Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0022536

Physical Location & Seq

Genomic Coordinates Forward (+)

10250959 .. 10252224

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G010120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGTGGCCTCACCACCACGTCCGCACCGCCGCGATTACTCGCAATCCCAGCACGACACCGTTTCACCGACAATTCATGGACTTCCATCGCCATCCCCAAACCTCATCTCAGAGCTCCACGAATCATTTGCATGGAGGCGCCGTATTTGATTACGAAGCTGGAATCTGCAGAGAAGACATGGAAGGCATTATCGGTTGTGTCAATCTGTAAGGAATATGAGGACTGTGAGAAGCAGTTAGAAGAGAGTAAAGCTTTAGTGGATGAAGATGGCAATGATGAAGAAATGGCAGCAATGATATCGTATGAAATTGAGTCTTTGTCCAATCAAATGATAGAACTTGAGGAGAAGCTTAAGGATTTGCAGAATTTGCAGTCAGTTGTCCAACAATGTCTGCAGGACCAAAGTATGAGTACGGATGTGTTGATGGAGTTAACATTCAAGAAACCAATAGAGGCTTCTGCTCCAAAATTTGTGGAATATTTAATGGACTGGATTGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

168

Amino Acids

19.16

Weight (kDa)

4.62

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022536)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g22210
rosa_chinensis	RchiOBHm_Chr6g0260181
rosa_samantha	Rh4AG093700
rosa_wichuraiana	Rw2G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AccII	CGCG	1 cut(s)	34
AciI	CCGC	3 cut(s)	24, 29, 32
AcsI	RAATTY	3 cut(s)	367, 470, 501
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	415
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	442, 500
AjiI	CACGTC	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
AluBI	AGCT	4 cut(s)	116, 160, 254, 352
AluI	AGCT	4 cut(s)	116, 160, 254, 352
Alw21I	GWGCWC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	3 cut(s)	367, 470, 501
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	2 cut(s)	4, 58
AvaII	GGWCC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	4 cut(s)	95, 101, 263, 421
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	4 cut(s)	111, 145, 282, 316
BfmI	CTRYAG	2 cut(s)	168, 395
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	2 cut(s)	32, 291
BlsI	GCNGC	2 cut(s)	33, 292
Bme18I	GGWCC	1 cut(s)	400
BmgBI	CACGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	280, 300
BseGI	GGATG	3 cut(s)	93, 268, 424
BseMI	GCAATG	2 cut(s)	280, 300
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	118
BspACI	CCGC	3 cut(s)	24, 29, 32
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	2 cut(s)	172, 399
BspT107I	GGYRCC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	280, 300
BsrI	ACTGG	1 cut(s)	497
BssNI	GRCGYC	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	62, 227
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	3 cut(s)	93, 268, 424
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 370
BstSFI	CTRYAG	2 cut(s)	168, 395
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	93, 268, 424
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	414
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	3 cut(s)	78, 133, 180
CviJI	RGCY	6 cut(s)	9, 116, 160, 254, 352, 458
CviKI_1	RGCY	6 cut(s)	9, 116, 160, 254, 352, 458
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	110
DinI	GGCGCC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
FaeI	CATG	3 cut(s)	81, 136, 183
FaiI	YATR	6 cut(s)	79, 134, 181, 219, 306, 410
FatI	CATG	3 cut(s)	77, 132, 179
Fnu4HI	GCNGC	2 cut(s)	32, 291
FokI	GGATG	3 cut(s)	80, 275, 431
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	32, 291
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	2 cut(s)	32, 291
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	81, 136, 183
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	2 cut(s)	252, 350
HinfI	GANTC	3 cut(s)	123, 164, 314
HpaI	GTTAAC	1 cut(s)	435
HphI	GGTGA	2 cut(s)	4, 58
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	62, 227
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	5 cut(s)	132, 170, 364, 373, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 370
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	81, 136, 183
HspAI	GCGC	1 cut(s)	140
KasI	GGCGCC	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	121, 469
LpnPI	CCDG	4 cut(s)	63, 146, 383, 478
Lsp1109I	GCAGC	1 cut(s)	302
MaeII	ACGT	1 cut(s)	20
MboII	GAAGA	4 cut(s)	187, 254, 278, 293
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	5 cut(s)	73, 309, 367, 470, 501
Mly113I	GGCGCC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	6 cut(s)	20, 114, 130, 214, 337, 448
MseI	TTAA	3 cut(s)	354, 434, 485
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	50, 370
NarI	GGCGCC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	81, 136, 183
NlaIV	GGNNCC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	123, 164
PkrI	GCNGC	2 cut(s)	33, 292
PleI	GAGTC	1 cut(s)	322
PluTI	GGCGCC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	1 cut(s)	400
PstI	CTGCAG	2 cut(s)	172, 399
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	354, 434, 485
SatI	GCNGC	2 cut(s)	32, 291
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	6 cut(s)	23, 106, 118, 162, 256, 354
SfcI	CTRYAG	2 cut(s)	168, 395
SfoI	GGCGCC	1 cut(s)	141
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	341, 353
SmoI	CTYRAG	2 cut(s)	341, 353
Sse9I	AATT	5 cut(s)	73, 309, 367, 470, 501
SsiI	CCGC	3 cut(s)	24, 29, 32
SspDI	GGCGCC	1 cut(s)	139
SspI	AATATT	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	62, 227
TaiI	ACGT	1 cut(s)	23
TasI	AATT	5 cut(s)	73, 309, 367, 470, 501
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	123, 164
Tru1I	TTAA	3 cut(s)	354, 434, 485
Tru9I	TTAA	3 cut(s)	354, 434, 485
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	66, 279, 294, 321
TspGWI	ACGGA	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	3 cut(s)	367, 470, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.