Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0022536

Physical Location & Seq

Genomic Coordinates Reverse (-)

19838024 .. 19839168

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGTGGCCTCACCACCACCTCCGCACCGCCGCGATTACTCGCAATCCCAGCACGACACCGTTTCACTGACAATTCATGTACTTCCATCGCCATCCCCAAACCTCATCTCAGAGCTCCACGAATCATTTGCATGGCGGCGCCGTATTTGATTACGAAGCTAGAATCTGCAGAGAAGACATGGAAGGAATTATCGGTTGTGTCAATCTATAAGGAATATAAGGACTGTGAGAAGCAGTTAGAAGAGAGTAAAGCTTTAGCAGATGAAGATGGCAATGATGAAGAAATGGCAGCAATGATATCGTATGAAATTGAGTCTTTGTCCAATCAAATGAAAGAACTTGAGGAGAAGCTTAAGGAAATCTGCCATTCTTGCATACAACACCAAACTGGTGAAAAAAGAAAGAAAAGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

138

Amino Acids

15.71

Weight (kDa)

6.44

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	57 - 121	8.6e-06	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022536)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g22210
rosa_chinensis	RchiOBHm_Chr6g0260181
rosa_samantha	Rh4AG093700
rosa_wichuraiana	Rw2G010120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AccII	CGCG	1 cut(s)	34
AciI	CCGC	4 cut(s)	24, 29, 32, 137
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	353
AluBI	AGCT	4 cut(s)	116, 160, 254, 352
AluI	AGCT	4 cut(s)	116, 160, 254, 352
Alw21I	GWGCWC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	4, 404
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	3 cut(s)	95, 101, 263
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	4 cut(s)	111, 145, 282, 316
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	3 cut(s)	32, 138, 291
BlsI	GCNGC	3 cut(s)	33, 139, 292
BmiI	GGNNCC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	2 cut(s)	280, 300
BseGI	GGATG	1 cut(s)	93
BseMI	GCAATG	2 cut(s)	280, 300
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	118
BspACI	CCGC	4 cut(s)	24, 29, 32, 137
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	139
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	280, 300
BsrI	ACTGG	1 cut(s)	394
BssNI	GRCGYC	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	62, 227
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 372
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	3 cut(s)	78, 133, 180
CviJI	RGCY	5 cut(s)	9, 116, 160, 254, 352
CviKI_1	RGCY	5 cut(s)	9, 116, 160, 254, 352
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	110
DinI	GGCGCC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
FaeI	CATG	3 cut(s)	81, 136, 183
FaiI	YATR	8 cut(s)	79, 134, 181, 210, 219, 306, 377, 415
FatI	CATG	3 cut(s)	77, 132, 179
Fnu4HI	GCNGC	3 cut(s)	32, 138, 291
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	32, 138, 291
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	32, 138, 291
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	81, 136, 183
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HindIII	AAGCTT	2 cut(s)	252, 350
HinfI	GANTC	3 cut(s)	123, 164, 314
HphI	GGTGA	2 cut(s)	4, 404
Hpy188I	TCNGA	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	62, 227
HpyCH4V	TGCA	3 cut(s)	132, 170, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 372
HpyF3I	CTNAG	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	81, 136, 183
HspAI	GCGC	1 cut(s)	140
KasI	GGCGCC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	63, 375
Lsp1109I	GCAGC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	161
MboII	GAAGA	4 cut(s)	187, 254, 278, 293
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	3 cut(s)	73, 188, 309
Mly113I	GGCGCC	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	20, 31, 114, 337
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	50, 372
NarI	GGCGCC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	81, 136, 183
NlaIV	GGNNCC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	123, 164
PkrI	GCNGC	3 cut(s)	33, 139, 292
PleI	GAGTC	1 cut(s)	322
PluTI	GGCGCC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	3 cut(s)	32, 138, 291
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	6 cut(s)	23, 106, 118, 162, 256, 354
SfcI	CTRYAG	1 cut(s)	168
SfoI	GGCGCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	341, 353
SmoI	CTYRAG	2 cut(s)	341, 353
Sse9I	AATT	3 cut(s)	73, 188, 309
SsiI	CCGC	4 cut(s)	24, 29, 32, 137
SspDI	GGCGCC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	62, 227
TasI	AATT	3 cut(s)	73, 188, 309
TatI	WGTACW	1 cut(s)	80
TauI	GCSGC	2 cut(s)	34, 140
TfiI	GAWTC	2 cut(s)	123, 164
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	5 cut(s)	66, 279, 294, 321, 347
TspRI	CASTG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	353
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.