pycom03g18490

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
19480246 .. 19480470
225 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGATGGGTAGCCTCAAATTCTGGTTCTACCTTCTACTCATTTTGCTTTCTTTTTCAGGTTCTGATCAAGCTCGTTCTCCAGTGCCATTTTCAGACAGAAGTAACAAACGAGCTATGATGGAGAGTGCCAAACAAGTGCTGAAGGCTAGCAGTGAAACACAAGTCGGAAAACCTTTCGAGTCCAAAAGGCCGAGTCCGGGAGGACCTGATCCGCAACATCATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.25

Weight (kDa)

9.87

Isoelectric Point (pI)

74.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73165
prunus_persica Prupe.4G170900_v2.0.a1
pyrus_communis pycom03g18490
rosa_roxburghii Rroxscaffold_1G00048780
rosa_samantha Rh5BG219100 Rh5CG242600 Rh5DG224500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 71, 113
AluI AGCT 2 cut(s) 71, 113
AlwI GGATC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 198
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 203
BccI CCATC 1 cut(s) 112
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 198
BmtI GCTAGC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 80
BshFI GGCC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 64, 208
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 80
BssMI GATC 2 cut(s) 64, 208
BstC8I GCNNGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 67, 211
BstMBI GATC 2 cut(s) 64, 208
BstSCI CCNGG 1 cut(s) 196
BsuRI GGCC 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 87, 157
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 203
CviJI RGCY 5 cut(s) 12, 71, 113, 146, 190
CviKI_1 RGCY 5 cut(s) 12, 71, 113, 146, 190
DpnI GATC 2 cut(s) 66, 210
DpnII GATC 2 cut(s) 64, 208
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 203
FaiI YATR 1 cut(s) 116
FbaI TGATCA 1 cut(s) 64
FspBI CTAG 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 197
HinfI GANTC 2 cut(s) 179, 193
HpaII CCGG 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 64, 94, 167
HpyAV CCTTC 2 cut(s) 41, 136
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 64, 208
LpnPI CCDG 5 cut(s) 7, 42, 93, 210, 219
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 66, 210
MboI GATC 2 cut(s) 64, 208
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 188, 202
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 23, 194
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 198
NciI CCSGG 1 cut(s) 198
NdeII GATC 2 cut(s) 64, 208
NheI GCTAGC 1 cut(s) 146
NmeAIII GCCGAG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 196
PleI GAGTC 2 cut(s) 187, 201
PpsI GAGTC 2 cut(s) 187, 201
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspPI GGNCC 1 cut(s) 203
PspPPI RGGWCCY 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 62
Sau3AI GATC 2 cut(s) 64, 208
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 188, 202
ScrFI CCNGG 1 cut(s) 198
SetI ASST 6 cut(s) 33, 61, 73, 115, 175, 208
SinI GGWCC 1 cut(s) 203
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 17
TscAI CASTG 2 cut(s) 87, 157
TspRI CASTG 2 cut(s) 87, 157
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 17
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.