pycom11g05160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0019318
Physical Location & Seq
Reverse (-)
3991591 .. 3992118
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05160.1

Sequence Viewer

Length: 348 bp
ATGAAAAGAAAGATGACAAAGGGAAAAGTCAAGTGTCGCTTGGGCCTCGCCAAACTCAGAACTTCAAAAGGGGTGGTGCCAGTTCGAGTTCGTCTAGTGGTGGTTTCAGTGCCTCTGGACAAGGACGTGGAGGTAGGTTTTATGGAGGTGCTCGAGGCCAGAGACAAGGTGATGGTGGTCGAAACCGACCCCCATTTTGCCGTAGGTGTAGAGGTGGTGCTTACCACTATCAGGGTGATGTTGTTCCCTATGCTCCGGGACCGTATCAGTACCCCCAGGACCCGTATTCACAAGGTGGTTATCCCTCGTACCCCAGCAACTACATGCCGTATCCTCCAGCTCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

11.14

Isoelectric Point (pI)

24.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 2 cut(s) 271, 310
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 66
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 2 cut(s) 43, 156
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspS9I GGNCC 3 cut(s) 43, 259, 279
AsuC2I CCSGG 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 181, 247
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 2 cut(s) 259, 279
BanI GGYRCC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 1 cut(s) 166
BceAI ACGGC 2 cut(s) 185, 312
BciT130I CCWGG 1 cut(s) 277
BciVI GTATCC 1 cut(s) 341
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 95
BfuI GTATCC 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 257, 277
Bme18I GGWCC 2 cut(s) 259, 279
BmeT110I CYCGRG 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 43, 259, 279
BmiI GGNNCC 3 cut(s) 78, 260, 281
BmrFI CCNGG 2 cut(s) 257, 277
BpmI CTGGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 275
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 80
BseYI CCCAGC 1 cut(s) 313
BshFI GGCC 2 cut(s) 45, 158
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 2 cut(s) 45, 158
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 153
BspANI GGCC 2 cut(s) 45, 158
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 78, 260, 281
BspT107I GGYRCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 255, 275
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 2 cut(s) 45, 158
BtrI CACGTC 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 43, 259, 279
Csp6I GTAC 2 cut(s) 270, 309
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 1 cut(s) 324
CviJI RGCY 3 cut(s) 45, 158, 340
CviKI_1 RGCY 3 cut(s) 45, 158, 340
CviQI GTAC 2 cut(s) 270, 309
DdeI CTNAG 1 cut(s) 56
DraIII CACNNNGTG 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 259, 279
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 327
FaiI YATR 3 cut(s) 143, 251, 325
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 323
FspBI CTAG 1 cut(s) 95
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 2 cut(s) 45, 158
HapII CCGG 1 cut(s) 256
Hin1II CATG 1 cut(s) 327
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 181, 247
Hpy188I TCNGA 2 cut(s) 59, 344
Hpy188III TCNNGA 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 327
LmnI GCTCC 2 cut(s) 258, 345
LpnPI CCDG 8 cut(s) 93, 101, 172, 217, 262, 269, 289, 327
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 153
MnlI CCTC 8 cut(s) 56, 123, 124, 139, 148, 205, 315, 344
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 257, 277
MvaI CCWGG 1 cut(s) 277
NciI CCSGG 1 cut(s) 257
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 3 cut(s) 78, 260, 281
NspI RCATGY 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 255
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 78, 260, 281
PspPI GGNCC 3 cut(s) 43, 259, 279
PspPPI RGGWCCY 1 cut(s) 279
PspXI VCTCGAGB 1 cut(s) 152
RsaI GTAC 2 cut(s) 271, 310
RsaNI GTAC 2 cut(s) 270, 309
Sau96I GGNCC 3 cut(s) 43, 259, 279
ScrFI CCNGG 2 cut(s) 257, 277
SduI GDGCHC 1 cut(s) 153
SetI ASST 9 cut(s) 129, 135, 139, 150, 171, 208, 216, 297, 342
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 2 cut(s) 259, 279
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 255, 275
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 85, 153, 180
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 259, 279
XceI RCATGY 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.