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 939
Psp6I CCWGG 5 cut(s) 51, 95, 583, 831, 841
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 5 cut(s) 51, 95, 583, 831, 841
PspPI GGNCC 1 cut(s) 650
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 2 cut(s) 43, 961
PteI GCGCGC 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 2 cut(s) 11, 1055
RsaNI GTAC 2 cut(s) 10, 1054
RseI CAYNNNNRTG 1 cut(s) 1007
SalI GTCGAC 1 cut(s) 307
SaqAI TTAA 6 cut(s) 209, 255, 342, 567, 596, 621
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 4 cut(s) 43, 280, 835, 961
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 2 cut(s) 392, 1067
ScrFI CCNGG 5 cut(s) 53, 97, 585, 833, 843
SfaNI GCATC 2 cut(s) 191, 415
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 1007
Sse9I AATT 4 cut(s) 228, 468, 499, 604
SsiI CCGC 1 cut(s) 145
SspI AATATT 1 cut(s) 518
StyD4I CCNGG 5 cut(s) 51, 95, 583, 831, 841
StyI CCWWGG 2 cut(s) 615, 864
TaaI ACNGT 3 cut(s) 125, 751, 883
TaiI ACGT 1 cut(s) 982
TaqI TCGA 3 cut(s) 226, 283, 308
TasI AATT 4 cut(s) 228, 468, 499, 604
TatI WGTACW 2 cut(s) 9, 1053
TfiI GAWTC 2 cut(s) 742, 919
Tru1I TTAA 6 cut(s) 209, 255, 342, 567, 596, 621
Tru9I TTAA 6 cut(s) 209, 255, 342, 567, 596, 621
TscAI CASTG 5 cut(s) 42, 70, 333, 541, 886
TseFI GTSAC 3 cut(s) 65, 664, 998
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 3 cut(s) 65, 664, 998
TspDTI ATGAA 2 cut(s) 447, 719
TspRI CASTG 5 cut(s) 42, 70, 333, 541, 886
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 2 cut(s) 228, 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 2 cut(s) 308, 860
ZraI GACGTC 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.