Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004374

Physical Location & Seq

Genomic Coordinates Reverse (-)

11941900 .. 11944264

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0133800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAACTCAATCAACATAACTGCCAATCATTTTTTGTTTGTTGTGCAAGCCTCATTCTTTGTGTGTTTCAATGTTGCAGCTATGCAGAGCCAGCTTGTGTGTAGTGGTTGTAGGAGCATTCTTCTATATCCTAGAGGAGCTTCAAATGTTTGTTGTGCATTATGCAATACAGTTACCCCAGTCCCTCCTCCTGGTACGGAAATGGCTCAACTTATTTGTGGGGGCTGCAGGACATTGTTAATGCATACACGCGGGGCAACAAGTGTGAGATGCTCCTGCTGTCATACAGTCAATCTTGCTCCAGCAGCCAATCAGTTTGCCCACATCAACTGTGGGAACTGCCGGACAACGCTTATGTATCCATATGGGGCTCCTTCAGTTAAATGTGCAGTCTGTCAGTTTGTTACCAATGTTGGTATGGGCAATACGAGGGTTCCAATTCCAGTTCACAGACCCTCTACTTCAGCATCAATGCCTCATTCTCAGAGCCAGACTGTTGTCGTTGAGAACCCTATGTCTGTTGATGAGAGTGGCAAATTGGTGAGCAACGTCGTCGTTGGTGTCACGACAGGGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

193

Amino Acids

20.41

Weight (kDa)

8.89

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	34 - 58	3.4e-11	LSD1 zinc finger
zf-LSD1	PF06943	73 - 97	3.8e-12	LSD1 zinc finger
zf-LSD1	PF06943	111 - 135	9.1e-15	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15220
fragaria_vesca	FvH4_3g19600 FvH4_3g19600 FvH4_3g19600 FvH4_3g19600
malus_domestica	MD03G1231300.v1.1 MD11G1252300.v1.1
prunus_persica	Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1 Prupe.4G176700_v2.0.a1
pyrus_communis	pycom03g17880 pycom11g22380
rosa_chinensis	RchiOBHm_Chr5g0032781
rosa_laevigata	RLG00000033428
rosa_multiflora	Rmu_sc0002981.1_g000001
rosa_roxburghii	Rroxscaffold_1G00047320 Rroxscaffold_1G00047780
rosa_rugosa	Rorug05G0133700 Rorug05G0133800 Rorug05G0133900
rosa_samantha	Rh5AG226500 Rh5BG227500 Rh5CG255300 Rh5DG232200
rosa_wichuraiana	Rw5G020770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	252
AciI	CCGC	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	360, 447
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	70, 144
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	80, 94, 140
AluI	AGCT	3 cut(s)	80, 94, 140
ApeKI	GCWGC	3 cut(s)	77, 225, 305
AsuHPI	GGTGA	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	89, 212, 317
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BciT130I	CCWGG	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	3 cut(s)	78, 226, 306
BlsI	GCNGC	3 cut(s)	79, 227, 307
Bme1390I	CCNGG	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	372, 435
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	260, 476
BmuI	ACTGGG	1 cut(s)	173
BoxI	GACNNNNGTC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	179, 443
BseBI	CCWGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	179, 443
BseRI	GAGGAG	2 cut(s)	150, 177
BseXI	GCAGC	3 cut(s)	89, 212, 317
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	372, 435
BspMAI	CTGCAG	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	179, 443
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	172, 289, 332, 496
BstC8I	GCNNGC	2 cut(s)	48, 92
BstDEI	CTNAG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 305
BstNI	CCWGG	1 cut(s)	192
BstPAI	GACNNNNGTC	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	89, 212, 317
BsuI	GTATCC	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	48, 92
Csp6I	GTAC	1 cut(s)	195
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	360, 447
EcoRII	CCWGG	1 cut(s)	190
EcoT22I	ATGCAT	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	373
FaqI	GGGAC	1 cut(s)	167
FauI	CCCGC	1 cut(s)	245
FauNDI	CATATG	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	78, 226, 306
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	3 cut(s)	78, 226, 306
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	3 cut(s)	78, 226, 306
GsuI	CTGGAG	1 cut(s)	285
HapII	CCGG	1 cut(s)	343
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	1 cut(s)	565
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	2 cut(s)	554, 557
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	4 cut(s)	172, 289, 332, 496
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	8 cut(s)	46, 77, 85, 158, 165, 228, 244, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 305
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	549
LmnI	GCTCC	5 cut(s)	114, 137, 278, 304, 376
Lsp1109I	GCAGC	3 cut(s)	89, 212, 317
LweI	GCATC	2 cut(s)	260, 476
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	172, 403, 562
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	2 cut(s)	438, 536
MnlI	CCTC	7 cut(s)	61, 128, 195, 198, 423, 466, 486
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	2 cut(s)	239, 381
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	91, 305
NdeI	CATATG	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	372, 435
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	246
PctI	GAATGC	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	79, 227, 307
PshAI	GACNNNNGTC	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	372, 435
PstI	CTGCAG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	239, 381
SatI	GCNGC	3 cut(s)	78, 226, 306
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	4 cut(s)	82, 96, 142, 552
SfaNI	GCATC	2 cut(s)	260, 476
SfcI	CTRYAG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	438, 536
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	4 cut(s)	172, 289, 332, 496
TaiI	ACGT	1 cut(s)	552
TasI	AATT	2 cut(s)	438, 536
Tru1I	TTAA	2 cut(s)	239, 381
Tru9I	TTAA	2 cut(s)	239, 381
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	3 cut(s)	77, 225, 305
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	2 cut(s)	329, 415
XspI	CTAG	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.