Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0019318

Physical Location & Seq

Genomic Coordinates Forward (+)

8507042 .. 8507353

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g05660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCTCCGGGGCAGTATCAGTACCCTCAGGATCCCTATTCCCAGGGTGGCTATCCCCAGTATTCAGGCGGCTATATGCCGTATCCTCCAGCCCCAGCGGGTGGTTCACAGTGGTATCAGGGAGGACAGTATCAGCAGGGGGAGATTGCCACTAGCAGTGCAGGATCTTCGAGACAGTCAGGCCAGCCCAGTCAGGGGCGTGGTGCTCAGGGACGCGGTGTTCAGGCGAGCCGAGGCCGCGGTGGGCGTCAGCAGGGACAGGGGCGTCTTCACAATATTTCTCTGCAGGACGCTCAGAACAACCCATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR PPR_2 PPR_3

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

11.85

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019318)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g14000 pycom05g24530 pycom06g05660 pycom07g10490 pycom08g06210 pycom11g05160 pycom14g06850 pycom16g00090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccII	CGCG	2 cut(s)	215, 239
AciI	CCGC	5 cut(s)	68, 97, 215, 237, 239
AclWI	GGATC	3 cut(s)	25, 38, 171
AcyI	GRCGYC	2 cut(s)	246, 264
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	3 cut(s)	100, 193, 194
AjnI	CCWGG	1 cut(s)	41
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	3 cut(s)	25, 38, 171
AoxI	GGCC	2 cut(s)	180, 234
AsuC2I	CCSGG	1 cut(s)	8
AxyI	CCTNAGG	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	97, 130
BamHI	GGATCC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	2 cut(s)	69, 237
BlsI	GCNGC	2 cut(s)	70, 238
Bme1390I	CCNGG	2 cut(s)	8, 43
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	8, 43
BmrI	ACTGGG	2 cut(s)	51, 182
BmuI	ACTGGG	2 cut(s)	51, 182
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	246, 264
BsaJI	CCNNGG	5 cut(s)	7, 41, 42, 231, 237
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 193, 194
Bse1I	ACTGG	2 cut(s)	57, 188
Bse21I	CCTNAGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	5 cut(s)	7, 41, 42, 231, 237
BseLI	CCNNNNNNNGG	3 cut(s)	100, 193, 194
BseMII	CTCAG	3 cut(s)	40, 220, 307
BseNI	ACTGG	2 cut(s)	57, 188
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	2 cut(s)	215, 239
BshFI	GGCC	2 cut(s)	182, 236
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	2 cut(s)	224, 269
BslI	CCNNNNNNNGG	3 cut(s)	100, 193, 194
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	224, 269
BsnI	GGCC	2 cut(s)	182, 236
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	30, 163
BspACI	CCGC	5 cut(s)	68, 97, 215, 237, 239
BspANI	GGCC	2 cut(s)	182, 236
BspCNI	CTCAG	3 cut(s)	39, 219, 306
BspFNI	CGCG	2 cut(s)	215, 239
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	287
BspPI	GGATC	3 cut(s)	25, 38, 171
BsrI	ACTGG	2 cut(s)	57, 188
BssECI	CCNNGG	5 cut(s)	7, 41, 42, 231, 237
BssMI	GATC	2 cut(s)	30, 163
BssNI	GRCGYC	2 cut(s)	246, 264
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	3 cut(s)	110, 128, 176
BstACI	GRCGYC	2 cut(s)	246, 264
BstC8I	GCNNGC	2 cut(s)	184, 228
BstDEI	CTNAG	3 cut(s)	26, 206, 293
BstDSI	CCRYGG	1 cut(s)	237
BstFNI	CGCG	2 cut(s)	215, 239
BstKTI	GATC	2 cut(s)	33, 166
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	30, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	6, 41
BstSFI	CTRYAG	1 cut(s)	283
BstUI	CGCG	2 cut(s)	215, 239
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	30, 163
BstYI	RGATCY	2 cut(s)	30, 163
Bsu36I	CCTNAGG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	182, 236
BtgI	CCRYGG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	115, 162
Cac8I	GCNNGC	2 cut(s)	184, 228
Cfr42I	CCGCGG	1 cut(s)	240
CseI	GACGC	4 cut(s)	221, 235, 253, 298
Csp6I	GTAC	1 cut(s)	21
CviJI	RGCY	7 cut(s)	50, 71, 91, 182, 186, 230, 236
CviKI_1	RGCY	7 cut(s)	50, 71, 91, 182, 186, 230, 236
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	3 cut(s)	26, 206, 293
DpnI	GATC	2 cut(s)	32, 165
DpnII	GATC	2 cut(s)	30, 163
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	41
FaiI	YATR	3 cut(s)	74, 76, 306
FaqI	GGGAC	2 cut(s)	224, 269
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	69, 237
Fsp4HI	GCNGC	2 cut(s)	69, 237
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	2 cut(s)	69, 237
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	182, 236
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	4 cut(s)	221, 235, 253, 298
Hin1I	GRCGYC	2 cut(s)	246, 264
HpaII	CCGG	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	296
Hpy188III	TCNNGA	2 cut(s)	28, 170
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	3 cut(s)	110, 128, 176
HpyCH4V	TGCA	2 cut(s)	160, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	26, 206, 293
Hsp92I	GRCGYC	2 cut(s)	246, 264
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	30, 163
LmnI	GCTCC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	152
MalI	GATC	2 cut(s)	32, 165
MboI	GATC	2 cut(s)	30, 163
MboII	GAAGA	2 cut(s)	158, 259
MflI	RGATCY	2 cut(s)	30, 163
MhlI	GDGCHC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	35, 95, 115, 226
MspA1I	CMGCKG	2 cut(s)	97, 239
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	8, 43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	215, 239
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	2 cut(s)	30, 163
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	1 cut(s)	256
PasI	CCCWGGG	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	70, 238
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	32
PsrI	GAACNNNNNNTAC	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	30, 163
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SacII	CCGCGG	1 cut(s)	240
SatI	GCNGC	2 cut(s)	69, 237
Sau3AI	GATC	2 cut(s)	30, 163
ScrFI	CCNGG	2 cut(s)	8, 43
SduI	GDGCHC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
SsiI	CCGC	5 cut(s)	68, 97, 215, 237, 239
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	6, 41
TaaI	ACNGT	3 cut(s)	110, 128, 176
TaqI	TCGA	1 cut(s)	169
TauI	GCSGC	2 cut(s)	71, 239
TscAI	CASTG	2 cut(s)	115, 162
TspRI	CASTG	2 cut(s)	115, 162
Van91I	CCANNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.