Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019318

Physical Location & Seq

Genomic Coordinates Forward (+)

16923524 .. 16923835

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCTCCGGGGCAGTATCAGTACCCTCAGGAACCCTATTCCCAGGGTGGCTATCCCCAGTATTCGGGCGGCTATATGCCGTATCCTCCAGCCCCAGCGGGTGGTTCACAGTGGTATCAGGGAGGACAGTATCAGCAGGGAGAGATTGCCACTAGCAGTGCAGGATCTTCGAGACAGGCAGGCCAGCCCAGTCAGGGGCGTGGTGCTCAGGGACGCGGCGTTCAGGCGGGCAGAGGCCGCGGCGGGCGTCAGCAGGGACAGGGGCGTCTTCACAATATTTCTCTGCAGGACGCTCAGAGCAACCCAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR PPR_2 PPR_3

Protein Analysis

104

Amino Acids

11.47

Weight (kDa)

11.86

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019318)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g14000 pycom05g24530 pycom06g05660 pycom07g10490 pycom08g06210 pycom11g05160 pycom14g06850 pycom16g00090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccII	CGCG	2 cut(s)	215, 239
AciI	CCGC	7 cut(s)	68, 97, 215, 226, 237, 239, 242
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	246, 264
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	4 cut(s)	63, 100, 193, 194
AjnI	CCWGG	1 cut(s)	41
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	180, 234
AsuC2I	CCSGG	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	97, 130
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	69, 216, 237, 240
BlsI	GCNGC	4 cut(s)	70, 217, 238, 241
Bme1390I	CCNGG	2 cut(s)	8, 43
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	8, 43
BmrI	ACTGGG	2 cut(s)	51, 182
BmuI	ACTGGG	2 cut(s)	51, 182
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	246, 264
BsaJI	CCNNGG	4 cut(s)	7, 41, 42, 237
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 100, 193, 194
Bse1I	ACTGG	2 cut(s)	57, 188
Bse21I	CCTNAGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	4 cut(s)	7, 41, 42, 237
BseLI	CCNNNNNNNGG	4 cut(s)	63, 100, 193, 194
BseMII	CTCAG	3 cut(s)	40, 220, 307
BseNI	ACTGG	2 cut(s)	57, 188
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	215, 239
BshFI	GGCC	2 cut(s)	182, 236
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	2 cut(s)	224, 269
BslI	CCNNNNNNNGG	4 cut(s)	63, 100, 193, 194
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	224, 269
BsnI	GGCC	2 cut(s)	182, 236
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	7 cut(s)	68, 97, 215, 226, 237, 239, 242
BspANI	GGCC	2 cut(s)	182, 236
BspCNI	CTCAG	3 cut(s)	39, 219, 306
BspFNI	CGCG	2 cut(s)	215, 239
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	287
BspPI	GGATC	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	57, 188
BssECI	CCNNGG	4 cut(s)	7, 41, 42, 237
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	2 cut(s)	246, 264
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	110, 128
BstACI	GRCGYC	2 cut(s)	246, 264
BstC8I	GCNNGC	4 cut(s)	180, 184, 228, 244
BstDEI	CTNAG	3 cut(s)	26, 206, 293
BstDSI	CCRYGG	1 cut(s)	237
BstFNI	CGCG	2 cut(s)	215, 239
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	6, 41
BstSFI	CTRYAG	1 cut(s)	283
BstUI	CGCG	2 cut(s)	215, 239
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	182, 236
BtgI	CCRYGG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	115, 162
Cac8I	GCNNGC	4 cut(s)	180, 184, 228, 244
Cfr42I	CCGCGG	1 cut(s)	240
CseI	GACGC	4 cut(s)	221, 235, 253, 298
Csp6I	GTAC	1 cut(s)	21
CviJI	RGCY	6 cut(s)	50, 71, 91, 182, 186, 236
CviKI_1	RGCY	6 cut(s)	50, 71, 91, 182, 186, 236
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	3 cut(s)	26, 206, 293
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	41
FaiI	YATR	2 cut(s)	74, 76
FaqI	GGGAC	2 cut(s)	224, 269
FauI	CCCGC	3 cut(s)	90, 219, 235
Fnu4HI	GCNGC	4 cut(s)	69, 216, 237, 240
Fsp4HI	GCNGC	4 cut(s)	69, 216, 237, 240
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	4 cut(s)	69, 216, 237, 240
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	182, 236
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	4 cut(s)	221, 235, 253, 298
Hin1I	GRCGYC	2 cut(s)	246, 264
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	2 cut(s)	28, 170
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	110, 128
HpyCH4V	TGCA	2 cut(s)	160, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	26, 206, 293
Hsp92I	GRCGYC	2 cut(s)	246, 264
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	152
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	158, 259
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	35, 95, 115, 226
MspA1I	CMGCKG	2 cut(s)	97, 239
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	8, 43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	215, 239
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	32
PasI	CCCWGGG	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	70, 217, 238, 241
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SacII	CCGCGG	1 cut(s)	240
SatI	GCNGC	4 cut(s)	69, 216, 237, 240
Sau3AI	GATC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	8, 43
SduI	GDGCHC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
SsiI	CCGC	7 cut(s)	68, 97, 215, 226, 237, 239, 242
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	6, 41
TaaI	ACNGT	2 cut(s)	110, 128
TaqI	TCGA	1 cut(s)	169
TauI	GCSGC	4 cut(s)	71, 218, 239, 242
TscAI	CASTG	2 cut(s)	115, 162
TspRI	CASTG	2 cut(s)	115, 162
Van91I	CCANNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.