Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0022536

Physical Location & Seq

Genomic Coordinates Forward (+)

22388536 .. 22390759

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22210.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCGCAATGAGTGGCCTCGCTACGAGCTCCACTCCTTGTCGGTTACTCGCATTTCCAATACGACGCCGTTTCCGGGACCACTCGTCTTCGCGCTCCGTGGTCATCAGTAAACCTCCTTCCAGAGCTCCCAGACTCATTTGCATGGCGGAGCCTTATTTGATTACAAAGCTTGATTCTGCAGAGAAGACGTGGAAGGATTTATCGGTCAAGCTGGCTGATCCAGATGTCGTGTCAAATCCCAGTGAATACCAGAAGCTTGCGCAGTCTGTGGCAGAGCTTGATGAGGTCGTGACAATCTATAGGGATTTCAAAGACTGCGAGAAGCAGTTAGAAGAGACTAAAGCTTTAGCAAAAGAAGCTGGCAATGATGAGGATATGGCAGAGATGATAGCTTTTGAACTTGAATCTTTATCCAATCAAATCAAAGAACTTGAAGCGAAGCTCAAGATGCTACTCCTTCCTAGTGACCCTCTTGATGCAAGAAATATAATGCTTGAAGTAAGGGCTGGTACTGGTGGTGATGAAGCTGGAATTTGGGCAGGTCGATCTTGTCCGTATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

189

Amino Acids

20.85

Weight (kDa)

5.11

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022536)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g22210
rosa_chinensis	RchiOBHm_Chr6g0260181
rosa_samantha	Rh4AG093700
rosa_wichuraiana	Rw2G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	533
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	6, 149
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	5 cut(s)	313, 401, 407, 437, 500
AhdI	GACNNNNNGTC	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	192
Alw21I	GWGCWC	2 cut(s)	32, 130
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	3, 16
ApoI	RAATTY	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	96, 265
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	32, 130
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	2 cut(s)	81, 194
Bbv12I	GWGCWC	2 cut(s)	32, 130
BceAI	ACGGC	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	2 cut(s)	180, 301
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	79
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	80, 153
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	441, 469
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	2 cut(s)	81, 194
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	243, 520
Bse3DI	GCAATG	2 cut(s)	15, 373
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	15, 373
BseNI	ACTGG	2 cut(s)	243, 520
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	5, 18
BsiHKAI	GWGCWC	2 cut(s)	32, 130
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	5, 18
Bsp1286I	GDGCHC	2 cut(s)	32, 130
Bsp143I	GATC	2 cut(s)	220, 548
BspACI	CCGC	2 cut(s)	6, 149
BspANI	GGCC	2 cut(s)	5, 18
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	80, 153
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	1 cut(s)	215
BsrDI	GCAATG	2 cut(s)	15, 373
BsrI	ACTGG	2 cut(s)	243, 520
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	220, 548
BssNI	GRCGYC	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	3 cut(s)	216, 261, 364
BstDSI	CCRYGG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	96, 265
BstKTI	GATC	2 cut(s)	223, 551
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	220, 548
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 451
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	2 cut(s)	180, 301
BstUI	CGCG	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	81, 194
BsuRI	GGCC	2 cut(s)	5, 18
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	216, 261, 364
CfoI	GCGC	2 cut(s)	96, 265
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	1 cut(s)	145
CviQI	GTAC	1 cut(s)	513
DpnI	GATC	2 cut(s)	222, 550
DpnII	GATC	2 cut(s)	220, 548
DriI	GACNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	2 cut(s)	30, 128
Eco24I	GRGCYC	2 cut(s)	32, 130
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	2 cut(s)	30, 128
EcoICRI	GAGCTC	2 cut(s)	30, 128
EcoT38I	GRGCYC	2 cut(s)	32, 130
FaeI	CATG	1 cut(s)	148
FaiI	YATR	6 cut(s)	146, 303, 380, 491, 561, 565
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	2 cut(s)	32, 130
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	465
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	2 cut(s)	95, 264
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	5, 18
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	96, 265
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	94, 263
HinP1I	GCGC	2 cut(s)	94, 263
HindIII	AAGCTT	3 cut(s)	170, 257, 345
HinfI	GANTC	3 cut(s)	135, 176, 407
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188III	TCNNGA	5 cut(s)	123, 224, 292, 448, 476
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	3 cut(s)	129, 190, 470
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	144, 182, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 451
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	2 cut(s)	94, 263
Kzo9I	GATC	2 cut(s)	220, 548
LmnI	GCTCC	4 cut(s)	35, 101, 133, 151
LweI	GCATC	2 cut(s)	441, 469
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	45, 292, 467
MalI	GATC	2 cut(s)	222, 550
MboI	GATC	2 cut(s)	220, 548
MboII	GAAGA	3 cut(s)	81, 199, 347
MhlI	GDGCHC	2 cut(s)	32, 130
MluCI	AATT	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	29, 126, 280, 367, 483
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	359, 451
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	220, 548
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	80, 153
NmuCI	GTSAC	2 cut(s)	292, 467
NsbI	TGCGCA	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	176, 407
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp124BI	GAGCTC	2 cut(s)	32, 130
PspN4I	GGNNCC	2 cut(s)	80, 153
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	2 cut(s)	32, 130
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	220, 548
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	32, 130
SfaNI	GCATC	2 cut(s)	441, 469
SfcI	CTRYAG	2 cut(s)	180, 301
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	2 cut(s)	6, 149
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	2 cut(s)	32, 130
StyD4I	CCNGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	547
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	534
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	176, 407
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	292, 467
Tsp45I	GTSAC	2 cut(s)	292, 467
TspDTI	ATGAA	1 cut(s)	540
TspGWI	ACGGA	2 cut(s)	88, 546
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	534
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.