Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0020850

Physical Location & Seq

Genomic Coordinates Forward (+)

3733492 .. 3734523

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTGCTGGAGCACGTGCAACATGAATGTTTTCCATCATCTACCAACGAGGGGACTTCGCCAGTATCTGGACATATGGCATTGCCAGCGTCTACAGTTTCTGGTATTCGGAGTCTGAATACTAAAGAAGCAAATGACGACCGTGGGTTGCTTCAATACTTACCGCCACATCTGCAGACCTTATTTCCTCCTCCAAATTCGTATCTTCATGAAAAGCAGTCACCACTTTCTTTTGAATTTGGTGGTGGGATGGCTATACCAAATGCAAATCCAGGGTCTTCTCAGAAGGGGTTCTTTATTTTTGATCAGTCTGGGAATGAAACAAGGCTAATATACAATTCTGTTTTCCCTCCTAGCCCGTATCCACCAATGGCCAGCGTGAAGCTTGGGTGTGGTTATGATTCACATAAACTGGGACAAACAACCAGCATGGATCAAATTGGTCCAACCAAGTACTTCTTACGTGAAGAGACCGGTGAGAATCATATAATTGAAGAGAGTGAGATGCATGAAGACACAGAAGAAATCAATGCATTGCTTTACTCTGATGATGATGATGATGATGATGATGATGATTGCGGGGAGGATGATGAAGTAAAAAGCACGGGTCACTCTCCATTCTGCCGTCAAGAGAATTATGGGAAGAACGAAGATGTTGAGGAAGTAGCACAGAAGATGAATAGTTCTGAATCAGATCCTCCAAACAAAAGACACAAATTGCTTGACAGTGGCTACGTGCAATTATCACCAGTGAAGACTGTCATTAATTCGTTACAACTCGATAAGTCTCATGAGTACGGGAACAATACGGAGTCAAGCAACACTCTTGGCCAGAGCCAAGGAGAGGAAGGAAGTTGGAGTAAGGGTAAGATGAAGTCGAAAACAGACAAGATTTGTGAGACAGTTCGAGTTCTTGAGAGCTTAATTCCTGGTGCTAAGGGCAAGGACCCGGTGTTGATCATCGACGAAGCTATAGACTACTTGAAGTCTATGAAGCTTAAAGCCGAAACTCTGGGAGTAAGTTTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009653 GO:0009826 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0040007 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

37.88

Weight (kDa)

4.71

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	290 - 339	2.1e-14	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09460 AT5G64340
malus_domestica	MD04G1047600.v1.1
prunus_persica	Prupe.8G067600_v2.0.a1
pyrus_communis	pycom04g04160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	2 cut(s)	164, 579
AclWI	GGATC	2 cut(s)	441, 689
AcoI	YGGCCR	2 cut(s)	372, 829
AcsI	RAATTY	2 cut(s)	196, 236
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	2 cut(s)	455, 797
AfiI	CCNNNNNNNGG	3 cut(s)	51, 68, 844
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	4 cut(s)	155, 236, 494, 985
AjnI	CCWGG	2 cut(s)	271, 928
AluBI	AGCT	4 cut(s)	385, 921, 971, 997
AluI	AGCT	4 cut(s)	385, 921, 971, 997
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	3 cut(s)	464, 792, 893
AlwI	GGATC	2 cut(s)	441, 689
AlwNI	CAGNNNCTG	2 cut(s)	68, 101
AoxI	GGCC	2 cut(s)	372, 829
ApoI	RAATTY	2 cut(s)	196, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AseI	ATTAAT	1 cut(s)	765
AsiGI	ACCGGT	1 cut(s)	473
Asp700I	GAANNNNTTC	2 cut(s)	30, 290
AspS9I	GGNCC	2 cut(s)	443, 946
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	3 cut(s)	213, 488, 738
AvaII	GGWCC	2 cut(s)	443, 946
BalI	TGGCCA	2 cut(s)	374, 831
BbrPI	CACGTG	1 cut(s)	16
BbsI	GAAGAC	3 cut(s)	270, 519, 761
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	2 cut(s)	43, 244
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	2 cut(s)	273, 930
BciVI	GTATCC	1 cut(s)	372
BclI	TGATCA	2 cut(s)	304, 957
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	3 cut(s)	464, 792, 893
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	3 cut(s)	93, 173, 972
BfuI	GTATCC	1 cut(s)	372
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	273, 930, 950
Bme18I	GGWCC	2 cut(s)	443, 946
BmgT120I	GGNCC	2 cut(s)	443, 946
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	3 cut(s)	273, 930, 950
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	422
BpiI	GAAGAC	3 cut(s)	270, 519, 761
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	935
BpuMI	CCSGG	1 cut(s)	950
BsaAI	YACGTR	3 cut(s)	16, 464, 736
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	142, 272, 838
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	850, 880
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 68, 844
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	3 cut(s)	62, 417, 749
Bse3DI	GCAATG	2 cut(s)	80, 533
BseBI	CCWGG	2 cut(s)	273, 930
BseDI	CCNNGG	3 cut(s)	142, 272, 838
BseGI	GGATG	2 cut(s)	255, 592
BseLI	CCNNNNNNNGG	3 cut(s)	51, 68, 844
BseMI	GCAATG	2 cut(s)	80, 533
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	3 cut(s)	62, 417, 749
BseRI	GAGGAG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	374, 831
BshTI	ACCGGT	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	474, 950
BslFI	GGGAC	2 cut(s)	67, 429
BslI	CCNNNNNNNGG	3 cut(s)	51, 68, 844
BsmAI	GTCTC	3 cut(s)	464, 792, 893
BsmFI	GGGAC	2 cut(s)	67, 429
BsnI	GGCC	2 cut(s)	374, 831
Bso31I	GGTCTC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	304, 433, 694, 957
BspACI	CCGC	2 cut(s)	164, 579
BspANI	GGCC	2 cut(s)	374, 831
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	2 cut(s)	208, 790
BspLI	GGNNCC	1 cut(s)	948
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	2 cut(s)	441, 689
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	2 cut(s)	80, 533
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	62, 417, 749
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	3 cut(s)	142, 272, 838
BssMI	GATC	4 cut(s)	304, 433, 694, 957
BssT1I	CCWWGG	1 cut(s)	838
Bst2UI	CCWGG	2 cut(s)	273, 930
Bst4CI	ACNGT	5 cut(s)	97, 143, 728, 760, 904
Bst6I	CTCTTC	2 cut(s)	462, 489
BstBAI	YACGTR	3 cut(s)	16, 464, 736
BstC8I	GCNNGC	2 cut(s)	87, 376
BstDEI	CTNAG	2 cut(s)	282, 936
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	255, 592
BstKTI	GATC	4 cut(s)	307, 436, 697, 960
BstMAI	GTCTC	3 cut(s)	464, 792, 893
BstMBI	GATC	4 cut(s)	304, 433, 694, 957
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 172
BstNI	CCWGG	2 cut(s)	273, 930
BstSCI	CCNGG	3 cut(s)	271, 928, 948
BstSFI	CTRYAG	3 cut(s)	93, 173, 972
BstV2I	GAAGAC	3 cut(s)	270, 519, 761
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	374, 831
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	255, 592
BtsIMutI	CAGTG	2 cut(s)	733, 756
Cac8I	GCNNGC	2 cut(s)	87, 376
CaiI	CAGNNNCTG	2 cut(s)	68, 101
CciI	TCATGA	2 cut(s)	208, 790
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	443, 946
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	454, 796
CspAI	ACCGGT	1 cut(s)	473
CviAII	CATG	5 cut(s)	23, 209, 430, 509, 791
CviQI	GTAC	2 cut(s)	454, 796
DdeI	CTNAG	2 cut(s)	282, 936
DpnI	GATC	4 cut(s)	306, 435, 696, 959
DpnII	GATC	4 cut(s)	304, 433, 694, 957
EaeI	YGGCCR	2 cut(s)	372, 829
Eam1104I	CTCTTC	2 cut(s)	462, 489
EarI	CTCTTC	2 cut(s)	462, 489
Eco130I	CCWWGG	1 cut(s)	838
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	443, 946
Eco72I	CACGTG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	946
EcoRII	CCWGG	2 cut(s)	271, 928
EcoT14I	CCWWGG	1 cut(s)	838
EcoT22I	ATGCAT	2 cut(s)	510, 535
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	5 cut(s)	26, 212, 433, 512, 794
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 443, 475
FaqI	GGGAC	2 cut(s)	67, 429
FatI	CATG	5 cut(s)	22, 208, 429, 508, 790
FauI	CCCGC	1 cut(s)	572
FauNDI	CATATG	1 cut(s)	75
FbaI	TGATCA	2 cut(s)	304, 957
FblI	GTMKAC	1 cut(s)	92
FokI	GGATG	2 cut(s)	262, 599
FspBI	CTAG	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	374, 831
HapII	CCGG	2 cut(s)	474, 950
HgaI	GACGC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	26, 212, 433, 512, 794
HindIII	AAGCTT	2 cut(s)	383, 995
HinfI	GANTC	5 cut(s)	112, 401, 481, 689, 812
HpaII	CCGG	2 cut(s)	474, 950
HphI	GGTGA	3 cut(s)	213, 488, 738
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	6 cut(s)	111, 117, 285, 547, 688, 694
Hpy188III	TCNNGA	5 cut(s)	69, 209, 629, 791, 914
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	968
HpyAV	CCTTC	2 cut(s)	280, 842
HpyCH4III	ACNGT	5 cut(s)	97, 143, 728, 760, 904
HpyCH4IV	ACGT	3 cut(s)	15, 463, 735
HpyCH4V	TGCA	6 cut(s)	19, 175, 266, 508, 533, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 172
HpyF3I	CTNAG	2 cut(s)	282, 936
HpySE526I	ACGT	3 cut(s)	15, 463, 735
Hsp92II	CATG	5 cut(s)	26, 212, 433, 512, 794
Ksp22I	TGATCA	2 cut(s)	304, 957
Kzo9I	GATC	4 cut(s)	304, 433, 694, 957
LmnI	GCTCC	1 cut(s)	10
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	3 cut(s)	15, 463, 735
MaeIII	GTNAC	3 cut(s)	219, 608, 771
MalI	GATC	4 cut(s)	306, 435, 696, 959
MboI	GATC	4 cut(s)	304, 433, 694, 957
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	2 cut(s)	374, 831
MluNI	TGGCCA	2 cut(s)	374, 831
MlyI	GAGTC	2 cut(s)	121, 821
MmeI	TCCRAC	2 cut(s)	470, 836
MnlI	CCTC	8 cut(s)	43, 198, 201, 360, 577, 652, 708, 838
Mox20I	TGGCCA	2 cut(s)	374, 831
Mph1103I	ATGCAT	2 cut(s)	510, 535
MroXI	GAANNNNTTC	2 cut(s)	30, 290
MscI	TGGCCA	2 cut(s)	374, 831
MseI	TTAA	3 cut(s)	765, 923, 999
Msp20I	TGGCCA	2 cut(s)	374, 831
MspI	CCGG	2 cut(s)	474, 950
MspR9I	CCNGG	3 cut(s)	273, 930, 950
MvaI	CCWGG	2 cut(s)	273, 930
MwoI	GCNNNNNNNGC	2 cut(s)	86, 172
NciI	CCSGG	1 cut(s)	950
NdeI	CATATG	1 cut(s)	75
NdeII	GATC	4 cut(s)	304, 433, 694, 957
NlaIII	CATG	5 cut(s)	26, 212, 433, 512, 794
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	2 cut(s)	219, 608
NsiI	ATGCAT	2 cut(s)	510, 535
PagI	TCATGA	2 cut(s)	208, 790
PdmI	GAANNNNTTC	2 cut(s)	30, 290
PfeI	GAWTC	3 cut(s)	401, 481, 689
PflMI	CCANNNNNTGG	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	473
PleI	GAGTC	2 cut(s)	120, 820
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	2 cut(s)	120, 820
Ppu21I	YACGTR	3 cut(s)	16, 464, 736
PpuMI	RGGWCCY	1 cut(s)	946
PshBI	ATTAAT	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	271, 928
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	271, 928
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	443, 946
PspPPI	RGGWCCY	1 cut(s)	946
PstI	CTGCAG	1 cut(s)	177
PstNI	CAGNNNCTG	2 cut(s)	68, 101
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	2 cut(s)	455, 797
RsaNI	GTAC	2 cut(s)	454, 796
SaqAI	TTAA	3 cut(s)	765, 923, 999
Sau3AI	GATC	4 cut(s)	304, 433, 694, 957
Sau96I	GGNCC	2 cut(s)	443, 946
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	2 cut(s)	121, 821
ScrFI	CCNGG	3 cut(s)	273, 930, 950
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	8 cut(s)	18, 182, 387, 466, 738, 923, 973, 999
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	3 cut(s)	93, 173, 972
SinI	GGWCC	2 cut(s)	443, 946
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
SsiI	CCGC	2 cut(s)	164, 579
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	271, 928, 948
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	5 cut(s)	97, 143, 728, 760, 904
TaiI	ACGT	3 cut(s)	18, 466, 738
TaqI	TCGA	4 cut(s)	780, 878, 907, 963
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	3 cut(s)	401, 481, 689
Tru1I	TTAA	3 cut(s)	765, 923, 999
Tru9I	TTAA	3 cut(s)	765, 923, 999
TscAI	CASTG	2 cut(s)	733, 756
TseFI	GTSAC	2 cut(s)	219, 608
Tsp45I	GTSAC	2 cut(s)	219, 608
TspDTI	ATGAA	9 cut(s)	39, 197, 225, 333, 525, 606, 692, 887, 1007
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	2 cut(s)	733, 756
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	443, 946
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	2 cut(s)	196, 236
XmiI	GTMKAC	1 cut(s)	92
XmnI	GAANNNNTTC	2 cut(s)	30, 290
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	455
Zsp2I	ATGCAT	2 cut(s)	510, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.